Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Reverse (-)

6999796 .. 7005537

Gene Structure 5742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCAGTCTCGGAGAAATCTCGGCCGAGCTCGTCTGCTTCTTCTTCATCTTCAGTTTCAGTCAATGAATTTGATCCATTGCTGAAAGATTTGAATGAGAAGAAGCAGAGCTTTCGCCGGAACGTGGTGTCGTTGGCGTCGGAGCTGAAGCAGGTTCGGAGCCGCTTAGCTTCTCAAGAGCAATCATATGTTAGAGAAACTCTCACAAGACAGGAAGTAGAGACAAAAGCTAAAAACATGGAAGAGGAGATTGGTAGATTGCAGAAGAGATTGGAACAAAGAAATGTGCAGCTTGAGGCTTCCACATCTAAAACTGAAAAGTGCCTTACAGAGTTGGATGGTCTGAGATCACAACTTGCAGCCACCCAAGCAACTGCAGATACTAGTGCTGCATCAGCTCAATCGGCACAGCTCCAATGTCTAGCACTTGTAAAGGAAATAGATCAAAAGAATTGTTCCTTGAAGGAGCAAGATGAACGTATAATTAGGCTAGGAGAGCAATTAGACAAACTACAGAAGGATCTTCAGGCAAGAGAGTCTTCACAAAAGCAACTGAAAGATGATGTTCTGAGAATTGAGCAGGACATTATGCAAGCTGTTGCACAAGCAGGGGTGAACAAGGATTGTGAGCTGAGGAAAATATTAGATGAAGTTTCTCCAAAGAATATTGAGAGGCTTAATAATCTTTTAGTTATAAAGGATGAAGAAATAGGAAAACTGAAAGATGAAATCAGGATAATGTCCGCTCACTGGACGCTGAAAACTAAGGAGTTAGAATCACAGTTGGAGAGACAACGGCGAGCTGATCAGGAACTGAAAAAGAGGGTATTGAAATTGGAGTTCTGCCTTCAGGAAGCTCGAGCTCAAACAAGAAAGCTTCAAAGGGTAACCATTAGTTTCTTTATTGAGTTCTTTGTTCTTTTCAACTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

35.77

Weight (kDa)

8.82

Isoelectric Point (pI)

66.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	746
AciI	CCGC	2 cut(s)	163, 744
AclWI	GGATC	2 cut(s)	68, 528
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	4 cut(s)	36, 167, 509, 833
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	124, 750
AgsI	TTSAA	5 cut(s)	94, 463, 832, 881, 925
AhlI	ACTAGT	1 cut(s)	383
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
Alw21I	GWGCWC	2 cut(s)	32, 865
Alw26I	GTCTC	3 cut(s)	13, 215, 784
AlwI	GGATC	2 cut(s)	68, 528
AlwNI	CAGNNNCTG	1 cut(s)	814
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	289, 359, 389
ApoI	RAATTY	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	858
BanII	GRGCYC	2 cut(s)	32, 865
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	32, 865
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	301, 371, 376
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	812
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	3 cut(s)	13, 215, 784
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	3 cut(s)	384, 422, 491
BfmI	CTRYAG	2 cut(s)	375, 512
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	4 cut(s)	163, 290, 360, 390
BlpI	GCTNAGC	1 cut(s)	166
BlsI	GCNGC	4 cut(s)	164, 291, 361, 391
BmeT110I	CYCGRG	1 cut(s)	858
BmiI	GGNNCC	1 cut(s)	161
BmsI	GCATC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	531
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	166
BpuEI	CTTGAG	2 cut(s)	159, 314
BsaHI	GRCGYC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 750
Bse1I	ACTGG	1 cut(s)	755
Bse3DI	GCAATG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	343, 706
BseLI	CCNNNNNNNGG	2 cut(s)	124, 750
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	335, 560, 623
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	301, 371, 376
BsgI	GTGCAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	32, 865
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	124, 750
BsmAI	GTCTC	3 cut(s)	13, 215, 784
BsnI	GGCC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	858
Bsp1286I	GDGCHC	2 cut(s)	32, 865
Bsp143I	GATC	5 cut(s)	73, 347, 442, 520, 805
Bsp1720I	GCTNAGC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	163, 744
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	3 cut(s)	336, 561, 624
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	68, 528
BsrBI	CCGCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	755
BssMI	GATC	5 cut(s)	73, 347, 442, 520, 805
BssNI	GRCGYC	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	783
Bst6I	CTCTTC	2 cut(s)	237, 260
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	594, 801
BstDEI	CTNAG	5 cut(s)	166, 344, 569, 632, 765
BstEII	GGTNACC	1 cut(s)	886
BstF5I	GGATG	2 cut(s)	343, 706
BstKTI	GATC	5 cut(s)	76, 350, 445, 523, 808
BstMAI	GTCTC	3 cut(s)	13, 215, 784
BstMBI	GATC	5 cut(s)	73, 347, 442, 520, 805
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 395, 404, 496
BstPI	GGTNACC	1 cut(s)	886
BstSFI	CTRYAG	2 cut(s)	375, 512
BstV1I	GCAGC	3 cut(s)	301, 371, 376
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BstZI	CGGCCG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	343, 706
BtsIMutI	CAGTG	1 cut(s)	748
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	594, 801
CaiI	CAGNNNCTG	1 cut(s)	814
CseI	GACGC	2 cut(s)	126, 763
CviAII	CATG	1 cut(s)	238
DdeI	CTNAG	5 cut(s)	166, 344, 569, 632, 765
DpnI	GATC	5 cut(s)	75, 349, 444, 522, 807
DpnII	GATC	5 cut(s)	73, 347, 442, 520, 805
EaeI	YGGCCR	1 cut(s)	23
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	237, 260
EarI	CTCTTC	2 cut(s)	237, 260
Ecl136II	GAGCTC	2 cut(s)	30, 863
EclXI	CGGCCG	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	32, 865
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	2 cut(s)	30, 863
Eco57I	CTGAAG	4 cut(s)	36, 167, 509, 833
Eco88I	CYCGRG	1 cut(s)	858
Eco91I	GGTNACC	1 cut(s)	886
EcoICRI	GAGCTC	2 cut(s)	30, 863
EcoO65I	GGTNACC	1 cut(s)	886
EcoT38I	GRGCYC	2 cut(s)	32, 865
FaeI	CATG	1 cut(s)	241
FaiI	YATR	6 cut(s)	187, 189, 239, 482, 590, 695
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 523, 555
FatI	CATG	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	4 cut(s)	163, 290, 360, 390
FokI	GGATG	2 cut(s)	350, 713
FriOI	GRGCYC	2 cut(s)	32, 865
Fsp4HI	GCNGC	4 cut(s)	163, 290, 360, 390
FspBI	CTAG	3 cut(s)	384, 422, 491
GluI	GCNGC	4 cut(s)	163, 290, 360, 390
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	2 cut(s)	126, 763
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	2 cut(s)	536, 776
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	5 cut(s)	13, 142, 159, 345, 570
Hpy188III	TCNNGA	4 cut(s)	176, 733, 809, 851
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	3 cut(s)	457, 511, 857
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4IV	ACGT	2 cut(s)	123, 478
HpyCH4V	TGCA	7 cut(s)	262, 289, 359, 377, 392, 592, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 395, 404, 496
HpyF3I	CTNAG	5 cut(s)	166, 344, 569, 632, 765
HpySE526I	ACGT	2 cut(s)	123, 478
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	73, 347, 442, 520, 805
LmnI	GCTCC	4 cut(s)	142, 159, 417, 466
Lsp1109I	GCAGC	3 cut(s)	301, 371, 376
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	3 cut(s)	384, 422, 491
MaeII	ACGT	2 cut(s)	123, 478
MaeIII	GTNAC	1 cut(s)	886
MalI	GATC	5 cut(s)	75, 349, 444, 522, 807
MbiI	CCGCTC	1 cut(s)	746
MboI	GATC	5 cut(s)	73, 347, 442, 520, 805
MboII	GAAGA	9 cut(s)	33, 36, 42, 112, 254, 277, 515, 531, 716
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	32, 865
MluCI	AATT	6 cut(s)	68, 451, 483, 500, 573, 833
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	3 cut(s)	120, 315, 765
MnlI	CCTC	5 cut(s)	238, 289, 627, 666, 816
MseI	TTAA	1 cut(s)	678
MspI	CCGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	368, 395, 404, 496
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	5 cut(s)	73, 347, 442, 520, 805
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	161
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	858
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	164, 291, 361, 391
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PsiI	TTATAA	1 cut(s)	695
Psp124BI	GAGCTC	2 cut(s)	32, 865
PspEI	GGTNACC	1 cut(s)	886
PspN4I	GGNNCC	1 cut(s)	161
PspXI	VCTCGAGB	1 cut(s)	858
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	520
SacI	GAGCTC	2 cut(s)	32, 865
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	4 cut(s)	163, 290, 360, 390
Sau3AI	GATC	5 cut(s)	73, 347, 442, 520, 805
SchI	GAGTC	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	32, 865
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	2 cut(s)	375, 512
Sfr274I	CTCGAG	1 cut(s)	858
SlaI	CTCGAG	1 cut(s)	858
SmlI	CTYRAG	3 cut(s)	174, 293, 858
SmoI	CTYRAG	3 cut(s)	174, 293, 858
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	6 cut(s)	68, 451, 483, 500, 573, 833
SsiI	CCGC	2 cut(s)	163, 744
SspI	AATATT	2 cut(s)	642, 667
SspMI	CTAG	3 cut(s)	384, 422, 491
SstI	GAGCTC	2 cut(s)	32, 865
TaaI	ACNGT	1 cut(s)	783
TaiI	ACGT	2 cut(s)	126, 481
TaqI	TCGA	1 cut(s)	859
TasI	AATT	6 cut(s)	68, 451, 483, 500, 573, 833
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	1 cut(s)	755
TseI	GCWGC	3 cut(s)	289, 359, 389
TspDTI	ATGAA	6 cut(s)	36, 81, 489, 663, 717, 741
TspRI	CASTG	1 cut(s)	755
XapI	RAATTY	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	858
XspI	CTAG	3 cut(s)	384, 422, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.