Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Forward (+)

28122851 .. 28126601

Gene Structure 3751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1200500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCGTCGATTTCGGAGAAATCACTGCCTTTGTCACCTTCCTCATCACTGTCATCGATGTCGGTCCACGAATTTGATCCGTTGCTAAAAGATTTGGATGAGAGGAAGCAGAGTTTTCGCCGGAATGTGGTGTCGTTGGCATCGGAGTTAAAGGATGTCCGGAGCCGGTTAGCTTCTCAGGAGCGATCATTTGTTAAAGAAACCCTCACAAGACAGGAAGCAGAGACAAGGGCTAAAATCTTGGAAGAGGAGATTAGCGTAATGCAGAAGAGATTGCATCAGCAGCTTGAGGCCTCATCATCTATGGCCGAGAAGTACCTTACGGAAGTGGATGGTCCGAGATCGCAGCTTTCGGCCACTCAAGCAACTGCCGATATTAGTGCTGCATCAGCTCAATTGGCACAGCTTCAGTGTTTAGCGCTTTTGAAGGAAATAGATGAAAAGAACTGCTCGTTAAAAGAGCAAGATGATCGTGTAATTAAACTAGGAGAGCAATTAGATAATCTGCAGAAGGATATTAAGGCAAGAGAGTTTTCCCAGAAGCAACTGAAAGATGAAGTTTTGAGAGTTGAGAATGACATTATGCAAGCTGTTGCGAAAGCAGGGGTGAACAGGGATTGCGAGCTGAGGAAAATATTAGATGAGGTTTCTCCGAAGAATATTGAGAAGATTAATAAGCTTTTAGTTGTTAAGGATGAAGAAATAGCAAAACTGAAAGATGAAATCAGGGTAATGTTAGCTCATTGGAAGCTCAAAACTAAGGAGTTTGAATCACAGTTGGAGAAACAACGGCGAGTTGATCAGGAACTGAAAAAGAGGGTATTGAAATTAGAGTTTTGTCTCCAGGAAGCTCGTGCTCAAACACGAAAGCTTCAAAGGATGGGTGAACGAAGAGACAAGGCTCTGAAAGAGCTCAGAGATCAGTTACAACGGGGTGGCGGTGGAGCTGCAGCTGCTGAAAGACAAAATTTTTGGGAAACCTCCGGTTTCAAAATCATGATGTCTATGTCCATGTTAGTCTTGGTGGCATTCGCGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

39.74

Weight (kDa)

9.06

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1034
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	1 cut(s)	939
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	2 cut(s)	306, 354
AcsI	RAATTY	2 cut(s)	71, 967
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	317
AfeI	AGCGCT	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	5 cut(s)	427, 770, 826, 875, 991
AjnI	CCWGG	1 cut(s)	843
Alw21I	GWGCWC	2 cut(s)	859, 915
Alw26I	GTCTC	3 cut(s)	218, 845, 888
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	2 cut(s)	808, 956
Aor13HI	TCCGGA	1 cut(s)	159
Aor51HI	AGCGCT	1 cut(s)	420
AoxI	GGCC	3 cut(s)	291, 306, 354
ApeKI	GCWGC	6 cut(s)	283, 346, 383, 947, 950, 953
ApoI	RAATTY	2 cut(s)	71, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	954, 986
AseI	ATTAAT	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	64, 335
AsuHPI	GGTGA	3 cut(s)	27, 619, 896
AvaII	GGWCC	2 cut(s)	64, 335
BanII	GRGCYC	1 cut(s)	915
BauI	CACGAG	1 cut(s)	852
Bbv12I	GWGCWC	2 cut(s)	859, 915
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	6 cut(s)	295, 358, 370, 934, 940, 962
BccI	CCATC	2 cut(s)	326, 874
BceAI	ACGGC	1 cut(s)	806
BcgI	CGANNNNNNTGC	6 cut(s)	98, 132, 362, 396, 452, 486
BciT130I	CCWGG	1 cut(s)	845
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	218, 845, 888
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	2 cut(s)	506, 948
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	6 cut(s)	284, 347, 384, 948, 951, 954
BlsI	GCNGC	6 cut(s)	285, 348, 385, 949, 952, 955
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	2 cut(s)	64, 335
BmgT120I	GGNCC	2 cut(s)	64, 335
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	3 cut(s)	149, 286, 395
BpmI	CTGGAG	1 cut(s)	827
Bpu10I	CCTNAGC	1 cut(s)	626
BpuEI	CTTGAG	2 cut(s)	308, 345
Bsa29I	ATCGAT	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	159, 983
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	845
BseCI	ATCGAT	1 cut(s)	56
BseGI	GGATG	5 cut(s)	103, 160, 337, 700, 885
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	3 cut(s)	191, 617, 928
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	6 cut(s)	295, 358, 370, 934, 940, 962
Bsh1236I	CGCG	1 cut(s)	1034
BshFI	GGCC	3 cut(s)	293, 308, 356
BshVI	ATCGAT	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	859, 915
BsiSI	CCGG	4 cut(s)	121, 160, 166, 984
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	3 cut(s)	218, 845, 888
BsmI	GAATGC	1 cut(s)	1028
BsnI	GGCC	3 cut(s)	293, 308, 356
Bsp1286I	GDGCHC	2 cut(s)	859, 915
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
Bsp68I	TCGCGA	1 cut(s)	1034
BspACI	CCGC	1 cut(s)	939
BspANI	GGCC	3 cut(s)	293, 308, 356
BspCNI	CTCAG	3 cut(s)	190, 618, 927
BspDI	ATCGAT	1 cut(s)	56
BspEI	TCCGGA	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	1034
BspHI	TCATGA	1 cut(s)	996
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	2 cut(s)	510, 952
BspPI	GGATC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	852
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	2 cut(s)	51, 777
Bst6I	CTCTTC	4 cut(s)	240, 263, 886, 1031
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	588, 623
BstDEI	CTNAG	4 cut(s)	177, 626, 759, 914
BstF5I	GGATG	5 cut(s)	103, 160, 337, 700, 885
BstFNI	CGCG	1 cut(s)	1034
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	6 cut(s)	79, 188, 344, 472, 802, 922
BstMAI	GTCTC	3 cut(s)	218, 845, 888
BstMBI	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 362, 389, 398, 953
BstNI	CCWGG	1 cut(s)	845
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	2 cut(s)	506, 948
BstUI	CGCG	1 cut(s)	1034
BstV1I	GCAGC	6 cut(s)	295, 358, 370, 934, 940, 962
Bsu15I	ATCGAT	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	293, 308, 356
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	5 cut(s)	103, 160, 337, 700, 885
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	3 cut(s)	23, 47, 416
BtuMI	TCGCGA	1 cut(s)	1034
Cac8I	GCNNGC	2 cut(s)	588, 623
CaiI	CAGNNNCTG	2 cut(s)	808, 956
CciI	TCATGA	1 cut(s)	996
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	64, 335
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	997, 1012
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	177, 626, 759, 914
DpnI	GATC	6 cut(s)	78, 187, 343, 471, 801, 921
DpnII	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
EaeI	YGGCCR	2 cut(s)	306, 354
Eam1104I	CTCTTC	4 cut(s)	240, 263, 886, 1031
EarI	CTCTTC	4 cut(s)	240, 263, 886, 1031
Ecl136II	GAGCTC	1 cut(s)	913
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	915
Eco47I	GGWCC	2 cut(s)	64, 335
Eco47III	AGCGCT	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	843
EcoT38I	GRGCYC	1 cut(s)	915
FaeI	CATG	2 cut(s)	1000, 1015
FaiI	YATR	5 cut(s)	305, 584, 998, 1007, 1013
FatI	CATG	2 cut(s)	996, 1011
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	6 cut(s)	284, 347, 384, 948, 951, 954
FokI	GGATG	5 cut(s)	110, 167, 344, 707, 892
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	6 cut(s)	284, 347, 384, 948, 951, 954
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	6 cut(s)	284, 347, 384, 948, 951, 954
GsuI	CTGGAG	1 cut(s)	827
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	293, 308, 356
HapII	CCGG	4 cut(s)	121, 160, 166, 984
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	1000, 1015
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	677, 869
HinfI	GANTC	1 cut(s)	770
HpaII	CCGG	4 cut(s)	121, 160, 166, 984
HphI	GGTGA	3 cut(s)	27, 619, 896
Hpy166II	GTNNAC	3 cut(s)	67, 610, 887
Hpy188I	TCNGA	6 cut(s)	16, 145, 339, 654, 906, 917
Hpy188III	TCNNGA	5 cut(s)	160, 179, 803, 997, 1033
Hpy8I	GTNNAC	3 cut(s)	67, 610, 887
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	48, 421, 505
HpyCH4III	ACNGT	2 cut(s)	51, 777
HpyCH4V	TGCA	6 cut(s)	265, 277, 386, 508, 586, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 362, 389, 398, 953
HpyF3I	CTNAG	4 cut(s)	177, 626, 759, 914
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	1000, 1015
HspAI	GCGC	1 cut(s)	419
Kpn2I	TCCGGA	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
LmnI	GCTCC	3 cut(s)	162, 181, 944
Lsp1109I	GCAGC	6 cut(s)	295, 358, 370, 934, 940, 962
LweI	GCATC	3 cut(s)	149, 286, 395
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	33, 924
MalI	GATC	6 cut(s)	78, 187, 343, 471, 801, 921
MboI	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
MboII	GAAGA	6 cut(s)	257, 280, 667, 679, 710, 903
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	859, 915
MluCI	AATT	6 cut(s)	71, 395, 477, 494, 827, 967
MmeI	TCCRAC	1 cut(s)	759
MroI	TCCGGA	1 cut(s)	159
MseI	TTAA	7 cut(s)	149, 195, 455, 480, 519, 672, 690
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	4 cut(s)	121, 160, 166, 984
MspR9I	CCNGG	1 cut(s)	845
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	1028
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	5 cut(s)	283, 362, 389, 398, 953
NdeII	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
NlaIII	CATG	2 cut(s)	1000, 1015
NlaIV	GGNNCC	1 cut(s)	164
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	33
NruI	TCGCGA	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	996
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	1028
PfeI	GAWTC	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	843
PkrI	GCNGC	6 cut(s)	285, 348, 385, 949, 952, 955
PshBI	ATTAAT	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	64, 335
PstI	CTGCAG	2 cut(s)	510, 952
PstNI	CAGNNNCTG	2 cut(s)	808, 956
PvuII	CAGCTG	1 cut(s)	953
RruI	TCGCGA	1 cut(s)	1034
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	7 cut(s)	149, 195, 455, 480, 519, 672, 690
SatI	GCNGC	6 cut(s)	284, 347, 384, 948, 951, 954
Sau3AI	GATC	6 cut(s)	76, 185, 341, 469, 799, 919
Sau96I	GGNCC	2 cut(s)	64, 335
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	2 cut(s)	859, 915
SfaNI	GCATC	3 cut(s)	149, 286, 395
SfcI	CTRYAG	2 cut(s)	506, 948
SinI	GGWCC	2 cut(s)	64, 335
SmlI	CTYRAG	2 cut(s)	287, 360
SmoI	CTYRAG	2 cut(s)	287, 360
Sse9I	AATT	6 cut(s)	71, 395, 477, 494, 827, 967
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	939
SspI	AATATT	2 cut(s)	636, 661
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	915
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	2 cut(s)	51, 777
TaqI	TCGA	2 cut(s)	8, 56
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	6 cut(s)	71, 395, 477, 494, 827, 967
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	7 cut(s)	149, 195, 455, 480, 519, 672, 690
Tru9I	TTAA	7 cut(s)	149, 195, 455, 480, 519, 672, 690
TscAI	CASTG	3 cut(s)	30, 54, 416
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	6 cut(s)	283, 346, 383, 947, 950, 953
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	4 cut(s)	453, 570, 711, 735
TspGWI	ACGGA	2 cut(s)	69, 338
TspRI	CASTG	3 cut(s)	30, 54, 416
VpaK11BI	GGWCC	2 cut(s)	64, 335
VspI	ATTAAT	1 cut(s)	672
XapI	RAATTY	2 cut(s)	71, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.