Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Forward (+)

27586726 .. 27591194

Gene Structure 4469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G305600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGATGTCAATTTCGGAGAAATCACTGCCCTGCTCGCCTTCTTCTTCCTCCTCGTCATTGTCATCGATGTCGGTCCAAGAGTTTGATCCATTGTTAAAAGATTTGAACGAGAAAAAGCAGAGCTTTCGGCGGAACGTGGTGTCATTAGCATCGGAGTTGAAGGAGGCTCGGAACCGCTTAGCTTCTCAAGAGCAATCATTTGTAAAAGAAACACTTACAAGACAGGAAGCACAGATGAAGGCTAAAAACTTGGAAGAAGAGATTGGTAGATTACAGAAGAGATTGGAACATAGAAATGAGAAGCTTGAGGCTTCAGCATCTACTGCTGAAAAGTACCTCATGGAATTGGATGGTCTGAGATCACAGCTTGCAACCACTCGGGCAACTGCAGATGCTAGTGCTGCATCAGCTCAGTCGGCACACCTTCAGTGTTCAGCACTTTTGAAGGAATTAGATGAAAAGAATTGCTCATTAAAAGAGCAAGATGATCGTGTAATTAGGCTAGGAGAGCAATTAGATAATCTGCAGAAGGACCTTCAGGCACGAGAGTTTTCCCAGAAGCAACTGAAAGATGAAGTTTTGAGAATTGAGCATGACATTATGCAAGCTGTTGCAAAAGCAGGGGTGAACAAGGACTGTGAGCTGAGGAAAATATTAGATGAGGTTTCGCCAAAGAATATTGAGAAGATTAATAAGCTTTTAGTTGCAAAGGATGAAGAAATAGCAAAATTGAGAGATGAAATCAGGGTAATGTCTGCTCATTGGAAGCTCAAAACTAAGGAGTTTGAATCACAGTTGGAGAAACAACGGCGAGCAGATCAGGAACTGAAAAAGAGGGTATTGAAATTAGAGTTTTGTCTCCAGGAAGCCCGTTCTCAAACACGAAAGCTTCAAAGGATGGGTGAGCGAAGAGACAAGGCTTTGAAAGAGCTCAGGGATCAGTTACAGCGGGGTGGCAGTGGAGCTTCAGCTGCTGAAAACCAAAATTTCTGGGAAAGCTCTGGTTTCAAAATCGTGGTGTCCATGTCCATGTTGATCTTGGTGGTGTTCTCAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.37

Weight (kDa)

9.09

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	130, 175, 949
AclWI	GGATC	2 cut(s)	80, 945
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	4 cut(s)	297, 410, 521, 951
AfaI	GTAC	1 cut(s)	335
AgsI	TTSAA	8 cut(s)	106, 160, 445, 788, 844, 893, 925, 1009
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	2 cut(s)	863, 906
AlwI	GGATC	2 cut(s)	80, 945
AlwNI	CAGNNNCTG	2 cut(s)	826, 974
Ama87I	CYCGRG	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	401, 971
ApoI	RAATTY	1 cut(s)	985
AseI	ATTAAT	1 cut(s)	690
AspS9I	GGNCC	2 cut(s)	73, 532
AsuHPI	GGTGA	2 cut(s)	637, 914
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	73, 532
BanII	GRGCYC	1 cut(s)	933
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	933
BbvCI	CCTCAGC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	388, 958
BccI	CCATC	2 cut(s)	344, 892
BceAI	ACGGC	1 cut(s)	824
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 470, 504
BciT130I	CCWGG	1 cut(s)	863
BcoDI	GTCTC	2 cut(s)	863, 906
BfaI	CTAG	2 cut(s)	396, 503
BfmI	CTRYAG	2 cut(s)	387, 524
BisI	GCNGC	2 cut(s)	402, 972
BlpI	GCTNAGC	1 cut(s)	178
BlsI	GCNGC	2 cut(s)	403, 973
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	2 cut(s)	73, 532
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	2 cut(s)	73, 532
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	4 cut(s)	158, 326, 382, 413
BpmI	CTGGAG	1 cut(s)	845
Bpu10I	CCTNAGC	2 cut(s)	644, 932
Bpu1102I	GCTNAGC	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	171, 326
Bsa29I	ATCGAT	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	863
BseCI	ATCGAT	1 cut(s)	65
BseGI	GGATG	3 cut(s)	355, 718, 903
BseMII	CTCAG	4 cut(s)	347, 425, 635, 946
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	388, 958
BshVI	ATCGAT	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	933
BsiHKCI	CYCGRG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	863, 906
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
Bsp1720I	GCTNAGC	1 cut(s)	178
BspACI	CCGC	3 cut(s)	130, 175, 949
BspCNI	CTCAG	4 cut(s)	348, 424, 636, 945
BspDI	ATCGAT	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	2 cut(s)	391, 528
BspPI	GGATC	2 cut(s)	80, 945
BssMI	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	2 cut(s)	638, 795
Bst6I	CTCTTC	3 cut(s)	252, 272, 904
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	35, 369, 606, 813
BstDEI	CTNAG	6 cut(s)	178, 356, 411, 644, 777, 932
BstF5I	GGATG	3 cut(s)	355, 718, 903
BstKTI	GATC	6 cut(s)	88, 362, 490, 820, 940, 1038
BstMAI	GTCTC	2 cut(s)	863, 906
BstMBI	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 323, 401, 407, 416, 508, 971
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	2 cut(s)	387, 524
BstV1I	GCAGC	2 cut(s)	388, 958
Bsu15I	ATCGAT	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	355, 718, 903
BtsI	GCAGTG	2 cut(s)	23, 964
BtsIMutI	CAGTG	3 cut(s)	23, 434, 964
Cac8I	GCNNGC	4 cut(s)	35, 369, 606, 813
CaiI	CAGNNNCTG	2 cut(s)	826, 974
Cfr13I	GGNCC	2 cut(s)	73, 532
ClaI	ATCGAT	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	4 cut(s)	340, 593, 1024, 1030
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	6 cut(s)	178, 356, 411, 644, 777, 932
DpnI	GATC	6 cut(s)	87, 361, 489, 819, 939, 1037
DpnII	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
Eam1104I	CTCTTC	3 cut(s)	252, 272, 904
EarI	CTCTTC	3 cut(s)	252, 272, 904
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	933
Eco47I	GGWCC	2 cut(s)	73, 532
Eco53kI	GAGCTC	1 cut(s)	931
Eco57I	CTGAAG	4 cut(s)	297, 410, 521, 951
Eco88I	CYCGRG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	931
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	933
FaeI	CATG	4 cut(s)	343, 596, 1027, 1033
FaiI	YATR	6 cut(s)	291, 341, 594, 602, 1025, 1031
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 198, 230
FatI	CATG	4 cut(s)	339, 592, 1023, 1029
FauI	CCCGC	1 cut(s)	942
Fnu4HI	GCNGC	2 cut(s)	402, 972
FokI	GGATG	3 cut(s)	362, 725, 910
FriOI	GRGCYC	1 cut(s)	933
Fsp4HI	GCNGC	2 cut(s)	402, 972
FspBI	CTAG	2 cut(s)	396, 503
GluI	GCNGC	2 cut(s)	402, 972
GsuI	CTGGAG	1 cut(s)	845
Hin1II	CATG	4 cut(s)	343, 596, 1027, 1033
HindIII	AAGCTT	3 cut(s)	302, 695, 887
HinfI	GANTC	1 cut(s)	788
HphI	GGTGA	2 cut(s)	637, 914
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	16, 154, 171, 357
Hpy188III	TCNNGA	2 cut(s)	188, 821
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	7 cut(s)	48, 154, 232, 434, 439, 523, 545
HpyCH4III	ACNGT	2 cut(s)	638, 795
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	7 cut(s)	371, 389, 404, 526, 604, 614, 707
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 323, 401, 407, 416, 508, 971
HpyF3I	CTNAG	6 cut(s)	178, 356, 411, 644, 777, 932
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	343, 596, 1027, 1033
Kzo9I	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
LmnI	GCTCC	1 cut(s)	962
Lsp1109I	GCAGC	2 cut(s)	388, 958
LweI	GCATC	4 cut(s)	158, 326, 382, 413
MaeI	CTAG	2 cut(s)	396, 503
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	942
MalI	GATC	6 cut(s)	87, 361, 489, 819, 939, 1037
MboI	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
MboII	GAAGA	8 cut(s)	33, 36, 266, 269, 289, 697, 728, 921
MhlI	GDGCHC	1 cut(s)	933
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	8 cut(s)	58, 61, 157, 301, 347, 639, 655, 828
MseI	TTAA	3 cut(s)	95, 473, 690
MslI	CAYNNNNRTG	2 cut(s)	294, 1028
MspA1I	CMGCKG	2 cut(s)	949, 971
MspR9I	CCNGG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	7 cut(s)	34, 323, 401, 407, 416, 508, 971
NdeII	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
NlaIII	CATG	4 cut(s)	343, 596, 1027, 1033
NlaIV	GGNNCC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	788
PfoI	TCCNGGA	1 cut(s)	861
PkrI	GCNGC	2 cut(s)	403, 973
PpuMI	RGGWCCY	1 cut(s)	532
PshBI	ATTAAT	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	933
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	73, 532
PspPPI	RGGWCCY	1 cut(s)	532
PstI	CTGCAG	2 cut(s)	391, 528
PstNI	CAGNNNCTG	2 cut(s)	826, 974
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	294, 1028
SacI	GAGCTC	1 cut(s)	933
SaqAI	TTAA	3 cut(s)	95, 473, 690
SatI	GCNGC	2 cut(s)	402, 972
Sau3AI	GATC	6 cut(s)	85, 359, 487, 817, 937, 1035
Sau96I	GGNCC	2 cut(s)	73, 532
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	4 cut(s)	158, 326, 382, 413
SfcI	CTRYAG	2 cut(s)	387, 524
SinI	GGWCC	2 cut(s)	73, 532
SmiMI	CAYNNNNRTG	2 cut(s)	294, 1028
SmlI	CTYRAG	2 cut(s)	186, 305
SmoI	CTYRAG	2 cut(s)	186, 305
SsiI	CCGC	3 cut(s)	130, 175, 949
SspI	AATATT	2 cut(s)	654, 679
SspMI	CTAG	2 cut(s)	396, 503
SstI	GAGCTC	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	861
TaaI	ACNGT	2 cut(s)	638, 795
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	65
TaqII	GACCGA	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	3 cut(s)	95, 473, 690
Tru9I	TTAA	3 cut(s)	95, 473, 690
TscAI	CASTG	3 cut(s)	30, 434, 964
TseI	GCWGC	2 cut(s)	401, 971
TspDTI	ATGAA	5 cut(s)	251, 471, 588, 729, 753
TspRI	CASTG	3 cut(s)	30, 434, 964
VpaK11BI	GGWCC	2 cut(s)	73, 532
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	1 cut(s)	985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
XspI	CTAG	2 cut(s)	396, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.