Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Reverse (-)

6996505 .. 7005537

Gene Structure 9033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCAGTGCCTTACAGAGTTGGATGGTCTGAGATCACAACTTGCAGCCACCCAAGCAACTGCAGATACTAGTGCTGCATCAGCTCAATCGGCACAGCTCCAATGTCTAGCACTTGTAAAGGAAATAGATCAAAAGAATTGTTCCTTGAAGGAGCAAGATGAACGTATAATTAGGCTAGGAGAGCAATTAGACAAACTACAGAAGGATCTTCAGGCAAGAGAGTCTTCACAAAAGCAACTGAAAGATGATGTTCTGAGAATTGAGCAGGACATTATGCAAGCTGTTGCACAAGCAGGGGTGAACAAGGATTGTGAGCTGAGGAAAATATTAGATGAAGTTTCTCCAAAGAATATTGAGAGGCTTAATAATCTTTTAGTTATAAAGGATGAAGAAATAGGAAAACTGAAAGATGAAATCAGGATAATGTCCGCTCACTGGACGCTGAAAACTAAGGAGTTAGAATCACAGTTGGAGAGACAACGGCGAGCTGATCAGGAACTGAAAAAGAGGGTATTGAAATTGGAGTTCTGCCTTCAGGAAGCTCGAGCTCAAACAAGAAAGCTTCAAAGGATGGGGGAGCGAAGAGATAAAGCTCTGAAAGAGCTCAGAGACCACTTACAACAACGGGGTGCGAGTGGAGCTTCATCTGCCGAAAGACCAAACTTTTGGGAAACCTCTGGTTTCAAAATCGTGGTTTCCATGTCGATGTTCGTCTTGGTTGTCTTCTCAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

28.1

Weight (kDa)

8.91

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	431
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	194, 518
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	148, 517, 566, 685
AhlI	ACTAGT	1 cut(s)	68
Alw21I	GWGCWC	2 cut(s)	550, 606
Alw26I	GTCTC	2 cut(s)	469, 603
AlwI	GGATC	1 cut(s)	213
AlwNI	CAGNNNCTG	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	543
ApeKI	GCWGC	2 cut(s)	44, 74
ArsI	GACNNNNNNTTYG	2 cut(s)	648, 680
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	543
BanII	GRGCYC	2 cut(s)	550, 606
BbsI	GAAGAC	2 cut(s)	216, 715
Bbv12I	GWGCWC	2 cut(s)	550, 606
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	56, 61
BccI	CCATC	2 cut(s)	17, 565
BceAI	ACGGC	1 cut(s)	497
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	469, 603
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	3 cut(s)	69, 107, 176
BfmI	CTRYAG	2 cut(s)	60, 197
BisI	GCNGC	2 cut(s)	45, 75
BlsI	GCNGC	2 cut(s)	46, 76
BmeT110I	CYCGRG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	216, 715
Bpu10I	CCTNAGC	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	440
BseGI	GGATG	3 cut(s)	28, 391, 576
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	4 cut(s)	20, 245, 308, 619
BseNI	ACTGG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	56, 61
BsiHKAI	GWGCWC	2 cut(s)	550, 606
BsiHKCI	CYCGRG	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	469, 603
Bso31I	GGTCTC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	550, 606
Bsp143I	GATC	4 cut(s)	32, 127, 205, 490
BspACI	CCGC	1 cut(s)	429
BspCNI	CTCAG	4 cut(s)	21, 246, 309, 618
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	603
BsrBI	CCGCTC	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	440
BssMI	GATC	4 cut(s)	32, 127, 205, 490
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	279, 486
BstDEI	CTNAG	5 cut(s)	29, 254, 317, 450, 605
BstF5I	GGATG	3 cut(s)	28, 391, 576
BstKTI	GATC	4 cut(s)	35, 130, 208, 493
BstMAI	GTCTC	2 cut(s)	469, 603
BstMBI	GATC	4 cut(s)	32, 127, 205, 490
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 80, 89, 181, 638, 647
BstSFI	CTRYAG	2 cut(s)	60, 197
BstV1I	GCAGC	2 cut(s)	56, 61
BstV2I	GAAGAC	2 cut(s)	216, 715
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	28, 391, 576
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 433
Cac8I	GCNNGC	2 cut(s)	279, 486
CaiI	CAGNNNCTG	1 cut(s)	499
CseI	GACGC	1 cut(s)	448
CviAII	CATG	1 cut(s)	700
DdeI	CTNAG	5 cut(s)	29, 254, 317, 450, 605
DpnI	GATC	4 cut(s)	34, 129, 207, 492
DpnII	GATC	4 cut(s)	32, 127, 205, 490
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Ecl136II	GAGCTC	2 cut(s)	548, 604
Eco24I	GRGCYC	2 cut(s)	550, 606
Eco31I	GGTCTC	1 cut(s)	603
Eco53kI	GAGCTC	2 cut(s)	548, 604
Eco57I	CTGAAG	2 cut(s)	194, 518
Eco88I	CYCGRG	1 cut(s)	543
EcoICRI	GAGCTC	2 cut(s)	548, 604
EcoT38I	GRGCYC	2 cut(s)	550, 606
FaeI	CATG	1 cut(s)	703
FaiI	YATR	4 cut(s)	167, 275, 380, 701
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	1 cut(s)	699
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	45, 75
FokI	GGATG	3 cut(s)	35, 398, 583
FriOI	GRGCYC	2 cut(s)	550, 606
Fsp4HI	GCNGC	2 cut(s)	45, 75
FspBI	CTAG	3 cut(s)	69, 107, 176
GluI	GCNGC	2 cut(s)	45, 75
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	2 cut(s)	221, 461
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	30, 255, 597, 608
Hpy188III	TCNNGA	3 cut(s)	418, 494, 536
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	142, 196, 542
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	4, 44, 62, 77, 277, 287
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 80, 89, 181, 638, 647
HpyF3I	CTNAG	5 cut(s)	29, 254, 317, 450, 605
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	32, 127, 205, 490
LmnI	GCTCC	4 cut(s)	102, 151, 577, 638
LpnPI	CCDG	8 cut(s)	197, 251, 279, 403, 421, 479, 521, 663
Lsp1109I	GCAGC	2 cut(s)	56, 61
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	3 cut(s)	69, 107, 176
MaeII	ACGT	1 cut(s)	163
MalI	GATC	4 cut(s)	34, 129, 207, 492
MbiI	CCGCTC	1 cut(s)	431
MboI	GATC	4 cut(s)	32, 127, 205, 490
MboII	GAAGA	5 cut(s)	200, 216, 401, 594, 715
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	550, 606
MluCI	AATT	5 cut(s)	136, 168, 185, 258, 518
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	4 cut(s)	312, 351, 501, 685
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	704
MwoI	GCNNNNNNNGC	6 cut(s)	53, 80, 89, 181, 638, 647
NdeII	GATC	4 cut(s)	32, 127, 205, 490
NlaIII	CATG	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	46, 76
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	380
Psp124BI	GAGCTC	2 cut(s)	550, 606
PspXI	VCTCGAGB	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	2 cut(s)	550, 606
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	45, 75
Sau3AI	GATC	4 cut(s)	32, 127, 205, 490
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	550, 606
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	2 cut(s)	60, 197
Sfr274I	CTCGAG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	5 cut(s)	136, 168, 185, 258, 518
SsiI	CCGC	1 cut(s)	429
SspI	AATATT	2 cut(s)	327, 352
SspMI	CTAG	3 cut(s)	69, 107, 176
SstI	GAGCTC	2 cut(s)	550, 606
TaaI	ACNGT	1 cut(s)	468
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	544, 704
TasI	AATT	5 cut(s)	136, 168, 185, 258, 518
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	440
TseI	GCWGC	2 cut(s)	44, 74
TspDTI	ATGAA	5 cut(s)	174, 348, 402, 426, 633
TspRI	CASTG	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	543
XspI	CTAG	3 cut(s)	69, 107, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.