Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Reverse (-)

4985251 .. 4989594

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAGAGGAGATTGGTAAATTGCAGAAGAGATTGGAACAGAGAAATCTGCAGCTTGAGGCTTCAACATCTAAAACTGAGAAGTGCCTCACAGAGTTGGATGGTCTGAGGTCACAACTTGCAGCAACTCAAGAAACTGCAGATACTTGTGCTGCATCAGCTCAATCGGCAAAGCTTCAATGTCTGGCACTTGTAAAGGAATTAGATCAAAAGAATTGTTCCTTGAAAGAGCAAGATGAACGTATAATTAGGCTAGGAGAACAATTAGACAAACTACAGAAGGATCTTCAGGCAAGAGAGTCTTCGCAAAAGCAACTGAAAGATGACGTTCTGAGAATTGAGCAGGACATTATGCAAGCTGTTGCACAAGCAGGGGTTAATAAGGATTGTGAGCTGAGGAAAATATTAGATGAGGTTTCTCCAAAGAATATCGAGAAGCTTAATAATCTTTTAGTTATAAAGGATGAAGAAATAGGAAAGCTGAAAGATGAAATCAGGATAATGTCTGCTCACTGGACGCTCAAGACAAAAGAGTTAGAATCACAGTTGGAGAGACAACGGCGAGCTGATCAGGAACTCAAAAAGAGGGTATTGAAATTGGAGTTCTGCCTTCAGGAAGCTCGTGCTCAAACAAGAAAGCTTCAAAGGATGGGTGAGCGAAGAGACAAAGCTCTGAAAGAGCTCAAAGACCAGTTACAACAACAGGGTGGGGCTGGTGCTTCACCTGCGGAAAGACCAAACTTTTGGGAAACCTCTGGTTTCAAAATTGTGGTTTCCATGTCCATGTTCATCTTAGTTGTCTTCTCAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.12

Weight (kDa)

8.63

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AarI	CACCTGC	1 cut(s)	733
Acc36I	ACCTGC	1 cut(s)	733
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	1 cut(s)	291
AcuI	CTGAAG	2 cut(s)	272, 596
AgsI	TTSAA	6 cut(s)	66, 179, 226, 595, 644, 763
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
Alw21I	GWGCWC	2 cut(s)	628, 684
Alw26I	GTCTC	2 cut(s)	547, 657
AlwI	GGATC	1 cut(s)	291
ApeKI	GCWGC	3 cut(s)	52, 122, 152
ArsI	GACNNNNNNTTYG	2 cut(s)	726, 758
AsuHPI	GGTGA	2 cut(s)	665, 714
BanII	GRGCYC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	2 cut(s)	294, 793
Bbv12I	GWGCWC	2 cut(s)	628, 684
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	64, 134, 139
BccI	CCATC	2 cut(s)	95, 643
BceAI	ACGGC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	547, 657
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	3 cut(s)	50, 138, 275
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	3 cut(s)	53, 123, 153
BlsI	GCNGC	3 cut(s)	54, 124, 154
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	294, 793
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	3 cut(s)	77, 114, 506
Bse1I	ACTGG	2 cut(s)	518, 691
BseGI	GGATG	3 cut(s)	106, 469, 654
BseMII	CTCAG	4 cut(s)	69, 98, 323, 386
BseNI	ACTGG	2 cut(s)	518, 691
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	64, 134, 139
BsiHKAI	GWGCWC	2 cut(s)	628, 684
BsmAI	GTCTC	2 cut(s)	547, 657
Bsp1286I	GDGCHC	2 cut(s)	628, 684
Bsp143I	GATC	3 cut(s)	205, 283, 568
BspACI	CCGC	1 cut(s)	728
BspCNI	CTCAG	4 cut(s)	70, 99, 324, 387
BspMAI	CTGCAG	2 cut(s)	54, 142
BspMI	ACCTGC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	518, 691
BssMI	GATC	3 cut(s)	205, 283, 568
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	2 cut(s)	23, 655
BstC8I	GCNNGC	2 cut(s)	357, 564
BstDEI	CTNAG	5 cut(s)	78, 107, 332, 395, 793
BstF5I	GGATG	3 cut(s)	106, 469, 654
BstKTI	GATC	3 cut(s)	208, 286, 571
BstMAI	GTCTC	2 cut(s)	547, 657
BstMBI	GATC	3 cut(s)	205, 283, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 167, 725
BstSFI	CTRYAG	3 cut(s)	50, 138, 275
BstV1I	GCAGC	3 cut(s)	64, 134, 139
BstV2I	GAAGAC	2 cut(s)	294, 793
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	106, 469, 654
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	2 cut(s)	357, 564
CseI	GACGC	1 cut(s)	526
CviAII	CATG	2 cut(s)	778, 784
DdeI	CTNAG	5 cut(s)	78, 107, 332, 395, 793
DpnI	GATC	3 cut(s)	207, 285, 570
DpnII	GATC	3 cut(s)	205, 283, 568
Eam1104I	CTCTTC	2 cut(s)	23, 655
EarI	CTCTTC	2 cut(s)	23, 655
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	272, 596
EcoICRI	GAGCTC	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	2 cut(s)	781, 787
FaiI	YATR	5 cut(s)	245, 353, 458, 779, 785
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FatI	CATG	2 cut(s)	777, 783
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	53, 123, 153
FokI	GGATG	3 cut(s)	113, 476, 661
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	3 cut(s)	53, 123, 153
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	3 cut(s)	53, 123, 153
HgaI	GACGC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	781, 787
HindIII	AAGCTT	3 cut(s)	173, 437, 638
HinfI	GANTC	2 cut(s)	299, 539
HphI	GGTGA	2 cut(s)	665, 714
Hpy188I	TCNGA	3 cut(s)	108, 333, 675
Hpy188III	TCNNGA	6 cut(s)	131, 433, 496, 523, 572, 614
HpyAV	CCTTC	2 cut(s)	274, 620
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	2 cut(s)	241, 327
HpyCH4V	TGCA	7 cut(s)	25, 52, 122, 140, 155, 355, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 167, 725
HpyF3I	CTNAG	5 cut(s)	78, 107, 332, 395, 793
HpySE526I	ACGT	2 cut(s)	241, 327
Hsp92II	CATG	2 cut(s)	781, 787
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	205, 283, 568
Lsp1109I	GCAGC	3 cut(s)	64, 134, 139
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	2 cut(s)	241, 327
MaeIII	GTNAC	2 cut(s)	111, 693
MalI	GATC	3 cut(s)	207, 285, 570
MboI	GATC	3 cut(s)	205, 283, 568
MboII	GAAGA	7 cut(s)	17, 40, 278, 294, 479, 672, 793
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	628, 684
MluCI	AATT	8 cut(s)	20, 200, 214, 246, 263, 336, 596, 765
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	78, 528
MnlI	CCTC	7 cut(s)	52, 98, 102, 390, 406, 579, 763
MseI	TTAA	2 cut(s)	378, 441
MslI	CAYNNNNRTG	1 cut(s)	782
MwoI	GCNNNNNNNGC	3 cut(s)	158, 167, 725
NdeII	GATC	3 cut(s)	205, 283, 568
NlaIII	CATG	2 cut(s)	781, 787
NmuCI	GTSAC	1 cut(s)	111
PaqCI	CACCTGC	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	54, 124, 154
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	684
PstI	CTGCAG	2 cut(s)	54, 142
PsuI	RGATCY	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	782
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	378, 441
SatI	GCNGC	3 cut(s)	53, 123, 153
Sau3AI	GATC	3 cut(s)	205, 283, 568
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	628, 684
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	3 cut(s)	50, 138, 275
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	3 cut(s)	56, 129, 521
SmoI	CTYRAG	3 cut(s)	56, 129, 521
Sse9I	AATT	8 cut(s)	20, 200, 214, 246, 263, 336, 596, 765
SsiI	CCGC	1 cut(s)	728
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	2 cut(s)	244, 330
TaqI	TCGA	1 cut(s)	432
TasI	AATT	8 cut(s)	20, 200, 214, 246, 263, 336, 596, 765
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	378, 441
Tru9I	TTAA	2 cut(s)	378, 441
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	3 cut(s)	52, 122, 152
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	4 cut(s)	252, 480, 504, 778
TspRI	CASTG	1 cut(s)	518
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.