Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Forward (+)

27779605 .. 27783880

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1187100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTCAATTTCGGAGAAATCAAGGCCGTGCTCAGCTTCCTCATCACTGTCACCGATGTCAGTCCACGATTTTGATCCGTTGCTGAAAGATTTGAATGAGAGGAAGCAGAGTTTTCGCCGGAATGTGGTGTCGTTGGCATCGGAGTTGAAAGATGTTCGGAGCCGGTTAGCGTCTCAGGAGCAATCATTTGTTAAAGAAACCCTTACAAGACAGGAAGCAGAGACAAAGGCCAAACACTTGGAAGAGGAGATTAGCATAATGCAGAAGAGAGTGGAACAAAGAAATCAGCAGCTTGAGGTCTCAGCATCTGCGGCTGAGAAGTTCCTCACGGAATTGGATGGTCTGAGATCGCAACTTTCAGCCACCCAAGCAACTGCGGATATTAGTGCTGCATCAGCTCAATCGGCACAGCTTCAGTGTTTAGCACTTTTGAAGGAATTAGATGAAAAGAACTGCTCGTTAAAAGAGCAAGATGATCGTGTAATTAGGCTAGGAGAGCAATTAGATAATCTGCAGAAGGATCTTAAGGCTAGAGAGTGTTCCCAGAAGCAACTGAAAGATGAAGTTTTGAGAATTGAGAATGACATTATGCAAGCTATCGCAAAAGCGGGGGTGAACAAGGACTGTGAGCTGCGGAAAATATTGGATGAGGTATCTCCGAAGAATATTGAGAAGATCAATAAGCTTTTAGTTGTGAAGGATGAAGAAATAGCAAAACTGAAAGATGAAATCAGGGTAATGTCTGCTCATTGGAAGCTCAAAACTAAGGAGTTTGAATCACAGTTGGAGAAACAACGACGCATTGATCAGGAACTGAAAAAGAGGGTCTTGAAATTAGAGTTTTGTCTCCAGGAAGCTCGTGCTCAAACGCGAAAGCTTCAAAGGATGGGTGAGCGGAGAGACAAGGCTCTGAAAGAGCTCAAAGATCAGTTACAGCGGGGTGGTGGTGGAGCTGCAGCTGCTGAAAGACAAAACTTTTGGGAAACCTCCGGTTTCAAAATCATGATGTCTATGTCCATGTTGATCTTGGTGGTGTTCTCAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

39.97

Weight (kDa)

9.05

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	895
AccII	CGCG	1 cut(s)	871
AciI	CCGC	6 cut(s)	311, 377, 608, 634, 895, 937
AclWI	GGATC	2 cut(s)	68, 528
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	7 cut(s)	94, 148, 433, 776, 832, 881, 997
AjnI	CCWGG	1 cut(s)	849
Alw21I	GWGCWC	3 cut(s)	32, 865, 921
Alw26I	GTCTC	5 cut(s)	177, 215, 304, 851, 894
AlwI	GGATC	2 cut(s)	68, 528
AlwNI	CAGNNNCTG	3 cut(s)	308, 814, 962
AoxI	GGCC	2 cut(s)	23, 228
ApeKI	GCWGC	6 cut(s)	289, 389, 631, 953, 956, 959
ArsI	GACNNNNNNTTYG	2 cut(s)	960, 992
AsuHPI	GGTGA	3 cut(s)	42, 625, 902
BanII	GRGCYC	1 cut(s)	921
BauI	CACGAG	1 cut(s)	858
Bbv12I	GWGCWC	3 cut(s)	32, 865, 921
BbvI	GCAGC	6 cut(s)	301, 376, 618, 940, 946, 968
BccI	CCATC	2 cut(s)	332, 880
BceAI	ACGGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	4 cut(s)	95, 129, 458, 492
BciT130I	CCWGG	1 cut(s)	851
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	5 cut(s)	177, 215, 304, 851, 894
BfaI	CTAG	2 cut(s)	491, 531
BfmI	CTRYAG	2 cut(s)	512, 954
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	7 cut(s)	290, 312, 390, 632, 954, 957, 960
BlpI	GCTNAGC	1 cut(s)	31
BlsI	GCNGC	7 cut(s)	291, 313, 391, 633, 955, 958, 961
Bme1390I	CCNGG	1 cut(s)	851
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	3 cut(s)	146, 314, 401
BpmI	CTGGAG	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	989
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	851
BseGI	GGATG	4 cut(s)	343, 652, 706, 891
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	5 cut(s)	45, 188, 306, 315, 335
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	6 cut(s)	301, 376, 618, 940, 946, 968
Bsh1236I	CGCG	1 cut(s)	871
BshFI	GGCC	2 cut(s)	25, 230
BsiHKAI	GWGCWC	3 cut(s)	32, 865, 921
BsiSI	CCGG	3 cut(s)	118, 163, 990
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	5 cut(s)	177, 215, 304, 851, 894
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	25, 230
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	3 cut(s)	32, 865, 921
Bsp143I	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
Bsp1720I	GCTNAGC	1 cut(s)	31
BspACI	CCGC	6 cut(s)	311, 377, 608, 634, 895, 937
BspANI	GGCC	2 cut(s)	25, 230
BspCNI	CTCAG	5 cut(s)	44, 187, 307, 314, 336
BspFNI	CGCG	1 cut(s)	871
BspHI	TCATGA	1 cut(s)	1002
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	2 cut(s)	516, 958
BspPI	GGATC	2 cut(s)	68, 528
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	162
BssMI	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
BssSI	CACGAG	1 cut(s)	858
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	3 cut(s)	48, 626, 783
Bst6I	CTCTTC	2 cut(s)	237, 260
BstAFI	CTTAAG	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	6 cut(s)	31, 174, 301, 315, 344, 765
BstF5I	GGATG	4 cut(s)	343, 652, 706, 891
BstFNI	CGCG	1 cut(s)	871
BstKTI	GATC	8 cut(s)	76, 350, 478, 523, 678, 808, 928, 1026
BstMAI	GTCTC	5 cut(s)	177, 215, 304, 851, 894
BstMBI	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
BstMWI	GCNNNNNNNGC	6 cut(s)	311, 368, 395, 404, 496, 959
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	2 cut(s)	512, 954
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	6 cut(s)	301, 376, 618, 940, 946, 968
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	25, 230
BtsCI	GGATG	4 cut(s)	343, 652, 706, 891
BtsIMutI	CAGTG	2 cut(s)	44, 422
Cac8I	GCNNGC	1 cut(s)	594
CaiI	CAGNNNCTG	3 cut(s)	308, 814, 962
CciI	TCATGA	1 cut(s)	1002
Cfr10I	RCCGGY	1 cut(s)	162
CseI	GACGC	2 cut(s)	159, 807
CviAII	CATG	2 cut(s)	1003, 1018
DdeI	CTNAG	6 cut(s)	31, 174, 301, 315, 344, 765
DpnI	GATC	8 cut(s)	75, 349, 477, 522, 677, 807, 927, 1025
DpnII	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
Eam1104I	CTCTTC	2 cut(s)	237, 260
EarI	CTCTTC	2 cut(s)	237, 260
Ecl136II	GAGCTC	1 cut(s)	919
Eco24I	GRGCYC	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	921
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	2 cut(s)	1006, 1021
FaiI	YATR	5 cut(s)	257, 590, 1004, 1013, 1019
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 812, 844
FatI	CATG	2 cut(s)	1002, 1017
FauI	CCCGC	2 cut(s)	601, 930
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	7 cut(s)	290, 312, 390, 632, 954, 957, 960
FokI	GGATG	4 cut(s)	350, 659, 713, 898
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	7 cut(s)	290, 312, 390, 632, 954, 957, 960
FspBI	CTAG	2 cut(s)	491, 531
GluI	GCNGC	7 cut(s)	290, 312, 390, 632, 954, 957, 960
GsuI	CTGGAG	1 cut(s)	833
HaeIII	GGCC	2 cut(s)	25, 230
HapII	CCGG	3 cut(s)	118, 163, 990
HgaI	GACGC	2 cut(s)	159, 807
Hin1II	CATG	2 cut(s)	1006, 1021
HindIII	AAGCTT	2 cut(s)	683, 875
HinfI	GANTC	1 cut(s)	776
HpaII	CCGG	3 cut(s)	118, 163, 990
HphI	GGTGA	3 cut(s)	42, 625, 902
Hpy166II	GTNNAC	2 cut(s)	64, 616
Hpy188I	TCNGA	6 cut(s)	13, 142, 159, 345, 660, 912
Hpy188III	TCNNGA	4 cut(s)	176, 809, 829, 1003
Hpy8I	GTNNAC	2 cut(s)	64, 616
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	3 cut(s)	427, 511, 691
HpyCH4III	ACNGT	3 cut(s)	48, 626, 783
HpyCH4V	TGCA	5 cut(s)	262, 392, 514, 592, 956
HpyF10VI	GCNNNNNNNGC	6 cut(s)	311, 368, 395, 404, 496, 959
HpyF3I	CTNAG	6 cut(s)	31, 174, 301, 315, 344, 765
Hsp92II	CATG	2 cut(s)	1006, 1021
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
LmnI	GCTCC	3 cut(s)	159, 178, 950
Lsp1109I	GCAGC	6 cut(s)	301, 376, 618, 940, 946, 968
LweI	GCATC	3 cut(s)	146, 314, 401
MaeI	CTAG	2 cut(s)	491, 531
MaeIII	GTNAC	2 cut(s)	48, 930
MalI	GATC	8 cut(s)	75, 349, 477, 522, 677, 807, 927, 1025
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
MboII	GAAGA	5 cut(s)	254, 277, 673, 685, 716
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	3 cut(s)	32, 865, 921
MluCI	AATT	7 cut(s)	6, 332, 437, 483, 500, 573, 833
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	8 cut(s)	49, 93, 238, 289, 335, 643, 816, 997
MseI	TTAA	3 cut(s)	192, 461, 525
MspA1I	CMGCKG	2 cut(s)	937, 959
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	3 cut(s)	118, 163, 990
MspR9I	CCNGG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	6 cut(s)	311, 368, 395, 404, 496, 959
NdeII	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
NlaIII	CATG	2 cut(s)	1006, 1021
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	48
PagI	TCATGA	1 cut(s)	1002
PfeI	GAWTC	1 cut(s)	776
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	7 cut(s)	291, 313, 391, 633, 955, 958, 961
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	1 cut(s)	161
PstI	CTGCAG	2 cut(s)	516, 958
PstNI	CAGNNNCTG	3 cut(s)	308, 814, 962
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	959
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	3 cut(s)	192, 461, 525
SatI	GCNGC	7 cut(s)	290, 312, 390, 632, 954, 957, 960
Sau3AI	GATC	8 cut(s)	73, 347, 475, 520, 675, 805, 925, 1023
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	3 cut(s)	32, 865, 921
SfaNI	GCATC	3 cut(s)	146, 314, 401
SfcI	CTRYAG	2 cut(s)	512, 954
SmlI	CTYRAG	2 cut(s)	293, 524
SmoI	CTYRAG	2 cut(s)	293, 524
Sse9I	AATT	7 cut(s)	6, 332, 437, 483, 500, 573, 833
SsiI	CCGC	6 cut(s)	311, 377, 608, 634, 895, 937
SspI	AATATT	2 cut(s)	642, 667
SspMI	CTAG	2 cut(s)	491, 531
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	849
TaaI	ACNGT	3 cut(s)	48, 626, 783
TasI	AATT	7 cut(s)	6, 332, 437, 483, 500, 573, 833
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	3 cut(s)	192, 461, 525
Tru9I	TTAA	3 cut(s)	192, 461, 525
TscAI	CASTG	2 cut(s)	51, 422
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	6 cut(s)	289, 389, 631, 953, 956, 959
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	4 cut(s)	459, 576, 717, 741
TspGWI	ACGGA	2 cut(s)	66, 344
TspRI	CASTG	2 cut(s)	51, 422
Vha464I	CTTAAG	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1024
XspI	CTAG	2 cut(s)	491, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.