Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Reverse (-)

9618392 .. 9620588

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTTATGTTGTTACATAGTGTGGGACTAATTCCATGTTCAAACCAACAAAAGTCTTTTCTCTTCCATAGTTATTACCGTTACAGATGCATAGTTTGTTCATCTGAAACAGGTTTGTCCATAAGAAGACAAGCTTTGGAGCAAGTTGATTCTAAGTTGTCTAGTGGAGACGAAAGAGCTGCATTGTCTCTTGTCAAAGATCTCCAAGGAAAACCTGATGGCCTTCGATGTTTTGGCGCTGCAAGGCAGGTGCCTCAGAGACTCTACACGTTGGAGGAACTGAAACTGAATGGTATTAACGCAGCTTCACTTCTCTCGCCAACAGATACAACGCTTGGCTCCATCGAAAGAAACCTTCAGATCGCAGCTGTCTCAGGGGGAATAGTTGCTTGGAAAGCCTTTGACTTGAGTTCTCAACAGCTTTTCTTTCTTACTCTTGGGTTTATGTTCCTGTGGACTTTGGATTTGGTCTCTTTTAATGGCGGAATTGGGAGTTTGGTTCTTGATACAACTGGTCATACGTTTAGCCAACGATACCATAACAGAGTTGTTCAGCACGAAGCGGGTCATTTCTTGGTGGCCTACTTAGTCGGGATTCTACCACGCGGATACACGCTCTCTAGCCTTGAAGCTTTACAGAAAGAAGGATCTCTCAACATTCAAGCTGGCTCAGCTTTTGTAGACTATGAATTCCTTGAAGAAGTTAATTCTGGAAAAGTCTCCGCTACGATGCTGAACAGATTCTCATGCATTGCTCTGGCTGGTGTAGCAACAGAATATCTCCTGTATGGTTATGCTGAAGGAGGCCTTGACGATATCAGCAAGTTAGATGGTTTGGTGAAGAGTTTGGGGTTCACACAGAAGAAAGCGGACTCGCAGGTGAGGTGGTCAGTCCTTAACACCATACTGCTACTACGTCGCCATGAGATAGCTCGATCGAAGCTCGCGCAGGCTATGTCCAAAGGAGAATCTGTCGGATCTTGTATCCAAATCATCGAAGATTCTATCGATCCTTCTGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.38

Weight (kDa)

6.39

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	238, 868
Acc36I	ACCTGC	2 cut(s)	238, 868
AccB1I	GGYRCC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	2 cut(s)	606, 947
AciI	CCGC	5 cut(s)	483, 563, 606, 723, 869
AclWI	GGATC	3 cut(s)	655, 985, 1004
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	2 cut(s)	341, 819
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	4 cut(s)	42, 629, 662, 698
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
Alw26I	GTCTC	6 cut(s)	162, 192, 253, 376, 475, 724
AlwI	GGATC	3 cut(s)	655, 985, 1004
AoxI	GGCC	3 cut(s)	220, 579, 805
ApeKI	GCWGC	4 cut(s)	179, 239, 302, 365
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	2 cut(s)	239, 949
AsuHPI	GGTGA	2 cut(s)	850, 892
BanI	GGYRCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	4 cut(s)	166, 226, 314, 377
BccI	CCATC	3 cut(s)	212, 350, 824
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciVI	GTATCC	2 cut(s)	602, 995
BcoDI	GTCTC	6 cut(s)	162, 192, 253, 376, 475, 724
BfaI	CTAG	3 cut(s)	162, 621, 1024
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	2 cut(s)	238, 868
BfuI	GTATCC	2 cut(s)	602, 995
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	180, 240, 303, 366
BlpI	GCTNAGC	1 cut(s)	670
BlsI	GCNGC	4 cut(s)	181, 241, 304, 367
BmiI	GGNNCC	2 cut(s)	252, 340
BmsI	GCATC	2 cut(s)	77, 720
BpiI	GAAGAC	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	1008
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	750
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	3 cut(s)	269, 387, 684
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	4 cut(s)	166, 226, 314, 377
Bsh1236I	CGCG	2 cut(s)	606, 947
Bsh1285I	CGRYCG	1 cut(s)	938
BshFI	GGCC	3 cut(s)	222, 581, 807
BshNI	GGYRCC	1 cut(s)	250
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	938
BslFI	GGGAC	1 cut(s)	39
BsmAI	GTCTC	6 cut(s)	162, 192, 253, 376, 475, 724
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	222, 581, 807
Bso31I	GGTCTC	1 cut(s)	475
Bsp143I	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
Bsp1720I	GCTNAGC	1 cut(s)	670
BspACI	CCGC	5 cut(s)	483, 563, 606, 723, 869
BspANI	GGCC	3 cut(s)	222, 581, 807
BspCNI	CTCAG	3 cut(s)	268, 386, 683
BspDI	ATCGAT	1 cut(s)	1008
BspFNI	CGCG	2 cut(s)	606, 947
BspLI	GGNNCC	2 cut(s)	252, 340
BspMI	ACCTGC	2 cut(s)	238, 868
BspPI	GGATC	3 cut(s)	655, 985, 1004
BspT107I	GGYRCC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	750
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	68, 836
BstC8I	GCNNGC	3 cut(s)	667, 945, 951
BstDEI	CTNAG	5 cut(s)	153, 255, 373, 586, 670
BstFNI	CGCG	2 cut(s)	606, 947
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 949
BstKTI	GATC	6 cut(s)	202, 363, 650, 938, 980, 1012
BstMAI	GTCTC	6 cut(s)	162, 192, 253, 376, 475, 724
BstMBI	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
BstMCI	CGRYCG	1 cut(s)	938
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 671, 767
BstUI	CGCG	2 cut(s)	606, 947
BstV1I	GCAGC	4 cut(s)	166, 226, 314, 377
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	3 cut(s)	199, 647, 977
BstYI	RGATCY	3 cut(s)	199, 647, 977
Bsu15I	ATCGAT	1 cut(s)	1008
BsuI	GTATCC	2 cut(s)	602, 995
BsuRI	GGCC	3 cut(s)	222, 581, 807
BsuTUI	ATCGAT	1 cut(s)	1008
BveI	ACCTGC	2 cut(s)	238, 868
Cac8I	GCNNGC	3 cut(s)	667, 945, 951
CfoI	GCGC	2 cut(s)	239, 949
ClaI	ATCGAT	1 cut(s)	1008
CviAII	CATG	3 cut(s)	36, 747, 923
DdeI	CTNAG	5 cut(s)	153, 255, 373, 586, 670
DpnI	GATC	6 cut(s)	201, 362, 649, 937, 979, 1011
DpnII	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
Eam1104I	CTCTTC	2 cut(s)	68, 836
EarI	CTCTTC	2 cut(s)	68, 836
EciI	GGCGGA	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	475
Eco32I	GATATC	2 cut(s)	817, 1021
Eco57I	CTGAAG	2 cut(s)	341, 819
EcoRI	GAATTC	1 cut(s)	689
EcoRV	GATATC	2 cut(s)	817, 1021
EcoT14I	CCWWGG	1 cut(s)	205
EcoT22I	ATGCAT	2 cut(s)	92, 752
ErhI	CCWWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	3 cut(s)	39, 750, 926
FalI	AAGNNNNNCTT	4 cut(s)	118, 150, 792, 824
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	35, 746, 922
FauI	CCCGC	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	4 cut(s)	180, 240, 303, 366
Fsp4HI	GCNGC	4 cut(s)	180, 240, 303, 366
FspBI	CTAG	3 cut(s)	162, 621, 1024
GlaI	GCGC	2 cut(s)	238, 948
GluI	GCNGC	4 cut(s)	180, 240, 303, 366
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	222, 581, 807
HhaI	GCGC	2 cut(s)	239, 949
Hin1II	CATG	3 cut(s)	39, 750, 926
Hin6I	GCGC	2 cut(s)	237, 947
HinP1I	GCGC	2 cut(s)	237, 947
HindIII	AAGCTT	2 cut(s)	132, 630
HinfI	GANTC	7 cut(s)	149, 261, 595, 741, 872, 968, 1001
HphI	GGTGA	2 cut(s)	850, 892
Hpy166II	GTNNAC	3 cut(s)	456, 682, 855
Hpy188I	TCNGA	5 cut(s)	106, 258, 360, 977, 1018
Hpy188III	TCNNGA	3 cut(s)	503, 592, 711
Hpy8I	GTNNAC	3 cut(s)	456, 682, 855
Hpy99I	CGWCG	1 cut(s)	921
HpyAV	CCTTC	5 cut(s)	233, 365, 638, 794, 1023
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	3 cut(s)	269, 521, 916
HpyCH4V	TGCA	4 cut(s)	90, 182, 242, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 671, 767
HpyF3I	CTNAG	5 cut(s)	153, 255, 373, 586, 670
HpySE526I	ACGT	3 cut(s)	269, 521, 916
Hsp92II	CATG	3 cut(s)	39, 750, 926
HspAI	GCGC	2 cut(s)	237, 947
Kzo9I	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
LmnI	GCTCC	2 cut(s)	139, 344
Lsp1109I	GCAGC	4 cut(s)	166, 226, 314, 377
LweI	GCATC	2 cut(s)	77, 720
MaeI	CTAG	3 cut(s)	162, 621, 1024
MaeII	ACGT	3 cut(s)	269, 521, 916
MaeIII	GTNAC	2 cut(s)	12, 80
MalI	GATC	6 cut(s)	201, 362, 649, 937, 979, 1011
MboI	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
MboII	GAAGA	6 cut(s)	55, 138, 710, 853, 874, 1010
MflI	RGATCY	3 cut(s)	199, 647, 977
MluCI	AATT	4 cut(s)	30, 486, 689, 706
MlyI	GAGTC	2 cut(s)	255, 866
MmeI	TCCRAC	2 cut(s)	252, 955
MnlI	CCTC	4 cut(s)	264, 268, 797, 876
Mph1103I	ATGCAT	2 cut(s)	92, 752
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	4 cut(s)	297, 477, 705, 897
MspA1I	CMGCKG	1 cut(s)	368
MvnI	CGCG	2 cut(s)	606, 947
MwoI	GCNNNNNNNGC	3 cut(s)	395, 671, 767
NdeII	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
NlaIII	CATG	3 cut(s)	39, 750, 926
NlaIV	GGNNCC	2 cut(s)	252, 340
NsiI	ATGCAT	2 cut(s)	92, 752
PaqCI	CACCTGC	2 cut(s)	238, 868
PceI	AGGCCT	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	5 cut(s)	149, 595, 741, 968, 1001
PkrI	GCNGC	4 cut(s)	181, 241, 304, 367
Ple19I	CGATCG	1 cut(s)	938
PleI	GAGTC	2 cut(s)	255, 866
PpsI	GAGTC	2 cut(s)	255, 866
PspN4I	GGNNCC	2 cut(s)	252, 340
PsuI	RGATCY	3 cut(s)	199, 647, 977
PvuI	CGATCG	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	297, 477, 705, 897
SatI	GCNGC	4 cut(s)	180, 240, 303, 366
Sau3AI	GATC	6 cut(s)	199, 360, 647, 935, 977, 1009
SchI	GAGTC	2 cut(s)	255, 866
SfaNI	GCATC	2 cut(s)	77, 720
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	4 cut(s)	30, 486, 689, 706
SseBI	AGGCCT	1 cut(s)	807
SsiI	CCGC	5 cut(s)	483, 563, 606, 723, 869
SspMI	CTAG	3 cut(s)	162, 621, 1024
StuI	AGGCCT	1 cut(s)	807
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	3 cut(s)	272, 524, 919
TaqI	TCGA	6 cut(s)	226, 345, 934, 938, 996, 1008
TasI	AATT	4 cut(s)	30, 486, 689, 706
TfiI	GAWTC	5 cut(s)	149, 595, 741, 968, 1001
Tru1I	TTAA	4 cut(s)	297, 477, 705, 897
Tru9I	TTAA	4 cut(s)	297, 477, 705, 897
TseI	GCWGC	4 cut(s)	179, 239, 302, 365
TspDTI	ATGAA	2 cut(s)	90, 702
XapI	RAATTY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	3 cut(s)	162, 621, 1024
Zsp2I	ATGCAT	2 cut(s)	92, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.