Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Reverse (-)

2727002 .. 2729758

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGTACTTTGATGCATTGCTTATCATCTAAACTGAGATTTCCCACTTCTGGAATCATATTATGCTCATCATCCTCTGAGATTAGTGTGTCAAGGCAGCAAGTTTTGAAGCAAGTGGATAAGCAGTTGGCTAAAGGGGATGAGAGGGCAGCTCTCTCCCTTGTTAAAGATTTGCAGGGCAAGCCTGGTGGCCTCAGATGCTTTGGTGCTGCTAGGCAGGTGCCTCAAAGGCTTTACACTTTGGATGAGCTGAAGCTGAATGGAATAGTAACACAGTCGCTTCTGTCACCGGTGGATACTACTCTTGGTTCCATAGAAAGAAACCTTCAGATTGCTGCTGTGGTAGGAGGTGTTTCTGCTTGGAACGTTTTTGGGTTTACTCCTCAGCAGCTTTTCTACGTCTCTTTAGCAGCATTGTTTTTGTGGACTCTGGACGCGATTTCTTTCAATGGAGGAGTTAGTAGCTTGGCTATTGATACAATTGGTCACACCTTTAGTCAGAAGTACCGCAATAGAGTCATTCAGCATGAAGCTGGCCATTTCTTGATTGCTTACTTGCTTGGTATTCTCCCGAAGGGATATACACTAACTAGTCTGGATGCGTTCAAGAAGGAAGGGTCTCTCAATGTTCAAGCAGGGACAGCGTTTGTGGATATTGAGTTTGTTGAGGAGGTTAATGCAGGCAAAGTATCAGCAACTATTTGCGTGCATAGCGCTCGCGGGTGTTGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

26.34

Weight (kDa)

8.92

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	220
AccII	CGCG	2 cut(s)	437, 720
AciI	CCGC	2 cut(s)	508, 720
AclI	AACGTT	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	535
AcuI	CTGAAG	2 cut(s)	272, 311
AfaI	GTAC	2 cut(s)	7, 506
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	109, 448, 607, 632
AhlI	ACTAGT	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	6 cut(s)	152, 250, 256, 391, 465, 533
AluI	AGCT	6 cut(s)	152, 250, 256, 391, 465, 533
Alw26I	GTCTC	2 cut(s)	406, 624
Aor51HI	AGCGCT	1 cut(s)	715
AoxI	GGCC	2 cut(s)	190, 535
ApeKI	GCWGC	6 cut(s)	97, 149, 209, 335, 388, 410
AsiGI	ACCGGT	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	716
AsuHPI	GGTGA	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	109, 161, 196, 322, 400, 422
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	406, 624
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	2 cut(s)	213, 591
BfoI	RGCGCY	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	6 cut(s)	98, 150, 210, 336, 389, 411
BlsI	GCNGC	6 cut(s)	99, 151, 211, 337, 390, 412
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	222, 310
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	3, 188, 589
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
Bpu10I	CCTNAGC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	624
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	186
BseGI	GGATG	4 cut(s)	71, 145, 250, 604
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	4 cut(s)	26, 69, 208, 398
BseRI	GAGGAG	3 cut(s)	372, 468, 683
BseXI	GCAGC	6 cut(s)	109, 161, 196, 322, 400, 422
Bsh1236I	CGCG	2 cut(s)	437, 720
BshFI	GGCC	2 cut(s)	192, 537
BshNI	GGYRCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	406, 624
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	2 cut(s)	192, 537
Bso31I	GGTCTC	1 cut(s)	624
BspACI	CCGC	2 cut(s)	508, 720
BspANI	GGCC	2 cut(s)	192, 537
BspCNI	CTCAG	4 cut(s)	27, 70, 207, 397
BspFNI	CGCG	2 cut(s)	437, 720
BspLI	GGNNCC	2 cut(s)	222, 310
BspMI	ACCTGC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	276
BstC8I	GCNNGC	5 cut(s)	182, 535, 682, 707, 718
BstDEI	CTNAG	4 cut(s)	35, 78, 194, 384
BstF5I	GGATG	4 cut(s)	71, 145, 250, 604
BstFNI	CGCG	2 cut(s)	437, 720
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstMAI	GTCTC	2 cut(s)	406, 624
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 198, 229, 641, 711
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	437, 720
BstV1I	GCAGC	6 cut(s)	109, 161, 196, 322, 400, 422
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	192, 537
BtsCI	GGATG	4 cut(s)	71, 145, 250, 604
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	5 cut(s)	182, 535, 682, 707, 718
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	289
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	6, 505
CspAI	ACCGGT	1 cut(s)	289
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	2 cut(s)	6, 505
DdeI	CTNAG	4 cut(s)	35, 78, 194, 384
EaeI	YGGCCR	1 cut(s)	535
Eco31I	GGTCTC	1 cut(s)	624
Eco47III	AGCGCT	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	272, 311
EcoRII	CCWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	1 cut(s)	530
FaiI	YATR	6 cut(s)	59, 64, 314, 528, 582, 711
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	1 cut(s)	526
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	6 cut(s)	98, 150, 210, 336, 389, 411
FokI	GGATG	4 cut(s)	58, 152, 257, 611
Fsp4HI	GCNGC	6 cut(s)	98, 150, 210, 336, 389, 411
FspBI	CTAG	2 cut(s)	213, 591
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	6 cut(s)	98, 150, 210, 336, 389, 411
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	192, 537
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	716
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HinfI	GANTC	3 cut(s)	54, 427, 516
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	2 cut(s)	378, 426
Hpy188I	TCNGA	4 cut(s)	79, 197, 330, 501
Hpy188III	TCNNGA	6 cut(s)	51, 431, 544, 571, 596, 607
Hpy8I	GTNNAC	2 cut(s)	378, 426
HpyAV	CCTTC	4 cut(s)	335, 568, 604, 608
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	2 cut(s)	366, 399
HpyCH4V	TGCA	4 cut(s)	16, 175, 680, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 198, 229, 641, 711
HpyF3I	CTNAG	4 cut(s)	35, 78, 194, 384
HpySE526I	ACGT	2 cut(s)	366, 399
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	1 cut(s)	714
Lsp1109I	GCAGC	6 cut(s)	109, 161, 196, 322, 400, 422
LweI	GCATC	3 cut(s)	3, 188, 589
MaeI	CTAG	2 cut(s)	213, 591
MaeII	ACGT	2 cut(s)	366, 399
MaeIII	GTNAC	3 cut(s)	268, 285, 485
MfeI	CAATTG	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	1 cut(s)	480
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	421, 525
MnlI	CCTC	9 cut(s)	85, 138, 203, 234, 341, 393, 446, 661, 664
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	165, 675
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	437, 720
MwoI	GCNNNNNNNGC	5 cut(s)	181, 198, 229, 641, 711
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	2 cut(s)	222, 310
NmuCI	GTSAC	2 cut(s)	285, 485
NsiI	ATGCAT	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	54
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	6 cut(s)	99, 151, 211, 337, 390, 412
PleI	GAGTC	2 cut(s)	421, 524
PpsI	GAGTC	2 cut(s)	421, 524
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	222, 310
RsaI	GTAC	2 cut(s)	7, 506
RsaNI	GTAC	2 cut(s)	6, 505
SaqAI	TTAA	2 cut(s)	165, 675
SatI	GCNGC	6 cut(s)	98, 150, 210, 336, 389, 411
SchI	GAGTC	2 cut(s)	421, 525
ScrFI	CCNGG	1 cut(s)	186
SfaNI	GCATC	3 cut(s)	3, 188, 589
SgrAI	CRCCGGYG	1 cut(s)	289
SpeI	ACTAGT	1 cut(s)	590
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	2 cut(s)	508, 720
SspMI	CTAG	2 cut(s)	213, 591
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	2 cut(s)	369, 402
TasI	AATT	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	165, 675
Tru9I	TTAA	2 cut(s)	165, 675
TseFI	GTSAC	2 cut(s)	285, 485
TseI	GCWGC	6 cut(s)	97, 149, 209, 335, 388, 410
Tsp45I	GTSAC	2 cut(s)	285, 485
TspDTI	ATGAA	1 cut(s)	543
XspI	CTAG	2 cut(s)	213, 591
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.