Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Forward (+)

28978794 .. 28982312

Gene Structure 3519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGCACTGTGATGCATTGCTATGCAGGCTCATCATACAGACCCCAACTCCAACTGAGCCTGAGATTTCCCAGTTTTGGCATCATATGTTCATCTGAGGTTAGTGTATCAAGGCAACAAGTTTTGAAGCAAGTGGATAAGGAGTTGGATAAGGGAGATGAGAGAGCAGCGCTCTCACTTGTTAAAGATGTGCAAGGCAAGCCTGGTGGCCTCAGGTGCTTTGGTGCTGCTAGGCAGGTACCCCAAAGGCTCTACAGCTTGGATGAGCTAAAGCTGAATGGGATAGAAGCGTCGTCTCTTCTGTCCCCAGTAGATACTACTCTGGGTTCCATAGAAAGAAACCTTCAGCTTGCTGCTGTGCTGGGAGGTGTTTCTGCATGGAATGTGTTTGGGTTTAGTGCACAACAGATTTTCTATATTTCTTTAGGATTGTTGTTTCTGTGGACTCTCGACGCGGTATCTTTCAATGGAGGAGTTAGTAGCTTGGTAATTGATACAATTGGTCACACCTTTAGTCAGAAATACCACAACAGGGTCATTCAACATGAAGCTGGCCATTTCTTAATTGCATACTTGGTTGGCATCCTTCCTAAGGGATATACACTATCCAGTTTGGAAGCTTTGAAGAAGGAAGGATCTCTCAATGTTCAAGCAGGGACTGCTTTTGTGGATTTTGAATTTGTTGAAGAGGTCAATGCAGGGAAAGTATCAGCTACCACGCTGAACAGATTTGCATGCGTAGCGCTAGCCGGCGTTGCTGCTGAGTATATTTTATACGGCTATGCTGAGGGTGGTCTTGCAGATATTAACCAGCTGGATTCATTGTACAGAAGCTTAGGCTTCACACAGAAGAAAACAGATTCTCAAGTCAGATGGTCTGTCTTAAACACTGTCCTAATCTTGCGCCGTCATGAAGTAGTGCGAGCTAAACTTGCAGAGGCCATGTCAGAAGGAAAATCTGTAGGATCTTGCATTGATGTCATAGAGGACACCATTGGCAATGCAGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

36.54

Weight (kDa)

6.1

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	1 cut(s)	455
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	643, 973
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	240, 827
AfeI	AGCGCT	2 cut(s)	171, 744
AfiI	CCNNNNNNNGG	3 cut(s)	77, 532, 592
AgsI	TTSAA	7 cut(s)	127, 466, 542, 625, 650, 677, 686
AjnI	CCWGG	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	643, 973
AlwNI	CAGNNNCTG	1 cut(s)	659
Aor51HI	AGCGCT	2 cut(s)	171, 744
AoxI	GGCC	3 cut(s)	208, 553, 939
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	4 cut(s)	167, 227, 353, 758
ApoI	RAATTY	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	238
AspLEI	GCGC	3 cut(s)	172, 745, 906
AsuNHI	GCTAGC	1 cut(s)	745
AxyI	CCTNAGG	2 cut(s)	212, 591
BaeGI	GKGCMC	2 cut(s)	8, 403
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	403
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	179, 214, 340, 745
BccI	CCATC	1 cut(s)	867
BceAI	ACGGC	2 cut(s)	793, 891
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	231, 746
BfmI	CTRYAG	2 cut(s)	253, 960
BfoI	RGCGCY	2 cut(s)	173, 746
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	4 cut(s)	168, 228, 354, 759
BlsI	GCNGC	4 cut(s)	169, 229, 355, 760
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	240, 328
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	2 cut(s)	66, 302
BmsI	GCATC	3 cut(s)	3, 90, 591
BmtI	GCTAGC	1 cut(s)	749
BmuI	ACTGGG	2 cut(s)	66, 302
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu10I	CCTNAGC	2 cut(s)	786, 835
BpuEI	CTTGAG	1 cut(s)	849
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 532, 592
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	3 cut(s)	72, 308, 609
Bse21I	CCTNAGG	2 cut(s)	212, 591
Bse3DI	GCAATG	2 cut(s)	16, 1006
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	268, 582
BseLI	CCNNNNNNNGG	3 cut(s)	77, 532, 592
BseMI	GCAATG	2 cut(s)	16, 1006
BseMII	CTCAG	6 cut(s)	47, 53, 87, 226, 753, 777
BseNI	ACTGG	3 cut(s)	72, 308, 609
BseRI	GAGGAG	1 cut(s)	486
BseSI	GKGCMC	2 cut(s)	8, 403
BseXI	GCAGC	4 cut(s)	179, 214, 340, 745
BseYI	CCCAGC	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	3 cut(s)	210, 555, 941
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	2 cut(s)	289, 670
BslI	CCNNNNNNNGG	3 cut(s)	77, 532, 592
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	2 cut(s)	289, 670
BsnI	GGCC	3 cut(s)	210, 555, 941
Bsp1286I	GDGCHC	2 cut(s)	8, 403
Bsp1407I	TGTACA	1 cut(s)	825
Bsp143I	GATC	2 cut(s)	635, 965
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	3 cut(s)	210, 555, 941
BspCNI	CTCAG	6 cut(s)	48, 54, 88, 225, 754, 778
BspFNI	CGCG	1 cut(s)	455
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	2 cut(s)	240, 328
BspMI	ACCTGC	1 cut(s)	226
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	643, 973
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	16, 1006
BsrFI	RCCGGY	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	825
BsrI	ACTGG	3 cut(s)	72, 308, 609
BssAI	RCCGGY	1 cut(s)	749
BssMI	GATC	2 cut(s)	635, 965
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	10, 892
Bst6I	CTCTTC	2 cut(s)	303, 681
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	825
BstC8I	GCNNGC	8 cut(s)	28, 200, 351, 553, 736, 747, 751, 924
BstDEI	CTNAG	8 cut(s)	56, 62, 96, 212, 591, 762, 786, 835
BstENI	CCTNNNNNAGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	268, 582
BstFNI	CGCG	1 cut(s)	455
BstH2I	RGCGCY	2 cut(s)	173, 746
BstHHI	GCGC	3 cut(s)	172, 745, 906
BstKTI	GATC	2 cut(s)	638, 968
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	635, 965
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 199, 216, 659, 740, 755, 932
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	2 cut(s)	253, 960
BstSLI	GKGCMC	2 cut(s)	8, 403
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	179, 214, 340, 745
BstX2I	RGATCY	2 cut(s)	635, 965
BstYI	RGATCY	2 cut(s)	635, 965
Bsu36I	CCTNAGG	2 cut(s)	212, 591
BsuRI	GGCC	3 cut(s)	210, 555, 941
BtsCI	GGATG	2 cut(s)	268, 582
BtsIMutI	CAGTG	2 cut(s)	6, 888
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	8 cut(s)	28, 200, 351, 553, 736, 747, 751, 924
CaiI	CAGNNNCTG	1 cut(s)	659
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	3 cut(s)	172, 745, 906
Cfr10I	RCCGGY	1 cut(s)	749
CseI	GACGC	2 cut(s)	279, 461
Csp6I	GTAC	2 cut(s)	239, 826
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	5 cut(s)	378, 545, 735, 911, 943
CviQI	GTAC	2 cut(s)	239, 826
DdeI	CTNAG	8 cut(s)	56, 62, 96, 212, 591, 762, 786, 835
DpnI	GATC	2 cut(s)	637, 967
DpnII	GATC	2 cut(s)	635, 965
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	303, 681
EarI	CTCTTC	2 cut(s)	303, 681
Eco47III	AGCGCT	2 cut(s)	171, 744
Eco57I	CTGAAG	1 cut(s)	329
Eco81I	CCTNAGG	2 cut(s)	212, 591
EcoNI	CCTNNNNNAGG	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	5 cut(s)	381, 548, 738, 914, 946
FaqI	GGGAC	2 cut(s)	289, 670
FatI	CATG	5 cut(s)	377, 544, 734, 910, 942
FauNDI	CATATG	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	168, 228, 354, 759
FokI	GGATG	2 cut(s)	275, 569
Fsp4HI	GCNGC	4 cut(s)	168, 228, 354, 759
FspBI	CTAG	2 cut(s)	231, 746
GlaI	GCGC	3 cut(s)	171, 744, 905
GluI	GCNGC	4 cut(s)	168, 228, 354, 759
GsaI	CCCAGC	1 cut(s)	365
HaeII	RGCGCY	2 cut(s)	173, 746
HaeIII	GGCC	3 cut(s)	210, 555, 941
HapII	CCGG	1 cut(s)	750
HgaI	GACGC	2 cut(s)	279, 461
HhaI	GCGC	3 cut(s)	172, 745, 906
Hin1II	CATG	5 cut(s)	381, 548, 738, 914, 946
Hin6I	GCGC	3 cut(s)	170, 743, 904
HinP1I	GCGC	3 cut(s)	170, 743, 904
HindIII	AAGCTT	2 cut(s)	618, 832
HinfI	GANTC	3 cut(s)	445, 818, 860
HpaII	CCGG	1 cut(s)	750
Hpy166II	GTNNAC	2 cut(s)	401, 444
Hpy188I	TCNGA	4 cut(s)	97, 519, 872, 949
Hpy188III	TCNNGA	2 cut(s)	449, 911
Hpy8I	GTNNAC	2 cut(s)	401, 444
Hpy99I	CGWCG	2 cut(s)	295, 455
HpyAV	CCTTC	5 cut(s)	353, 596, 622, 626, 944
HpyCH4III	ACNGT	2 cut(s)	10, 892
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 199, 216, 659, 740, 755, 932
HpyF3I	CTNAG	8 cut(s)	56, 62, 96, 212, 591, 762, 786, 835
Hsp92II	CATG	5 cut(s)	381, 548, 738, 914, 946
HspAI	GCGC	3 cut(s)	170, 743, 904
KpnI	GGTACC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	749
KroNI	GCCGGC	1 cut(s)	751
Kzo9I	GATC	2 cut(s)	635, 965
Lsp1109I	GCAGC	4 cut(s)	179, 214, 340, 745
LweI	GCATC	3 cut(s)	3, 90, 591
MaeI	CTAG	2 cut(s)	231, 746
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	637, 967
MboI	GATC	2 cut(s)	635, 965
MboII	GAAGA	4 cut(s)	290, 637, 698, 862
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	635, 965
MhlI	GDGCHC	2 cut(s)	8, 403
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	4 cut(s)	489, 498, 564, 677
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	2 cut(s)	76, 126
MnlI	CCTC	8 cut(s)	91, 221, 359, 464, 682, 781, 931, 979
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	18
MroNI	GCCGGC	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	4 cut(s)	183, 563, 807, 884
MslI	CAYNNNNRTG	2 cut(s)	11, 21
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	814
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	7 cut(s)	27, 199, 216, 659, 740, 755, 932
NaeI	GCCGGC	1 cut(s)	751
NdeI	CATATG	1 cut(s)	86
NdeII	GATC	2 cut(s)	635, 965
NgoMIV	GCCGGC	1 cut(s)	749
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	5 cut(s)	381, 548, 738, 914, 946
NlaIV	GGNNCC	2 cut(s)	240, 328
NmuCI	GTSAC	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	1 cut(s)	738
PaeI	GCATGC	1 cut(s)	738
PagI	TCATGA	1 cut(s)	910
PdiI	GCCGGC	1 cut(s)	751
PfeI	GAWTC	2 cut(s)	818, 860
PkrI	GCNGC	4 cut(s)	169, 229, 355, 760
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	240, 328
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	2 cut(s)	635, 965
PvuII	CAGCTG	1 cut(s)	814
RsaI	GTAC	2 cut(s)	240, 827
RsaNI	GTAC	2 cut(s)	239, 826
RseI	CAYNNNNRTG	2 cut(s)	11, 21
SaqAI	TTAA	4 cut(s)	183, 563, 807, 884
SatI	GCNGC	4 cut(s)	168, 228, 354, 759
Sau3AI	GATC	2 cut(s)	635, 965
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	8, 403
SfaNI	GCATC	3 cut(s)	3, 90, 591
SfcI	CTRYAG	2 cut(s)	253, 960
SmiMI	CAYNNNNRTG	2 cut(s)	11, 21
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	4 cut(s)	489, 498, 564, 677
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	2 cut(s)	231, 746
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	10, 892
TaqI	TCGA	1 cut(s)	450
TasI	AATT	4 cut(s)	489, 498, 564, 677
TatI	WGTACW	1 cut(s)	825
TfiI	GAWTC	2 cut(s)	818, 860
Tru1I	TTAA	4 cut(s)	183, 563, 807, 884
Tru9I	TTAA	4 cut(s)	183, 563, 807, 884
TscAI	CASTG	2 cut(s)	13, 895
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	4 cut(s)	167, 227, 353, 758
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	81, 561, 810, 927
TspRI	CASTG	2 cut(s)	13, 895
VneI	GTGCAC	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	590
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	738
XspI	CTAG	2 cut(s)	231, 746
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.