Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Forward (+)

20728648 .. 20730646

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTACTGTGATGCCCGTTCACTACGCAGGCTCATCATGTAAACCCCGACTGAGTCTGAGGTTTCCCAGTTTTAGAGTCATATGTTCATCAGAGCTTAGCGTGTCGAGGCGACAAGTTTTGAAGCAAGTGGATGAGGAGTTGGGCAAGGGAGATGAGAGAGCAGCCCTCTCACTTGTTAAAGATTTGCAGGGCAAGCCCGGTGGCCTCAGATGCTTTGGTGCTGCTAGGCAGGTACCCCAAAGGCTTTACACCTTGGATGAGCTGAAGCTGAATAAAATAGAAGCGTCGTCTCTTTTATCCCCGGTGGATACTACTCTCGGTTCCATAGAAAGAAACCTGCAGATCGCTGCTGTGGTAGGAGGTGTTTCAGCATGGAATGTGTTCGGGTTTAGTCCGCAACAGATTTTCTATCTTTCTTTAGGGTTGTTGTTTCTGTGGACTCTGGACGCGATATCTTTCAATGGAGGACTTGGTAGCTTGGCTATTGATACAATTGGTCACACCTTTAGTCAGAAATACCGAAACAGGGTCACTCAACACGAAGCAGGCCATTTTCTAATTGCGTACTTGGTTGGCATCCTTCCAAAGGGATATACACTATCCAGTTTGGAGGCTTTGAAGAAGGAAGGATCTCTCAATGTTCAAGCAGGGACCGCTTTTGTGGATTTTGAGTTCGTCGAAGAGGTTAATGCAGGGAAAGTATCAGCCACTACGCTGAACAAATTTGCGTGCGTAGCGCTAGCTGGTGTTGCTTCCGAGTATCTCTTATATGGATACGCCGAGGGCGGGCTTGCTGATATCAACCAGTTGGATTCGTTGTTCCGAAGCTTAGGCTTCACGCAGAAGAAAACCGATTCCCAAGTGAGATGGTCTGTGCTGAACACCGTCCTAATTCTGCGCCGCCATGAAGGAGCACGAGCGAAACTTGCAGAGGCGATGGCAGAAGGAAAATCTGTAGGGGCTTGCATTGATGTCATAGAGGATACCATAGGCAATGCGGACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

36.36

Weight (kDa)

7.63

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	223, 348
Acc65I	GGTACC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	235
AccII	CGCG	1 cut(s)	452
AciI	CCGC	5 cut(s)	398, 657, 789, 904, 1001
AclWI	GGATC	1 cut(s)	640
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	3 cut(s)	7, 237, 569
AfeI	AGCGCT	1 cut(s)	741
AfiI	CCNNNNNNNGG	3 cut(s)	529, 589, 789
AgsI	TTSAA	4 cut(s)	124, 463, 622, 647
AloI	GAACNNNNNNTCC	4 cut(s)	659, 691, 806, 838
AluBI	AGCT	6 cut(s)	97, 265, 271, 480, 746, 831
AluI	AGCT	6 cut(s)	97, 265, 271, 480, 746, 831
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	640
Aor51HI	AGCGCT	1 cut(s)	741
AoxI	GGCC	2 cut(s)	205, 550
ApeKI	GCWGC	3 cut(s)	164, 224, 350
ApoI	RAATTY	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	383
Asp718I	GGTACC	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	742, 903
AspS9I	GGNCC	1 cut(s)	654
AsuC2I	CCSGG	2 cut(s)	201, 305
AsuNHI	GCTAGC	1 cut(s)	742
AvaII	GGWCC	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	3 cut(s)	176, 211, 337
BccI	CCATC	2 cut(s)	864, 934
BciVI	GTATCC	3 cut(s)	304, 770, 979
BcnI	CCSGG	2 cut(s)	201, 305
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	3 cut(s)	228, 743, 1009
BfmI	CTRYAG	2 cut(s)	341, 957
BfoI	RGCGCY	1 cut(s)	743
BfuAI	ACCTGC	2 cut(s)	223, 348
BfuI	GTATCC	3 cut(s)	304, 770, 979
BisI	GCNGC	4 cut(s)	165, 225, 351, 904
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	4 cut(s)	166, 226, 352, 905
Bme1390I	CCNGG	2 cut(s)	201, 305
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	3 cut(s)	237, 325, 655
BmrFI	CCNGG	2 cut(s)	201, 305
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	3, 203, 588
BmtI	GCTAGC	1 cut(s)	746
BmuI	ACTGGG	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bpu10I	CCTNAGC	1 cut(s)	832
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	201, 305
BsaJI	CCNNGG	3 cut(s)	255, 303, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 589, 789
Bse1I	ACTGG	3 cut(s)	69, 606, 808
Bse3DI	GCAATG	1 cut(s)	1003
BseDI	CCNNGG	3 cut(s)	255, 303, 783
BseGI	GGATG	3 cut(s)	139, 265, 579
BseLI	CCNNNNNNNGG	3 cut(s)	529, 589, 789
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	3 cut(s)	44, 50, 223
BseNI	ACTGG	3 cut(s)	69, 606, 808
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	176, 211, 337
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	207, 552
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	919
BsiSI	CCGG	2 cut(s)	201, 305
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	529, 589, 789
BsmAI	GTCTC	1 cut(s)	297
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	207, 552
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp143I	GATC	2 cut(s)	345, 632
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	5 cut(s)	398, 657, 789, 904, 1001
BspANI	GGCC	2 cut(s)	207, 552
BspCNI	CTCAG	3 cut(s)	45, 51, 222
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	237, 325, 655
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	2 cut(s)	223, 348
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	69, 606, 808
BssECI	CCNNGG	3 cut(s)	255, 303, 783
BssMI	GATC	2 cut(s)	345, 632
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	918
Bst4CI	ACNGT	2 cut(s)	10, 889
Bst6I	CTCTTC	1 cut(s)	678
BstC8I	GCNNGC	8 cut(s)	31, 197, 550, 733, 744, 791, 795, 967
BstDEI	CTNAG	5 cut(s)	53, 59, 98, 209, 832
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	3 cut(s)	139, 265, 579
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	1 cut(s)	743
BstHHI	GCGC	2 cut(s)	742, 903
BstKTI	GATC	2 cut(s)	348, 635
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	345, 632
BstMWI	GCNNNNNNNGC	6 cut(s)	196, 213, 656, 737, 752, 929
BstSCI	CCNGG	2 cut(s)	199, 303
BstSFI	CTRYAG	2 cut(s)	341, 957
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	3 cut(s)	176, 211, 337
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
BsuI	GTATCC	3 cut(s)	304, 770, 979
BsuRI	GGCC	2 cut(s)	207, 552
BtgZI	GCGATG	1 cut(s)	953
BtsCI	GGATG	3 cut(s)	139, 265, 579
BveI	ACCTGC	2 cut(s)	223, 348
Cac8I	GCNNGC	8 cut(s)	31, 197, 550, 733, 744, 791, 795, 967
CfoI	GCGC	2 cut(s)	742, 903
Cfr13I	GGNCC	1 cut(s)	654
CseI	GACGC	2 cut(s)	276, 458
Csp6I	GTAC	3 cut(s)	6, 236, 568
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	3 cut(s)	39, 375, 908
CviQI	GTAC	3 cut(s)	6, 236, 568
DdeI	CTNAG	5 cut(s)	53, 59, 98, 209, 832
DpnI	GATC	2 cut(s)	347, 634
DpnII	GATC	2 cut(s)	345, 632
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	255
Eco32I	GATATC	2 cut(s)	456, 802
Eco47I	GGWCC	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRV	GATATC	2 cut(s)	456, 802
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	3 cut(s)	42, 378, 911
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	3 cut(s)	38, 374, 907
FauI	CCCGC	1 cut(s)	782
FauNDI	CATATG	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	165, 225, 351, 904
FokI	GGATG	3 cut(s)	146, 272, 566
Fsp4HI	GCNGC	4 cut(s)	165, 225, 351, 904
FspBI	CTAG	3 cut(s)	228, 743, 1009
GlaI	GCGC	2 cut(s)	741, 902
GluI	GCNGC	4 cut(s)	165, 225, 351, 904
HaeII	RGCGCY	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	207, 552
HapII	CCGG	2 cut(s)	201, 305
HgaI	GACGC	2 cut(s)	276, 458
HhaI	GCGC	2 cut(s)	742, 903
Hin1II	CATG	3 cut(s)	42, 378, 911
Hin6I	GCGC	2 cut(s)	740, 901
HinP1I	GCGC	2 cut(s)	740, 901
HindIII	AAGCTT	1 cut(s)	829
HinfI	GANTC	5 cut(s)	55, 78, 442, 815, 857
HpaII	CCGG	2 cut(s)	201, 305
Hpy166II	GTNNAC	3 cut(s)	22, 44, 441
Hpy188I	TCNGA	6 cut(s)	60, 94, 212, 516, 760, 827
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	3 cut(s)	22, 44, 441
Hpy99I	CGWCG	2 cut(s)	292, 683
HpyAV	CCTTC	5 cut(s)	593, 619, 623, 905, 941
HpyCH4III	ACNGT	2 cut(s)	10, 889
HpyCH4V	TGCA	5 cut(s)	190, 343, 695, 932, 969
HpyF10VI	GCNNNNNNNGC	6 cut(s)	196, 213, 656, 737, 752, 929
HpyF3I	CTNAG	5 cut(s)	53, 59, 98, 209, 832
Hsp92II	CATG	3 cut(s)	42, 378, 911
HspAI	GCGC	2 cut(s)	740, 901
KpnI	GGTACC	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	345, 632
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	3 cut(s)	176, 211, 337
LweI	GCATC	3 cut(s)	3, 203, 588
MaeI	CTAG	3 cut(s)	228, 743, 1009
MaeIII	GTNAC	2 cut(s)	500, 532
MalI	GATC	2 cut(s)	347, 634
MboI	GATC	2 cut(s)	345, 632
MboII	GAAGA	3 cut(s)	634, 695, 859
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	919
MluCI	AATT	4 cut(s)	495, 561, 725, 894
MlyI	GAGTC	3 cut(s)	64, 87, 436
MmeI	TCCRAC	1 cut(s)	792
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	2 cut(s)	180, 690
MspI	CCGG	2 cut(s)	201, 305
MspR9I	CCNGG	2 cut(s)	201, 305
MunI	CAATTG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	6 cut(s)	196, 213, 656, 737, 752, 929
NciI	CCSGG	2 cut(s)	201, 305
NdeI	CATATG	1 cut(s)	83
NdeII	GATC	2 cut(s)	345, 632
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	3 cut(s)	42, 378, 911
NlaIV	GGNNCC	3 cut(s)	237, 325, 655
NmeAIII	GCCGAG	1 cut(s)	808
NmuCI	GTSAC	2 cut(s)	500, 532
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	815, 857
PflFI	GACNNNGTC	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	166, 226, 352, 905
PleI	GAGTC	3 cut(s)	63, 86, 436
PpsI	GAGTC	3 cut(s)	63, 86, 436
PspN4I	GGNNCC	3 cut(s)	237, 325, 655
PspPI	GGNCC	1 cut(s)	654
PstI	CTGCAG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	632
PsyI	GACNNNGTC	1 cut(s)	54
RsaI	GTAC	3 cut(s)	7, 237, 569
RsaNI	GTAC	3 cut(s)	6, 236, 568
SaqAI	TTAA	2 cut(s)	180, 690
SatI	GCNGC	4 cut(s)	165, 225, 351, 904
Sau3AI	GATC	2 cut(s)	345, 632
Sau96I	GGNCC	1 cut(s)	654
SchI	GAGTC	3 cut(s)	64, 87, 436
ScrFI	CCNGG	2 cut(s)	201, 305
SduI	GDGCHC	1 cut(s)	919
SfaNI	GCATC	3 cut(s)	3, 203, 588
SfcI	CTRYAG	2 cut(s)	341, 957
SinI	GGWCC	1 cut(s)	654
Sse9I	AATT	4 cut(s)	495, 561, 725, 894
SsiI	CCGC	5 cut(s)	398, 657, 789, 904, 1001
SspMI	CTAG	3 cut(s)	228, 743, 1009
StyD4I	CCNGG	2 cut(s)	199, 303
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	10, 889
TaqI	TCGA	2 cut(s)	107, 681
TasI	AATT	4 cut(s)	495, 561, 725, 894
TauI	GCSGC	1 cut(s)	906
TfiI	GAWTC	2 cut(s)	815, 857
Tru1I	TTAA	2 cut(s)	180, 690
Tru9I	TTAA	2 cut(s)	180, 690
TseFI	GTSAC	2 cut(s)	500, 532
TseI	GCWGC	3 cut(s)	164, 224, 350
Tsp45I	GTSAC	2 cut(s)	500, 532
TspDTI	ATGAA	2 cut(s)	78, 924
Tth111I	GACNNNGTC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	654
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	3 cut(s)	228, 743, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.