Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000510.1

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Reverse (-)

17112 .. 19280

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000510.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgcattgcctatcatataaaccccaagtgagatttccgacttttggaatcacactatgctcatcttctgaggttagtgtgtcaaggcagcaagttttgaagcaagtggataaggagttggctaaaggagatgagagggcagctctttcacttgttaaagatttgcagggcaagccaggtggcctcagatgctttggtgctgctaggcaggtgcctcaaaggctttacactttggatgagctgaagctgaatggaatagtagcacagtctcttctgtcaccagtggatgctactcttggttccatagaaagaaatcttcagattgctgctgtggttggaggtgtttctgcatggaatgttttcgggtttagtcctcagcagcttttctatgcttctttagcagcattgtttctgtggactctggacgcgatatctttcaatggaggagttagtagcttggctattgatacaattggtcacacctttagtcagaagtaccacaatagggtcattcaacatgaagctggccatttcttgattgcgtacttgcttggtattcttcccaagggatatacactaactagtttggatgcattcaagaaggaagggtctctcaatgttcaagcagggaccgcttttgtggatgttgagtttgttgaggaggttaaagcaggcaaagtatcagcaagtacgctgaacagatttgcgtgcatagcgctcgccggtgttgttgctgagtatcttttatacggttatgctgagggtggtctagctgatataaaccagttggattcactgcttagaagcctaggcttcacacaaaagaaatctgattcacaagtcagatggtctgtactaaacactgtcttaatcatgcgccgccatgaagcagcacgagctaaactcgcagaggcgatggcagaaggaaaatccgtgggatcctgcatcgacattatagagaataccataggcgatgcagacgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

35.42

Weight (kDa)

7.0

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	199
AatII	GACGTC	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	211
AccII	CGCG	1 cut(s)	428
AciI	CCGC	2 cut(s)	633, 880
AclWI	GGATC	2 cut(s)	933, 946
AcoI	YGGCCR	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	263, 302
AcyI	GRCGYC	1 cut(s)	981
AfaI	GTAC	4 cut(s)	497, 545, 691, 855
AfeI	AGCGCT	1 cut(s)	717
AfiI	CCNNNNNNNGG	2 cut(s)	44, 505
AgsI	TTSAA	5 cut(s)	100, 439, 515, 598, 623
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	8 cut(s)	143, 241, 247, 382, 456, 524, 773, 899
AluI	AGCT	8 cut(s)	143, 241, 247, 382, 456, 524, 773, 899
Alw26I	GTCTC	2 cut(s)	273, 615
AlwI	GGATC	2 cut(s)	933, 946
Aor51HI	AGCGCT	1 cut(s)	717
AoxI	GGCC	2 cut(s)	181, 526
ApeKI	GCWGC	7 cut(s)	88, 140, 200, 326, 379, 401, 890
Asp700I	GAANNNNTTC	1 cut(s)	359
AspA2I	CCTAGG	1 cut(s)	808
AspLEI	GCGC	2 cut(s)	718, 879
AspS9I	GGNCC	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	630
AvrII	CCTAGG	1 cut(s)	808
BalI	TGGCCA	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	938
BanI	GGYRCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	894
BbvCI	CCTCAGC	2 cut(s)	375, 759
BbvI	GCAGC	7 cut(s)	100, 152, 187, 313, 391, 413, 902
BccI	CCATC	2 cut(s)	840, 910
BcgI	CGANNNNNNTGC	2 cut(s)	700, 734
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	273, 615
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	5 cut(s)	204, 582, 770, 809, 985
BfoI	RGCGCY	1 cut(s)	719
BfuAI	ACCTGC	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	220
BisI	GCNGC	8 cut(s)	89, 141, 201, 327, 380, 402, 880, 891
BlnI	CCTAGG	1 cut(s)	808
BlsI	GCNGC	8 cut(s)	90, 142, 202, 328, 381, 403, 881, 892
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	630
BmiI	GGNNCC	4 cut(s)	213, 301, 631, 940
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	5 cut(s)	179, 277, 580, 954, 964
BplI	GAGNNNNNCTC	4 cut(s)	127, 159, 888, 920
Bpu10I	CCTNAGC	2 cut(s)	375, 759
BsaHI	GRCGYC	1 cut(s)	981
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	564, 808, 933
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 505
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	2 cut(s)	281, 784
Bse3DI	GCAATG	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	564, 808, 933
BseGI	GGATG	4 cut(s)	241, 292, 595, 649
BseLI	CCNNNNNNNGG	2 cut(s)	44, 505
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	5 cut(s)	60, 199, 389, 726, 750
BseNI	ACTGG	2 cut(s)	281, 784
BseRI	GAGGAG	2 cut(s)	459, 674
BseXI	GCAGC	7 cut(s)	100, 152, 187, 313, 391, 413, 902
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	183, 528
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	2 cut(s)	44, 505
BsmAI	GTCTC	2 cut(s)	273, 615
BsmFI	GGGAC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	183, 528
Bso31I	GGTCTC	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	938
BspACI	CCGC	2 cut(s)	633, 880
BspANI	GGCC	2 cut(s)	183, 528
BspCNI	CTCAG	5 cut(s)	61, 198, 388, 727, 751
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	4 cut(s)	213, 301, 631, 940
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	933, 946
BspT107I	GGYRCC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	2 cut(s)	281, 784
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	564, 808, 933
BssMI	GATC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	981
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	2 cut(s)	564, 808
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	267, 752, 865
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	981
BstC8I	GCNNGC	5 cut(s)	173, 526, 673, 709, 720
BstDEI	CTNAG	6 cut(s)	69, 185, 375, 735, 759, 800
BstDSI	CCRYGG	1 cut(s)	933
BstF5I	GGATG	4 cut(s)	241, 292, 595, 649
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	719
BstHHI	GCGC	2 cut(s)	718, 879
BstKTI	GATC	1 cut(s)	941
BstMAI	GTCTC	2 cut(s)	273, 615
BstMBI	GATC	1 cut(s)	938
BstMWI	GCNNNNNNNGC	8 cut(s)	172, 189, 220, 398, 632, 713, 896, 905
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	7 cut(s)	100, 152, 187, 313, 391, 413, 902
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	183, 528
BtgI	CCRYGG	1 cut(s)	933
BtgZI	GCGATG	1 cut(s)	929
BtsCI	GGATG	4 cut(s)	241, 292, 595, 649
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	3 cut(s)	288, 794, 861
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	5 cut(s)	173, 526, 673, 709, 720
CfoI	GCGC	2 cut(s)	718, 879
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	630
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	4 cut(s)	496, 544, 690, 854
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	4 cut(s)	351, 518, 874, 884
CviQI	GTAC	4 cut(s)	496, 544, 690, 854
DdeI	CTNAG	6 cut(s)	69, 185, 375, 735, 759, 800
DpnI	GATC	1 cut(s)	940
DpnII	GATC	1 cut(s)	938
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	564, 808
Eco31I	GGTCTC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	630
Eco47III	AGCGCT	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	263, 302
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	564, 808
EcoT22I	ATGCAT	2 cut(s)	6, 595
ErhI	CCWWGG	2 cut(s)	564, 808
FaeI	CATG	4 cut(s)	354, 521, 877, 887
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	4 cut(s)	350, 517, 873, 883
Fnu4HI	GCNGC	8 cut(s)	89, 141, 201, 327, 380, 402, 880, 891
FokI	GGATG	4 cut(s)	248, 299, 602, 656
Fsp4HI	GCNGC	8 cut(s)	89, 141, 201, 327, 380, 402, 880, 891
FspBI	CTAG	5 cut(s)	204, 582, 770, 809, 985
GlaI	GCGC	2 cut(s)	717, 878
GluI	GCNGC	8 cut(s)	89, 141, 201, 327, 380, 402, 880, 891
HaeII	RGCGCY	1 cut(s)	719
HaeIII	GGCC	2 cut(s)	183, 528
HapII	CCGG	1 cut(s)	723
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	2 cut(s)	718, 879
Hin1I	GRCGYC	1 cut(s)	981
Hin1II	CATG	4 cut(s)	354, 521, 877, 887
Hin6I	GCGC	2 cut(s)	716, 877
HinP1I	GCGC	2 cut(s)	716, 877
HinfI	GANTC	4 cut(s)	48, 418, 791, 833
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	7 cut(s)	39, 70, 188, 321, 492, 832, 845
Hpy188III	TCNNGA	3 cut(s)	422, 535, 598
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	3 cut(s)	595, 599, 917
HpyCH4III	ACNGT	3 cut(s)	267, 752, 865
HpyCH4IV	ACGT	1 cut(s)	981
HpyCH4V	TGCA	7 cut(s)	4, 166, 350, 593, 711, 945, 977
HpyF10VI	GCNNNNNNNGC	8 cut(s)	172, 189, 220, 398, 632, 713, 896, 905
HpyF3I	CTNAG	6 cut(s)	69, 185, 375, 735, 759, 800
HpySE526I	ACGT	1 cut(s)	981
Hsp92I	GRCGYC	1 cut(s)	981
Hsp92II	CATG	4 cut(s)	354, 521, 877, 887
HspAI	GCGC	2 cut(s)	716, 877
Kzo9I	GATC	1 cut(s)	938
Lsp1109I	GCAGC	7 cut(s)	100, 152, 187, 313, 391, 413, 902
LweI	GCATC	5 cut(s)	179, 277, 580, 954, 964
MaeI	CTAG	5 cut(s)	204, 582, 770, 809, 985
MaeII	ACGT	1 cut(s)	981
MaeIII	GTNAC	2 cut(s)	276, 476
MalI	GATC	1 cut(s)	940
MboI	GATC	1 cut(s)	938
MboII	GAAGA	4 cut(s)	57, 263, 308, 551
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	938
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	3 cut(s)	62, 316, 768
Mox20I	TGGCCA	1 cut(s)	528
Mph1103I	ATGCAT	2 cut(s)	6, 595
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	3 cut(s)	156, 666, 869
Msp20I	TGGCCA	1 cut(s)	528
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	8 cut(s)	172, 189, 220, 398, 632, 713, 896, 905
NdeII	GATC	1 cut(s)	938
NlaIII	CATG	4 cut(s)	354, 521, 877, 887
NlaIV	GGNNCC	4 cut(s)	213, 301, 631, 940
NmuCI	GTSAC	2 cut(s)	276, 476
NsiI	ATGCAT	2 cut(s)	6, 595
PaqCI	CACCTGC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	48, 791, 833
PkrI	GCNGC	8 cut(s)	90, 142, 202, 328, 381, 403, 881, 892
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	4 cut(s)	213, 301, 631, 940
PspPI	GGNCC	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	938
RsaI	GTAC	4 cut(s)	497, 545, 691, 855
RsaNI	GTAC	4 cut(s)	496, 544, 690, 854
SaqAI	TTAA	3 cut(s)	156, 666, 869
SatI	GCNGC	8 cut(s)	89, 141, 201, 327, 380, 402, 880, 891
Sau3AI	GATC	1 cut(s)	938
Sau96I	GGNCC	1 cut(s)	630
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	177
SfaNI	GCATC	5 cut(s)	179, 277, 580, 954, 964
SgrAI	CRCCGGYG	1 cut(s)	722
SinI	GGWCC	1 cut(s)	630
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	2 cut(s)	633, 880
SspMI	CTAG	5 cut(s)	204, 582, 770, 809, 985
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	2 cut(s)	564, 808
TaaI	ACNGT	3 cut(s)	267, 752, 865
TaiI	ACGT	1 cut(s)	984
TaqI	TCGA	1 cut(s)	948
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	3 cut(s)	48, 791, 833
Tru1I	TTAA	3 cut(s)	156, 666, 869
Tru9I	TTAA	3 cut(s)	156, 666, 869
TscAI	CASTG	3 cut(s)	288, 801, 868
TseFI	GTSAC	2 cut(s)	276, 476
TseI	GCWGC	7 cut(s)	88, 140, 200, 326, 379, 401, 890
Tsp45I	GTSAC	2 cut(s)	276, 476
TspDTI	ATGAA	2 cut(s)	534, 900
TspGWI	ACGGA	1 cut(s)	922
TspRI	CASTG	3 cut(s)	288, 801, 868
VpaK11BI	GGWCC	1 cut(s)	630
XmaJI	CCTAGG	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	5 cut(s)	204, 582, 770, 809, 985
ZraI	GACGTC	1 cut(s)	982
Zsp2I	ATGCAT	2 cut(s)	6, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.