Rorug02G0648900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006659
Physical Location & Seq
Forward (+)
75811732 .. 75815098
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0648900.1

Sequence Viewer

Length: 1155 bp
ATGGCTCTTAAGGCTGTCCATGTCTCCGACGTCCCTAACCTCGATCAGGTCCCGGAAAATGCCTCTCTTCAGCTTTACTCCACCCGCTTCTCCAAAGGTGTGGAATTTGGTCGGGTGGCATCGAGAATACCTAAGTTTCTAGTGATCGGACACAGAGGGAATGGAATGAACGCTTTACAGTCGTCTGATCGGAGAATGAGAGCCATTAAGGAAAACTCCATCATGTCGTTCAACACTGCTGCCAAATACCCTCTTGATTTTGTCGAATTTGACGTTCAGGTAACCAAAGATGGCTGCCCTGTCATTTTCCACGACGACTTCATCCTCACCGAAGATCAGGGTACTGTGTTTGAGAAGAGAATACCTGAATTATGTTTGACGGAGTTCCTAAATTATGGTCCACAAAGAGAGGCAGGAAAGGATGGAAAGACTTTGTTAAGGAAAAACAAAGACGGTCAAATTGTAAGATGGGAGGTTGAAAAAGATGATTCCCTCTGTACCCTCCAAGAAGTTTTTGAGAAGGTCGAACCTTCTGTTGGCTTCAACATTGAGATCAAATTCGACGACTACATTGTTTACCAGGAGGACTATCTCGTCCGTGTCCTTCAATCCATCTTGAAAGTTGTGTTTGAGTACGCCAAAGATAGGCCTATTGTATTCTCGTCATTCCAACCAGATGCAGCGGTCCTTGTTAAGAAGCTGCAGAACACCTACCCTGTCTTTTTCTTGACAAATGGTGGGAATGAGATTTACTGTGATGTGAGAAGGAATTCTTTGGATGAAGCAATAAAGGTGTGCTTAGAGGGTGGTTTGGAAGGTATTGTATCGGAGGTGAAAGGTGTTTTCCGAAATCCTGGGGCGGTAACCAAGATCAAGGAGTCCAAGCTCTCACTTCTAACCTATGGCAAACTAAATAATGTTGCCGAAGCAGTGTACATGCAACACCTAATGGGAATTGAGGGAGTGATTGTGGATTTTGTGCAAGAGATCACAGAAGCAGTGTGTGATATGATAAAGCCATCGGCGGCCACGGAAGGAGACGGGGATGATTTGTTGGAAGGGGACGGGAAGATGCAATTGAAATCAAAGCCGGAGTTCTCGCAGAGGGAGCTTTCCTTTCTGTTGAAGCTCATTCCAGAATTGATACAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

43.25

Weight (kDa)

5.07

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 51 - 328 3.7e-46 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
AatII GACGTC 1 cut(s) 33
AciI CCGC 4 cut(s) 85, 683, 860, 1025
AcoI YGGCCR 1 cut(s) 1026
AcsI RAATTY 4 cut(s) 104, 266, 557, 769
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 4 cut(s) 343, 499, 635, 935
AfiI CCNNNNNNNGG 3 cut(s) 46, 536, 645
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 7 cut(s) 232, 479, 544, 608, 619, 1081, 1126
AjnI CCWGG 2 cut(s) 579, 853
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 5 cut(s) 73, 700, 886, 1111, 1129
AluI AGCT 5 cut(s) 73, 700, 886, 1111, 1129
Alw26I GTCTC 2 cut(s) 28, 1032
AoxI GGCC 2 cut(s) 647, 1026
ApeKI GCWGC 4 cut(s) 239, 294, 680, 700
ApoI RAATTY 4 cut(s) 104, 266, 557, 769
Asp700I GAANNNNTTC 1 cut(s) 769
AspS9I GGNCC 3 cut(s) 49, 398, 685
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 319, 844
AvaII GGWCC 3 cut(s) 49, 398, 685
BbvI GCAGC 4 cut(s) 226, 281, 687, 692
BccI CCATC 6 cut(s) 227, 284, 416, 462, 620, 1027
BciT130I CCWGG 2 cut(s) 581, 855
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 28, 1032
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 701
BfrI CTTAAG 1 cut(s) 8
BisI GCNGC 5 cut(s) 240, 295, 681, 701, 1026
BlsI GCNGC 5 cut(s) 241, 296, 682, 702, 1027
Bme1390I CCNGG 3 cut(s) 53, 581, 855
Bme18I GGWCC 3 cut(s) 49, 398, 685
BmgT120I GGNCC 3 cut(s) 49, 398, 685
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 3 cut(s) 53, 581, 855
BmsI GCATC 3 cut(s) 128, 667, 1062
BpuMI CCSGG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 854, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 536, 645
BseBI CCWGG 2 cut(s) 581, 855
BseDI CCNNGG 2 cut(s) 854, 1029
BseGI GGATG 4 cut(s) 321, 427, 784, 1051
BseLI CCNNNNNNNGG 3 cut(s) 46, 536, 645
BseXI GCAGC 4 cut(s) 226, 281, 687, 692
BshFI GGCC 2 cut(s) 649, 1028
BsiSI CCGG 2 cut(s) 53, 1091
BslFI GGGAC 3 cut(s) 17, 35, 1076
BslI CCNNNNNNNGG 3 cut(s) 46, 536, 645
BsmAI GTCTC 2 cut(s) 28, 1032
BsmBI CGTCTC 1 cut(s) 1032
BsmFI GGGAC 3 cut(s) 17, 35, 1076
BsnI GGCC 2 cut(s) 649, 1028
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
BspACI CCGC 4 cut(s) 85, 683, 860, 1025
BspANI GGCC 2 cut(s) 649, 1028
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 705
BspTI CTTAAG 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 933
BssECI CCNNGG 2 cut(s) 854, 1029
BssMI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 581, 855
Bst4CI ACNGT 4 cut(s) 180, 346, 455, 755
Bst6I CTCTTC 2 cut(s) 72, 350
BstACI GRCGYC 1 cut(s) 30
BstAFI CTTAAG 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 933
BstDEI CTNAG 2 cut(s) 132, 799
BstDSI CCRYGG 1 cut(s) 1029
BstEII GGTNACC 2 cut(s) 280, 862
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 4 cut(s) 321, 427, 784, 1051
BstKTI GATC 7 cut(s) 46, 147, 190, 337, 555, 873, 990
BstMAI GTCTC 2 cut(s) 28, 1032
BstMBI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1108
BstNI CCWGG 2 cut(s) 581, 855
BstNSI RCATGY 1 cut(s) 940
BstPI GGTNACC 2 cut(s) 280, 862
BstSCI CCNGG 3 cut(s) 51, 579, 853
BstSFI CTRYAG 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 226, 281, 687, 692
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 649, 1028
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 4 cut(s) 321, 427, 784, 1051
BtsI GCAGTG 3 cut(s) 234, 936, 1005
BtsIMutI CAGTG 3 cut(s) 234, 936, 1005
Cfr13I GGNCC 3 cut(s) 49, 398, 685
Csp6I GTAC 4 cut(s) 342, 498, 634, 934
CviAII CATG 3 cut(s) 20, 223, 937
CviQI GTAC 4 cut(s) 342, 498, 634, 934
DdeI CTNAG 2 cut(s) 132, 799
DpnI GATC 7 cut(s) 45, 146, 189, 336, 554, 872, 989
DpnII GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 1026
Eam1104I CTCTTC 2 cut(s) 72, 350
EarI CTCTTC 2 cut(s) 72, 350
Eco147I AGGCCT 1 cut(s) 649
Eco47I GGWCC 3 cut(s) 49, 398, 685
Eco57I CTGAAG 1 cut(s) 53
Eco91I GGTNACC 2 cut(s) 280, 862
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 2 cut(s) 280, 862
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 579, 853
Esp3I CGTCTC 1 cut(s) 1032
FaeI CATG 3 cut(s) 23, 226, 940
FaiI YATR 7 cut(s) 21, 224, 373, 396, 903, 938, 1010
FalI AAGNNNNNCTT 4 cut(s) 757, 789, 782, 814
FaqI GGGAC 3 cut(s) 17, 35, 1076
FatI CATG 3 cut(s) 19, 222, 936
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 5 cut(s) 240, 295, 681, 701, 1026
FokI GGATG 4 cut(s) 308, 434, 791, 1058
Fsp4HI GCNGC 5 cut(s) 240, 295, 681, 701, 1026
FspBI CTAG 1 cut(s) 140
GluI GCNGC 5 cut(s) 240, 295, 681, 701, 1026
HaeIII GGCC 2 cut(s) 649, 1028
HapII CCGG 2 cut(s) 53, 1091
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 23, 226, 940
HinfI GANTC 2 cut(s) 488, 878
HpaII CCGG 2 cut(s) 53, 1091
HphI GGTGA 2 cut(s) 319, 844
Hpy166II GTNNAC 3 cut(s) 401, 577, 934
Hpy188I TCNGA 7 cut(s) 28, 149, 187, 192, 829, 848, 1154
Hpy188III TCNNGA 5 cut(s) 123, 254, 616, 727, 1136
Hpy8I GTNNAC 3 cut(s) 401, 577, 934
Hpy99I CGWCG 3 cut(s) 32, 317, 566
HpyAV CCTTC 7 cut(s) 514, 540, 614, 759, 809, 1028, 1052
HpyCH4III ACNGT 4 cut(s) 180, 346, 455, 755
HpyCH4IV ACGT 2 cut(s) 30, 273
HpyCH4V TGCA 5 cut(s) 680, 703, 940, 982, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1108
HpyF3I CTNAG 2 cut(s) 132, 799
HpySE526I ACGT 2 cut(s) 30, 273
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 23, 226, 940
Kzo9I GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 4 cut(s) 226, 281, 687, 692
LweI GCATC 3 cut(s) 128, 667, 1062
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 30, 273
MaeIII GTNAC 2 cut(s) 280, 862
MalI GATC 7 cut(s) 45, 146, 189, 336, 554, 872, 989
MboI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
MboII GAAGA 4 cut(s) 59, 344, 367, 1081
MfeI CAATTG 1 cut(s) 1076
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 3 cut(s) 51, 694, 1035
MroXI GAANNNNTTC 1 cut(s) 769
MseI TTAA 4 cut(s) 9, 207, 437, 693
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 53, 1091
MspR9I CCNGG 3 cut(s) 53, 581, 855
MunI CAATTG 1 cut(s) 1076
MvaI CCWGG 2 cut(s) 581, 855
MwoI GCNNNNNNNGC 2 cut(s) 11, 1108
NciI CCSGG 1 cut(s) 53
NdeII GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
NlaIII CATG 3 cut(s) 23, 226, 940
NlaIV GGNNCC 1 cut(s) 51
NspI RCATGY 1 cut(s) 940
PceI AGGCCT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 5 cut(s) 241, 296, 682, 702, 1027
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 579, 853
PspEI GGTNACC 2 cut(s) 280, 862
PspGI CCWGG 2 cut(s) 579, 853
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 3 cut(s) 49, 398, 685
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 705
RsaI GTAC 4 cut(s) 343, 499, 635, 935
RsaNI GTAC 4 cut(s) 342, 498, 634, 934
SaqAI TTAA 4 cut(s) 9, 207, 437, 693
SatI GCNGC 5 cut(s) 240, 295, 681, 701, 1026
Sau3AI GATC 7 cut(s) 43, 144, 187, 334, 552, 870, 987
Sau96I GGNCC 3 cut(s) 49, 398, 685
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 3 cut(s) 53, 581, 855
SfaNI GCATC 3 cut(s) 128, 667, 1062
SfcI CTRYAG 1 cut(s) 701
SinI GGWCC 3 cut(s) 49, 398, 685
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 4 cut(s) 85, 683, 860, 1025
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 3 cut(s) 51, 579, 853
TaaI ACNGT 4 cut(s) 180, 346, 455, 755
TaiI ACGT 2 cut(s) 33, 276
TaqI TCGA 5 cut(s) 42, 122, 264, 525, 561
TatI WGTACW 1 cut(s) 933
TauI GCSGC 1 cut(s) 1028
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 4 cut(s) 9, 207, 437, 693
Tru9I TTAA 4 cut(s) 9, 207, 437, 693
TscAI CASTG 3 cut(s) 241, 936, 1005
TseI GCWGC 4 cut(s) 239, 294, 680, 700
TspDTI ATGAA 3 cut(s) 182, 310, 795
TspGWI ACGGA 3 cut(s) 395, 587, 1046
TspRI CASTG 3 cut(s) 241, 936, 1005
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 3 cut(s) 49, 398, 685
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 4 cut(s) 104, 266, 557, 769
XceI RCATGY 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 769
XspI CTAG 1 cut(s) 140
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.