Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Forward (+)

46363490 .. 46365790

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGGGTCTGGCGATGCGTTGTGAATTTTGTTTGGATGGGCACTCTCATGCATTGCTCATCATATAAACCCCAACTGAGATTTCCCACTTTTGGAATCACACTATGCTCATCTTCTGAGGTTAGTGTGTCAAGGCAGCAAGTTTTGAAGCAAGTGGATAAGGAGTTGGCTAAAGGAGATGAGAGGGCAGCTCTTTCACTTGTTAAAGATTTGCAGGGCAAGCCTGGTGGGCTCAGATGCTTTGGTGCTGCTAGGCAGGTGCCTCAAAGGCTTTACACTTTGGATGAGCTGAAGCTGAATGGAATAGCAACACAGTCTCTTCTGTCACCAGTGGACGCTACTCTTGGTTCCATAGAAAGAAATCTTCAGATTGCTGCTGTGGTTGGAGGTGTTTCTGCATGGAATGTTTTCGGGTTTAGTCCTCAGCAGCTTTTCTATGTTTCTTTAGCAGCATTGTTTCTGTGGACTCTGGACGCGATATCTTTCAATGGAGGAGTTAGTAGCTTGGCTATTGATACAATTGGTCACACCTTTAGTCAGAAGTACCACAATAGGGTCATTCAACATGAAGCTGGCCATTTCTTGATTGCGTACTTTCTTGGTATTCTTCCCAAGGGATATACACTAACTAGTTTGGATGCGTTCAAGAAGGAAGGGTCTCTCAATGTTCAAGCAGGGACTGCATTTGTGGATGTTGAGTTTGTGGAGGAGGTTAATGCAGGCAAAGTATCAGCAAGTACGCTGAACAGATTTGCGTGCGTAGCGCTCGCGGGTGTTGTTGCTGAGTATCTTTTATATGGTTATGCTGAGGGTGGTCTAGCTGATATAAACCAGTTGGATTCACTGCTTAGAAGCCTAGGCTTCACGCAAAAGAAATCCGATTCACAAGTCAGATGGTCTGTACTAAACACTGTCTTAATCATGCGCCGCCATGAAGCAGCACGATCTAAACTCGCAGAGGCGATGGCAGAAGGAAAATCCGTGGGATCCTGCATCGACATTATAGAGAATACCATAGGCGATGCAGACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

37.45

Weight (kDa)

7.62

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	259
AccII	CGCG	2 cut(s)	476, 770
AciI	CCGC	2 cut(s)	770, 928
AclWI	GGATC	2 cut(s)	981, 994
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	2 cut(s)	311, 350
AfaI	GTAC	4 cut(s)	545, 593, 739, 903
AfeI	AGCGCT	1 cut(s)	765
AfiI	CCNNNNNNNGG	2 cut(s)	92, 553
AgsI	TTSAA	5 cut(s)	148, 487, 563, 646, 671
AhlI	ACTAGT	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	7 cut(s)	191, 289, 295, 430, 504, 572, 821
AluI	AGCT	7 cut(s)	191, 289, 295, 430, 504, 572, 821
Alw26I	GTCTC	2 cut(s)	321, 663
AlwI	GGATC	2 cut(s)	981, 994
AlwNI	CAGNNNCTG	1 cut(s)	680
Aor51HI	AGCGCT	1 cut(s)	765
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	7 cut(s)	136, 188, 248, 374, 427, 449, 938
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	407
AspA2I	CCTAGG	1 cut(s)	856
AspLEI	GCGC	2 cut(s)	766, 927
AsuHPI	GGTGA	1 cut(s)	318
AvrII	CCTAGG	1 cut(s)	856
BaeGI	GKGCMC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	986
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	234
BbvCI	CCTCAGC	2 cut(s)	423, 807
BbvI	GCAGC	7 cut(s)	148, 200, 235, 361, 439, 461, 950
BccI	CCATC	3 cut(s)	31, 888, 958
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	321, 663
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	5 cut(s)	252, 630, 818, 857, 1033
BfoI	RGCGCY	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	247
BglI	GCCNNNNNGGC	2 cut(s)	229, 268
BisI	GCNGC	8 cut(s)	137, 189, 249, 375, 428, 450, 928, 939
BlnI	CCTAGG	1 cut(s)	856
BlsI	GCNGC	8 cut(s)	138, 190, 250, 376, 429, 451, 929, 940
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	261, 349, 988
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	5 cut(s)	5, 227, 628, 1002, 1012
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu10I	CCTNAGC	2 cut(s)	423, 807
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	3 cut(s)	612, 856, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 553
Bse1I	ACTGG	2 cut(s)	329, 832
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	612, 856, 981
BseGI	GGATG	4 cut(s)	42, 289, 643, 697
BseLI	CCNNNNNNNGG	2 cut(s)	92, 553
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	6 cut(s)	68, 108, 247, 437, 774, 798
BseNI	ACTGG	2 cut(s)	329, 832
BseRI	GAGGAG	2 cut(s)	507, 722
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	7 cut(s)	148, 200, 235, 361, 439, 461, 950
Bsh1236I	CGCG	2 cut(s)	476, 770
BshFI	GGCC	1 cut(s)	576
BshNI	GGYRCC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	2 cut(s)	92, 553
BsmAI	GTCTC	2 cut(s)	321, 663
BsmFI	GGGAC	1 cut(s)	691
BsnI	GGCC	1 cut(s)	576
Bso31I	GGTCTC	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	44, 234
Bsp143I	GATC	2 cut(s)	944, 986
BspACI	CCGC	2 cut(s)	770, 928
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	6 cut(s)	69, 109, 246, 436, 775, 799
BspFNI	CGCG	2 cut(s)	476, 770
BspLI	GGNNCC	3 cut(s)	261, 349, 988
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	981, 994
BspT107I	GGYRCC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	329, 832
BssECI	CCNNGG	3 cut(s)	612, 856, 981
BssMI	GATC	2 cut(s)	944, 986
BssT1I	CCWWGG	2 cut(s)	612, 856
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	315, 913
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	5 cut(s)	221, 574, 721, 757, 768
BstDEI	CTNAG	7 cut(s)	77, 117, 233, 423, 783, 807, 848
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	4 cut(s)	42, 289, 643, 697
BstFNI	CGCG	2 cut(s)	476, 770
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	766, 927
BstKTI	GATC	2 cut(s)	947, 989
BstMAI	GTCTC	2 cut(s)	321, 663
BstMBI	GATC	2 cut(s)	944, 986
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 229, 268, 680, 761
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	476, 770
BstV1I	GCAGC	7 cut(s)	148, 200, 235, 361, 439, 461, 950
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
BsuRI	GGCC	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	981
BtgZI	GCGATG	2 cut(s)	28, 977
BtsCI	GGATG	4 cut(s)	42, 289, 643, 697
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	3 cut(s)	336, 842, 909
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	5 cut(s)	221, 574, 721, 757, 768
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	2 cut(s)	766, 927
CseI	GACGC	2 cut(s)	344, 482
Csp6I	GTAC	4 cut(s)	544, 592, 738, 902
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	5 cut(s)	49, 399, 566, 922, 932
CviQI	GTAC	4 cut(s)	544, 592, 738, 902
DdeI	CTNAG	7 cut(s)	77, 117, 233, 423, 783, 807, 848
DpnI	GATC	2 cut(s)	946, 988
DpnII	GATC	2 cut(s)	944, 986
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	612, 856
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	480
Eco47III	AGCGCT	1 cut(s)	765
Eco57I	CTGAAG	2 cut(s)	311, 350
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	612, 856
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	612, 856
FaeI	CATG	5 cut(s)	52, 402, 569, 925, 935
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	5 cut(s)	48, 398, 565, 921, 931
FauI	CCCGC	1 cut(s)	763
Fnu4HI	GCNGC	8 cut(s)	137, 189, 249, 375, 428, 450, 928, 939
FokI	GGATG	4 cut(s)	49, 296, 650, 704
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	8 cut(s)	137, 189, 249, 375, 428, 450, 928, 939
FspBI	CTAG	5 cut(s)	252, 630, 818, 857, 1033
GlaI	GCGC	2 cut(s)	765, 926
GluI	GCNGC	8 cut(s)	137, 189, 249, 375, 428, 450, 928, 939
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	576
HgaI	GACGC	2 cut(s)	344, 482
HhaI	GCGC	2 cut(s)	766, 927
Hin1II	CATG	5 cut(s)	52, 402, 569, 925, 935
Hin6I	GCGC	2 cut(s)	764, 925
HinP1I	GCGC	2 cut(s)	764, 925
HinfI	GANTC	4 cut(s)	96, 466, 839, 881
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	2 cut(s)	334, 465
Hpy188I	TCNGA	6 cut(s)	118, 236, 369, 540, 880, 893
Hpy188III	TCNNGA	3 cut(s)	470, 583, 646
Hpy8I	GTNNAC	2 cut(s)	334, 465
HpyAV	CCTTC	3 cut(s)	643, 647, 965
HpyCH4III	ACNGT	2 cut(s)	315, 913
HpyCH4V	TGCA	7 cut(s)	52, 214, 398, 683, 719, 993, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 229, 268, 680, 761
HpyF3I	CTNAG	7 cut(s)	77, 117, 233, 423, 783, 807, 848
Hsp92II	CATG	5 cut(s)	52, 402, 569, 925, 935
HspAI	GCGC	2 cut(s)	764, 925
Kzo9I	GATC	2 cut(s)	944, 986
Lsp1109I	GCAGC	7 cut(s)	148, 200, 235, 361, 439, 461, 950
LweI	GCATC	5 cut(s)	5, 227, 628, 1002, 1012
MaeI	CTAG	5 cut(s)	252, 630, 818, 857, 1033
MaeIII	GTNAC	2 cut(s)	324, 524
MalI	GATC	2 cut(s)	946, 988
MboI	GATC	2 cut(s)	944, 986
MboII	GAAGA	4 cut(s)	105, 311, 356, 599
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	2 cut(s)	44, 234
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	2 cut(s)	25, 519
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	2 cut(s)	364, 816
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	3 cut(s)	204, 714, 917
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	2 cut(s)	476, 770
MwoI	GCNNNNNNNGC	5 cut(s)	220, 229, 268, 680, 761
NdeII	GATC	2 cut(s)	944, 986
NlaIII	CATG	5 cut(s)	52, 402, 569, 925, 935
NlaIV	GGNNCC	3 cut(s)	261, 349, 988
NmuCI	GTSAC	2 cut(s)	324, 524
NsiI	ATGCAT	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	96, 839, 881
PkrI	GCNGC	8 cut(s)	138, 190, 250, 376, 429, 451, 929, 940
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	261, 349, 988
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	986
RsaI	GTAC	4 cut(s)	545, 593, 739, 903
RsaNI	GTAC	4 cut(s)	544, 592, 738, 902
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	204, 714, 917
SatI	GCNGC	8 cut(s)	137, 189, 249, 375, 428, 450, 928, 939
Sau3AI	GATC	2 cut(s)	944, 986
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	44, 234
SfaNI	GCATC	5 cut(s)	5, 227, 628, 1002, 1012
SmiMI	CAYNNNNRTG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	2 cut(s)	25, 519
SsiI	CCGC	2 cut(s)	770, 928
SspMI	CTAG	5 cut(s)	252, 630, 818, 857, 1033
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	2 cut(s)	612, 856
TaaI	ACNGT	2 cut(s)	315, 913
TaqI	TCGA	1 cut(s)	996
TasI	AATT	2 cut(s)	25, 519
TatI	WGTACW	1 cut(s)	901
TauI	GCSGC	1 cut(s)	930
TfiI	GAWTC	3 cut(s)	96, 839, 881
Tru1I	TTAA	3 cut(s)	204, 714, 917
Tru9I	TTAA	3 cut(s)	204, 714, 917
TscAI	CASTG	3 cut(s)	336, 849, 916
TseFI	GTSAC	2 cut(s)	324, 524
TseI	GCWGC	7 cut(s)	136, 188, 248, 374, 427, 449, 938
Tsp45I	GTSAC	2 cut(s)	324, 524
TspDTI	ATGAA	2 cut(s)	582, 948
TspGWI	ACGGA	1 cut(s)	970
TspRI	CASTG	3 cut(s)	336, 849, 916
XapI	RAATTY	1 cut(s)	25
XmaJI	CCTAGG	1 cut(s)	856
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	5 cut(s)	252, 630, 818, 857, 1033
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.