Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Reverse (-)

3427687 .. 3430296

Gene Structure 2610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGCACTCTCATGCATTGCCTATCATATAAACCCCAAGTGAGATTTCCGACTTTTGGAATCACACTATGCTCATCTTCTGAGGTTAGTGTGTCAAGGCAGCAAGTTTTGAAGCAAGTGGATAAGGAGTTGGCTAAAGGAGATGAGAGGGCAGCTCTTTCACTTGTTAAAGATTTGCAGGGCAAGCCTGGTGGCCTCAGATGCTTTGGTGTTGCTAGGCAGGTGCCTCAAAGGCTTTACACTTTGGATGAGCTGAAGCTGAATGGAATAGTAACTCAGTCTCTTCTGTCACCAGTGGATGCTACTCTTGGTTCCATAGAAAGAAATCTTCAGATTGCTGCTGTGGTTGGAGGTGTTTCTGCATGGAATGTTTTCGGGTTTAGTCCTCAGCAGCTTTTCTATGCTTCTTTAGCAGCATTGTTTCTGTGGACTCTGGACGCGATATCTTTCAATGGAGGAGTTAGTAGCTTGGCTATTGATACAATTGGTCACACCTTTAGTCAGAAGTACCACAATAGGGTCATTCAACATGAAGCTGGCCATTTCTTGATTGCGTACTTGCTTGGTATTCTTCCCAAGGGATATACACTAACTAGTTTGGATGCATTCAAGAAGGAAGGGTCTCTCAATGTTCAAGCAGGGACCGCGTTTGTGGATGTGGAGTTTGTTGAGGAGGTTAAAGCAGGCAAAGTATCAGCAAGTGTACGTTTTCTACCCCTCGTCTCAAAAATTTCTGATTACATCTCCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.24

Weight (kDa)

8.71

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	2 cut(s)	440, 647
AciI	CCGC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	2 cut(s)	275, 314
AfaI	GTAC	3 cut(s)	509, 557, 705
AfiI	CCNNNNNNNGG	2 cut(s)	56, 517
AgsI	TTSAA	5 cut(s)	112, 451, 527, 610, 635
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	6 cut(s)	155, 253, 259, 394, 468, 536
AluI	AGCT	6 cut(s)	155, 253, 259, 394, 468, 536
Alw26I	GTCTC	3 cut(s)	285, 627, 727
AoxI	GGCC	2 cut(s)	193, 538
ApeKI	GCWGC	5 cut(s)	100, 152, 338, 391, 413
ApoI	RAATTY	1 cut(s)	729
Asp700I	GAANNNNTTC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	5 cut(s)	112, 164, 325, 403, 425
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	285, 627, 727
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	216, 594
BfuAI	ACCTGC	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	232
BisI	GCNGC	5 cut(s)	101, 153, 339, 392, 414
BlsI	GCNGC	5 cut(s)	102, 154, 340, 393, 415
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	3 cut(s)	225, 313, 643
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	191, 289, 592
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
Bpu10I	CCTNAGC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 517
Bse1I	ACTGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	4 cut(s)	253, 304, 607, 661
BseLI	CCNNNNNNNGG	2 cut(s)	56, 517
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	4 cut(s)	72, 211, 290, 401
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	2 cut(s)	471, 686
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	112, 164, 325, 403, 425
Bsh1236I	CGCG	2 cut(s)	440, 647
BshFI	GGCC	2 cut(s)	195, 540
BshNI	GGYRCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	2 cut(s)	56, 517
BsmAI	GTCTC	3 cut(s)	285, 627, 727
BsmBI	CGTCTC	1 cut(s)	727
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	195, 540
Bso31I	GGTCTC	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	2 cut(s)	195, 540
BspCNI	CTCAG	4 cut(s)	73, 210, 289, 400
BspFNI	CGCG	2 cut(s)	440, 647
BspLI	GGNNCC	3 cut(s)	225, 313, 643
BspMI	ACCTGC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	185, 538, 685
BstDEI	CTNAG	4 cut(s)	81, 197, 276, 387
BstF5I	GGATG	4 cut(s)	253, 304, 607, 661
BstFNI	CGCG	2 cut(s)	440, 647
BstMAI	GTCTC	3 cut(s)	285, 627, 727
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 201, 232, 410, 644
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	440, 647
BstV1I	GCAGC	5 cut(s)	112, 164, 325, 403, 425
BsuRI	GGCC	2 cut(s)	195, 540
BtsCI	GGATG	4 cut(s)	253, 304, 607, 661
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	185, 538, 685
Cfr13I	GGNCC	1 cut(s)	642
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	508, 556, 704
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	3 cut(s)	13, 363, 530
CviQI	GTAC	3 cut(s)	508, 556, 704
DdeI	CTNAG	4 cut(s)	81, 197, 276, 387
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	627
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	642
Eco57I	CTGAAG	2 cut(s)	275, 314
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	2 cut(s)	18, 607
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	727
FaeI	CATG	3 cut(s)	16, 366, 533
FaiI	YATR	9 cut(s)	14, 28, 30, 70, 317, 364, 402, 531, 585
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	3 cut(s)	12, 362, 529
Fnu4HI	GCNGC	5 cut(s)	101, 153, 339, 392, 414
FokI	GGATG	4 cut(s)	260, 311, 614, 668
Fsp4HI	GCNGC	5 cut(s)	101, 153, 339, 392, 414
FspBI	CTAG	2 cut(s)	216, 594
GluI	GCNGC	5 cut(s)	101, 153, 339, 392, 414
HaeIII	GGCC	2 cut(s)	195, 540
HgaI	GACGC	1 cut(s)	446
Hin1II	CATG	3 cut(s)	16, 366, 533
HinfI	GANTC	2 cut(s)	60, 430
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	429, 704
Hpy188I	TCNGA	6 cut(s)	51, 82, 200, 333, 504, 736
Hpy188III	TCNNGA	3 cut(s)	434, 547, 610
Hpy8I	GTNNAC	2 cut(s)	429, 704
HpyAV	CCTTC	2 cut(s)	607, 611
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	4 cut(s)	16, 178, 362, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 201, 232, 410, 644
HpyF3I	CTNAG	4 cut(s)	81, 197, 276, 387
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	3 cut(s)	16, 366, 533
LpnPI	CCDG	9 cut(s)	164, 174, 201, 206, 306, 419, 522, 624, 669
Lsp1109I	GCAGC	5 cut(s)	112, 164, 325, 403, 425
LweI	GCATC	3 cut(s)	191, 289, 592
MaeI	CTAG	2 cut(s)	216, 594
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	271, 288, 488
MboII	GAAGA	4 cut(s)	69, 275, 320, 563
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	2 cut(s)	483, 729
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	74, 328
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	2 cut(s)	18, 607
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	2 cut(s)	168, 678
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	2 cut(s)	440, 647
MwoI	GCNNNNNNNGC	5 cut(s)	184, 201, 232, 410, 644
NlaIII	CATG	3 cut(s)	16, 366, 533
NlaIV	GGNNCC	3 cut(s)	225, 313, 643
NmuCI	GTSAC	2 cut(s)	288, 488
NsiI	ATGCAT	2 cut(s)	18, 607
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	102, 154, 340, 393, 415
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	225, 313, 643
PspPI	GGNCC	1 cut(s)	642
RsaI	GTAC	3 cut(s)	509, 557, 705
RsaNI	GTAC	3 cut(s)	508, 556, 704
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	168, 678
SatI	GCNGC	5 cut(s)	101, 153, 339, 392, 414
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	191, 289, 592
SinI	GGWCC	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	2 cut(s)	483, 729
SsiI	CCGC	1 cut(s)	645
SspMI	CTAG	2 cut(s)	216, 594
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	576
TaiI	ACGT	1 cut(s)	709
TasI	AATT	2 cut(s)	483, 729
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	168, 678
Tru9I	TTAA	2 cut(s)	168, 678
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	288, 488
TseI	GCWGC	5 cut(s)	100, 152, 338, 391, 413
Tsp45I	GTSAC	2 cut(s)	288, 488
TspDTI	ATGAA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	642
XapI	RAATTY	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	2 cut(s)	216, 594
Zsp2I	ATGCAT	2 cut(s)	18, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.