Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006659

Physical Location & Seq

Genomic Coordinates Reverse (-)

3639454 .. 3641632

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGCACTCTCATGCATTGCCTATCATATAAACCCCAAGTGAGATTTCCGACTTTTGGAATCACACTATGCTCATCTTCTGAGGTTAGTGTGTCAAGGCAGCAAGTTTTGAAGCAAGTGGATAAGGAGTTGGCTAAAGGAGATGAGAGGGCAGCTCTTTCACTTGTTAAAGATTTGCAGGGCAAGCCTGGTGGCCTCAGATGCTTTGGTGCTGCTAGGCAGGTGCCTCAAAGGCTTTACACTTTGGATGAGCTGAAGCTGAATGGAATAGTTACACAGTCTCTTCTGTCACCAGTGGATGCGACTCTTGGTTCCATAGAAAGAAATCTTCAGATTGCTGCTGTGGTTGGAGGTGTTTCTGCATGGAATGTTTTCGGGTTTAGTCCTCAGCAGCTTTTCTATGCTTCTTTAGCAGCATTGTTTCTGTGGACTCTGGACGCGATATCTTTCAATGGAGGAGTTAGTAGCTTGGCTATTGATACAATTGGTCACACCTTTAGTCAGAAGTACCACAATAGGGTCATTCAACATGAAGCTGGCCATTTCTTGATTGCGTACTTGCTTGGTATTCTTCCCAAGGGATATACACTAACTAGTTTGGATGCATTCAAGAAGGAAGGGTCTCTCAATGTTCAAGCAGGGACCGCGTTTGTGGATGTTGAGTTTGTTGAGGAGGTTAAAGCAGGCAAAGTATCAGCAAGTACGCTGAACAGATTTGCGTGTGTAGCGCTCGCGGGTGTTGTTGCTGAGTATCTTTTATACGGTTATGCTGAGGGTGGTCTAGCTGATATAAACCAGTTGGATTCACTGCTTAGAAGCCTAGGCTTCACACAAAAGAAATCCGATTCACAAGTCAGATGGTCTGTACTAAACACTGTCTTAATCATGCGCCGCCATGAAGCAGCACGAGCTAAACTCGCAGAGGCAATGGCAGAAGGAAAATCCGTGGGATCCTGCATCGACATTATAGAGAATACCATAGGCGATGCAGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

35.84

Weight (kDa)

7.0

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27290 AT5G27290
fragaria_vesca	FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940 FvH4_6g04940
malus_domestica	MD04G1212700.v1.1
prunus_persica	Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1 Prupe.6G333000_v2.0.a1
pyrus_communis	pycom04g18870
rosa_chinensis	RchiOBHm_Chr3g0453431
rosa_laevigata	RLG00000025515
rosa_multiflora	Rmu_co8098660.1_g000001 Rmu_sc0000510.1_g000005 Rmu_sc0037544.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430400
rosa_rugosa	Rorug02G0648800 Rorug02G0648900 Rorug02G0649000
rosa_samantha	Rh3AG051800 Rh3BG053200 Rh3CG052500 Rh3DG053300
rosa_wichuraiana	Rw3G003980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
AatII	GACGTC	1 cut(s)	996
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	3 cut(s)	440, 647, 734
AciI	CCGC	3 cut(s)	645, 734, 892
AclWI	GGATC	2 cut(s)	945, 958
AcoI	YGGCCR	1 cut(s)	538
AcuI	CTGAAG	2 cut(s)	275, 314
AcyI	GRCGYC	1 cut(s)	993
AfaI	GTAC	4 cut(s)	509, 557, 703, 867
AfeI	AGCGCT	1 cut(s)	729
AfiI	CCNNNNNNNGG	2 cut(s)	56, 517
AgsI	TTSAA	5 cut(s)	112, 451, 527, 610, 635
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	8 cut(s)	155, 253, 259, 394, 468, 536, 785, 911
AluI	AGCT	8 cut(s)	155, 253, 259, 394, 468, 536, 785, 911
Alw26I	GTCTC	2 cut(s)	285, 627
AlwI	GGATC	2 cut(s)	945, 958
Aor51HI	AGCGCT	1 cut(s)	729
AoxI	GGCC	2 cut(s)	193, 538
ApeKI	GCWGC	7 cut(s)	100, 152, 212, 338, 391, 413, 902
Asp700I	GAANNNNTTC	1 cut(s)	371
AspA2I	CCTAGG	1 cut(s)	820
AspLEI	GCGC	2 cut(s)	730, 891
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	642
AvrII	CCTAGG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	950
BanI	GGYRCC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	906
BbvCI	CCTCAGC	2 cut(s)	387, 771
BbvI	GCAGC	7 cut(s)	112, 164, 199, 325, 403, 425, 914
BccI	CCATC	1 cut(s)	852
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	285, 627
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	5 cut(s)	216, 594, 782, 821, 997
BfoI	RGCGCY	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	232
BisI	GCNGC	8 cut(s)	101, 153, 213, 339, 392, 414, 892, 903
BlnI	CCTAGG	1 cut(s)	820
BlsI	GCNGC	8 cut(s)	102, 154, 214, 340, 393, 415, 893, 904
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	4 cut(s)	225, 313, 643, 952
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	5 cut(s)	191, 289, 592, 966, 976
BplI	GAGNNNNNCTC	4 cut(s)	139, 171, 900, 932
Bpu10I	CCTNAGC	2 cut(s)	387, 771
BsaHI	GRCGYC	1 cut(s)	993
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	3 cut(s)	576, 820, 945
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 517
Bse1I	ACTGG	2 cut(s)	293, 796
Bse3DI	GCAATG	2 cut(s)	16, 933
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	576, 820, 945
BseGI	GGATG	4 cut(s)	253, 304, 607, 661
BseLI	CCNNNNNNNGG	2 cut(s)	56, 517
BseMI	GCAATG	2 cut(s)	16, 933
BseMII	CTCAG	5 cut(s)	72, 211, 401, 738, 762
BseNI	ACTGG	2 cut(s)	293, 796
BseRI	GAGGAG	2 cut(s)	471, 686
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	7 cut(s)	112, 164, 199, 325, 403, 425, 914
Bsh1236I	CGCG	3 cut(s)	440, 647, 734
BshFI	GGCC	2 cut(s)	195, 540
BshNI	GGYRCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	2 cut(s)	56, 517
BsmAI	GTCTC	2 cut(s)	285, 627
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	195, 540
Bso31I	GGTCTC	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	950
BspACI	CCGC	3 cut(s)	645, 734, 892
BspANI	GGCC	2 cut(s)	195, 540
BspCNI	CTCAG	5 cut(s)	73, 210, 400, 739, 763
BspFNI	CGCG	3 cut(s)	440, 647, 734
BspLI	GGNNCC	4 cut(s)	225, 313, 643, 952
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	945, 958
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	627
BsrDI	GCAATG	2 cut(s)	16, 933
BsrI	ACTGG	2 cut(s)	293, 796
BssECI	CCNNGG	3 cut(s)	576, 820, 945
BssMI	GATC	1 cut(s)	950
BssNI	GRCGYC	1 cut(s)	993
BssSI	CACGAG	1 cut(s)	906
BssT1I	CCWWGG	2 cut(s)	576, 820
Bst2BI	CACGAG	1 cut(s)	906
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	279, 764, 877
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	993
BstC8I	GCNNGC	4 cut(s)	185, 538, 685, 732
BstDEI	CTNAG	6 cut(s)	81, 197, 387, 747, 771, 812
BstDSI	CCRYGG	1 cut(s)	945
BstF5I	GGATG	4 cut(s)	253, 304, 607, 661
BstFNI	CGCG	3 cut(s)	440, 647, 734
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	2 cut(s)	730, 891
BstKTI	GATC	1 cut(s)	953
BstMAI	GTCTC	2 cut(s)	285, 627
BstMBI	GATC	1 cut(s)	950
BstMWI	GCNNNNNNNGC	8 cut(s)	184, 201, 232, 410, 644, 725, 908, 917
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	440, 647, 734
BstV1I	GCAGC	7 cut(s)	112, 164, 199, 325, 403, 425, 914
BstX2I	RGATCY	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	950
BsuRI	GGCC	2 cut(s)	195, 540
BtgI	CCRYGG	1 cut(s)	945
BtsCI	GGATG	4 cut(s)	253, 304, 607, 661
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	3 cut(s)	300, 806, 873
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	4 cut(s)	185, 538, 685, 732
CfoI	GCGC	2 cut(s)	730, 891
Cfr13I	GGNCC	1 cut(s)	642
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	4 cut(s)	508, 556, 702, 866
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	5 cut(s)	13, 363, 530, 886, 896
CviQI	GTAC	4 cut(s)	508, 556, 702, 866
DdeI	CTNAG	6 cut(s)	81, 197, 387, 747, 771, 812
DpnI	GATC	1 cut(s)	952
DpnII	GATC	1 cut(s)	950
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	576, 820
Eco31I	GGTCTC	1 cut(s)	627
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	642
Eco47III	AGCGCT	1 cut(s)	729
Eco57I	CTGAAG	2 cut(s)	275, 314
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	576, 820
EcoT22I	ATGCAT	2 cut(s)	18, 607
ErhI	CCWWGG	2 cut(s)	576, 820
FaeI	CATG	5 cut(s)	16, 366, 533, 889, 899
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	5 cut(s)	12, 362, 529, 885, 895
FauI	CCCGC	1 cut(s)	727
Fnu4HI	GCNGC	8 cut(s)	101, 153, 213, 339, 392, 414, 892, 903
FokI	GGATG	4 cut(s)	260, 311, 614, 668
Fsp4HI	GCNGC	8 cut(s)	101, 153, 213, 339, 392, 414, 892, 903
FspBI	CTAG	5 cut(s)	216, 594, 782, 821, 997
GlaI	GCGC	2 cut(s)	729, 890
GluI	GCNGC	8 cut(s)	101, 153, 213, 339, 392, 414, 892, 903
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	2 cut(s)	195, 540
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	2 cut(s)	730, 891
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	5 cut(s)	16, 366, 533, 889, 899
Hin6I	GCGC	2 cut(s)	728, 889
HinP1I	GCGC	2 cut(s)	728, 889
HinfI	GANTC	5 cut(s)	60, 304, 430, 803, 845
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	7 cut(s)	51, 82, 200, 333, 504, 844, 857
Hpy188III	TCNNGA	3 cut(s)	434, 547, 610
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	607, 611, 929
HpyCH4III	ACNGT	3 cut(s)	279, 764, 877
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	6 cut(s)	16, 178, 362, 605, 957, 989
HpyF10VI	GCNNNNNNNGC	8 cut(s)	184, 201, 232, 410, 644, 725, 908, 917
HpyF3I	CTNAG	6 cut(s)	81, 197, 387, 747, 771, 812
HpySE526I	ACGT	1 cut(s)	993
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	5 cut(s)	16, 366, 533, 889, 899
HspAI	GCGC	2 cut(s)	728, 889
Kzo9I	GATC	1 cut(s)	950
Lsp1109I	GCAGC	7 cut(s)	112, 164, 199, 325, 403, 425, 914
LweI	GCATC	5 cut(s)	191, 289, 592, 966, 976
MaeI	CTAG	5 cut(s)	216, 594, 782, 821, 997
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	3 cut(s)	271, 288, 488
MalI	GATC	1 cut(s)	952
MboI	GATC	1 cut(s)	950
MboII	GAAGA	4 cut(s)	69, 275, 320, 563
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	950
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	1 cut(s)	483
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	298, 424
MmeI	TCCRAC	3 cut(s)	74, 328, 780
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	2 cut(s)	18, 607
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	3 cut(s)	168, 678, 881
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	3 cut(s)	440, 647, 734
MwoI	GCNNNNNNNGC	8 cut(s)	184, 201, 232, 410, 644, 725, 908, 917
NdeII	GATC	1 cut(s)	950
NlaIII	CATG	5 cut(s)	16, 366, 533, 889, 899
NlaIV	GGNNCC	4 cut(s)	225, 313, 643, 952
NmuCI	GTSAC	2 cut(s)	288, 488
NsiI	ATGCAT	2 cut(s)	18, 607
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	60, 803, 845
PkrI	GCNGC	8 cut(s)	102, 154, 214, 340, 393, 415, 893, 904
PleI	GAGTC	2 cut(s)	298, 424
PpsI	GAGTC	2 cut(s)	298, 424
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	4 cut(s)	225, 313, 643, 952
PspPI	GGNCC	1 cut(s)	642
PsuI	RGATCY	1 cut(s)	950
RsaI	GTAC	4 cut(s)	509, 557, 703, 867
RsaNI	GTAC	4 cut(s)	508, 556, 702, 866
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	168, 678, 881
SatI	GCNGC	8 cut(s)	101, 153, 213, 339, 392, 414, 892, 903
Sau3AI	GATC	1 cut(s)	950
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	2 cut(s)	298, 424
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	191, 289, 592, 966, 976
SinI	GGWCC	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	645, 734, 892
SspMI	CTAG	5 cut(s)	216, 594, 782, 821, 997
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	576, 820
TaaI	ACNGT	3 cut(s)	279, 764, 877
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	1 cut(s)	960
TasI	AATT	1 cut(s)	483
TatI	WGTACW	1 cut(s)	865
TauI	GCSGC	1 cut(s)	894
TfiI	GAWTC	3 cut(s)	60, 803, 845
Tru1I	TTAA	3 cut(s)	168, 678, 881
Tru9I	TTAA	3 cut(s)	168, 678, 881
TscAI	CASTG	3 cut(s)	300, 813, 880
TseFI	GTSAC	2 cut(s)	288, 488
TseI	GCWGC	7 cut(s)	100, 152, 212, 338, 391, 413, 902
Tsp45I	GTSAC	2 cut(s)	288, 488
TspDTI	ATGAA	2 cut(s)	546, 912
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	3 cut(s)	300, 813, 880
VpaK11BI	GGWCC	1 cut(s)	642
XmaJI	CCTAGG	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	5 cut(s)	216, 594, 782, 821, 997
ZraI	GACGTC	1 cut(s)	994
Zsp2I	ATGCAT	2 cut(s)	18, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.