AT5G29560

Caleosin related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011702
Physical Location & Seq
Reverse (-)
11190414 .. 11191967
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G29560.1

Sequence Viewer

Length: 543 bp
ATGTCGACAGATCACGCAAGAGCAGATTCGATTGCTACGGTGGCTGAGAAAGCCCCTGTCACAGCGGAGAGGAGAGTCCGTACTGATCTCGATGATCGTCTCCCTAAACCATATGTGCCTCGAGCAATGGTTGCACCAGACATGGAAAACGTTAACGGGACAAGAGGACACAAGCACCGGGACATGTCGGTTCTTCAGCAACACATTGCTTTCTTTGACCAGGATGGTGATGGTATCATCTACCCATCAGAGACATTTAGAGGATTTAGAGCACTTGGTTTCAACTTGGTTTCTAGTATCTTTCTAACAATCATTGTGCATCTTACAATGAGTTATGCTACATTGCCTACTTGGATGCCTTCTCCTACCTTCCCGATTTACATCAAGAACATCCATAGAGCCAAACATGGAAGCGACACTTCAACTTACGACACAGAAGGAAGGTACATTCCTGCAAATCTTGAGAACATGTTTAGTAAGTATGCCCGTACAGTGCCTGACAAGCTAACTCTGTTACGAGCTGTGGCAAATGACGGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Caleosin

Protein Analysis

180

Amino Acids

20.23

Weight (kDa)

8.03

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 61 - 171 7.3e-51 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 65
AclI AACGTT 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 3 cut(s) 82, 446, 490
AflIII ACRYGT 2 cut(s) 183, 468
AgsI TTSAA 2 cut(s) 283, 423
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 3 cut(s) 505, 521, 540
AluI AGCT 3 cut(s) 505, 521, 540
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 104, 245
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 274
BccI CCATC 3 cut(s) 218, 224, 253
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 104, 245
BfaI CTAG 1 cut(s) 294
Bme1390I CCNGG 2 cut(s) 179, 221
BmeT110I CYCGRG 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 179, 221
BmsI GCATC 2 cut(s) 328, 345
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bse3DI GCAATG 3 cut(s) 132, 204, 341
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 3 cut(s) 229, 360, 390
BseJI GATNNNNATC 1 cut(s) 380
BseMI GCAATG 3 cut(s) 132, 204, 341
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 2 cut(s) 172, 194
BsmAI GTCTC 2 cut(s) 104, 245
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 172, 194
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 10, 85, 94
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 37
BsrDI GCAATG 3 cut(s) 132, 204, 341
BssMI GATC 3 cut(s) 10, 85, 94
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 40, 493
BstAPI GCANNNNNTGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 229, 360, 390
BstKTI GATC 3 cut(s) 13, 88, 97
BstMAI GTCTC 2 cut(s) 104, 245
BstMBI GATC 3 cut(s) 10, 85, 94
BstMWI GCNNNNNNNGC 4 cut(s) 41, 50, 131, 502
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 187, 472
BstSCI CCNGG 2 cut(s) 177, 219
BtsCI GGATG 3 cut(s) 229, 360, 390
BtsIMutI CAGTG 1 cut(s) 498
CaiI CAGNNNCTG 1 cut(s) 497
Csp6I GTAC 3 cut(s) 81, 445, 489
CviAII CATG 4 cut(s) 142, 184, 407, 469
CviJI RGCY 6 cut(s) 44, 53, 401, 505, 521, 540
CviKI_1 RGCY 6 cut(s) 44, 53, 401, 505, 521, 540
CviQI GTAC 3 cut(s) 81, 445, 489
DdeI CTNAG 1 cut(s) 45
DpnI GATC 3 cut(s) 12, 87, 96
DpnII GATC 3 cut(s) 10, 85, 94
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 4 cut(s) 145, 187, 410, 472
FaiI YATR 9 cut(s) 112, 114, 143, 185, 336, 396, 408, 470, 483
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 2 cut(s) 172, 194
FatI CATG 4 cut(s) 141, 183, 406, 468
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 5
FokI GGATG 3 cut(s) 236, 367, 377
FspBI CTAG 1 cut(s) 294
HapII CCGG 1 cut(s) 178
Hin1II CATG 4 cut(s) 145, 187, 410, 472
HincII GTYRAC 2 cut(s) 6, 154
HindII GTYRAC 2 cut(s) 6, 154
HinfI GANTC 2 cut(s) 26, 75
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 6, 154
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 4 cut(s) 89, 373, 385, 461
Hpy8I GTNNAC 2 cut(s) 6, 154
HpyAV CCTTC 4 cut(s) 369, 379, 431, 435
HpyCH4III ACNGT 2 cut(s) 40, 493
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 134, 319, 455
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 50, 131, 502
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 145, 187, 410, 472
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 3 cut(s) 10, 85, 94
LpnPI CCDG 7 cut(s) 69, 150, 191, 206, 233, 465, 510
LweI GCATC 2 cut(s) 328, 345
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 58, 513
MalI GATC 3 cut(s) 12, 87, 96
MboI GATC 3 cut(s) 10, 85, 94
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 274
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 4 cut(s) 63, 129, 158, 254
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 179, 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 41, 50, 131, 502
NciI CCSGG 1 cut(s) 179
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 10, 85, 94
NlaIII CATG 4 cut(s) 145, 187, 410, 472
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 2 cut(s) 187, 472
PaeR7I CTCGAG 1 cut(s) 120
PciI ACATGT 2 cut(s) 183, 468
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PscI ACATGT 2 cut(s) 183, 468
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 82, 446, 490
RsaNI GTAC 3 cut(s) 81, 445, 489
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 3 cut(s) 10, 85, 94
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 179, 221
SduI GDGCHC 1 cut(s) 274
SetI ASST 6 cut(s) 153, 371, 446, 507, 523, 542
SfaNI GCATC 2 cut(s) 328, 345
Sfr274I CTCGAG 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 120, 461
SmoI CTYRAG 2 cut(s) 120, 461
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 177, 219
TaaI ACNGT 2 cut(s) 40, 493
TaiI ACGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 5, 29, 90, 121
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 498
XceI RCATGY 2 cut(s) 187, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.