Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005902.1

Orthogroup ID

OG0011702

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1213

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005902.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 382 bp

atggcaacagtcgagcagcagcaacagccacaaccggaggaggcctcaaaggaagccatggccacggtggccgagaacgcaccgatcacagcggagaggaaggtccgcaatgacttggagaccaaactcccaaagccttacttgcctcgagctatggttgcacctgatatggagaacatcaatggcacctgggctcataaacatcaaaatatgtctgtgcttcaacagcatgcagctttttttgaccaagacaatgatggtatcatcttcccttccgagacattcagagggtttcgtcaacttgggtttaatgcagttgcttcttttattttcatggttcttgttcatggagcaatgagttatgctactctgcctgtaagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

127

Amino Acids

14.19

Weight (kDa)

5.47

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G29560
fragaria_vesca	FvH4_6g01660
malus_domestica	MD04G1231700.v1.1 MD12G1249700.v1.1
prunus_persica	Prupe.6G351100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449461
rosa_laevigata	RLG00000025829
rosa_multiflora	Rmu_sc0000430.1_g000025 Rmu_sc0005902.1_g000001 Rmu_sc0019012.1_g000005
rosa_roxburghii	Rroxscaffold_6G00427410
rosa_rugosa	Rorug02G0620800 Rorug02G0620900 Rorug02G0621000
rosa_samantha	Rh3AG018600 Rh3BG019000 Rh3CG017900 Rh3DG019200
rosa_wichuraiana	Rw3G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	2 cut(s)	92, 106
AcoI	YGGCCR	2 cut(s)	60, 69
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	2 cut(s)	152, 236
AluI	AGCT	2 cut(s)	152, 236
Alw26I	GTCTC	2 cut(s)	113, 272
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	3 cut(s)	42, 60, 69
ApeKI	GCWGC	3 cut(s)	16, 19, 233
AspS9I	GGNCC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	28, 31, 245
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	113, 272
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	17, 20, 234
BlsI	GCNGC	3 cut(s)	18, 21, 235
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	57, 63, 189
BsaWI	WCCGGW	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	115, 360
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	57, 63, 189
BseMI	GCAATG	2 cut(s)	115, 360
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	28, 31, 245
BshFI	GGCC	3 cut(s)	44, 62, 71
BshNI	GGYRCC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	113, 272
BsnI	GGCC	3 cut(s)	44, 62, 71
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	92, 106
BspANI	GGCC	3 cut(s)	44, 62, 71
BspLI	GGNNCC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	115, 360
BssECI	CCNNGG	3 cut(s)	57, 63, 189
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	10, 67
BstC8I	GCNNGC	1 cut(s)	231
BstDSI	CCRYGG	2 cut(s)	57, 63
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	2 cut(s)	113, 272
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 68, 77, 142, 158, 226
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	28, 31, 245
BsuRI	GGCC	3 cut(s)	44, 62, 71
BtgI	CCRYGG	2 cut(s)	57, 63
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	103
CviAII	CATG	4 cut(s)	58, 230, 334, 347
CviJI	RGCY	9 cut(s)	28, 44, 56, 62, 71, 136, 152, 194, 236
CviKI_1	RGCY	9 cut(s)	28, 44, 56, 62, 71, 136, 152, 194, 236
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
EaeI	YGGCCR	2 cut(s)	60, 69
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 233, 337, 350
FaiI	YATR	9 cut(s)	59, 155, 170, 198, 212, 231, 335, 348, 363
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	4 cut(s)	57, 229, 333, 346
Fnu4HI	GCNGC	3 cut(s)	17, 20, 234
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	3 cut(s)	17, 20, 234
GluI	GCNGC	3 cut(s)	17, 20, 234
HaeIII	GGCC	3 cut(s)	44, 62, 71
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	4 cut(s)	61, 233, 337, 350
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	277, 287
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	94, 282
HpyCH4III	ACNGT	2 cut(s)	10, 67
HpyCH4V	TGCA	3 cut(s)	161, 233, 314
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 68, 77, 142, 158, 226
Hsp92II	CATG	4 cut(s)	61, 233, 337, 350
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	4 cut(s)	48, 175, 177, 202
Lsp1109I	GCAGC	3 cut(s)	28, 31, 245
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	6 cut(s)	31, 34, 55, 90, 156, 281
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	6 cut(s)	25, 68, 77, 142, 158, 226
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	4 cut(s)	61, 233, 337, 350
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	97
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	18, 21, 235
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	103
PspXI	VCTCGAGB	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	17, 20, 234
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	5 cut(s)	105, 154, 166, 191, 238
SfiI	GGCCNNNNNGGCC	1 cut(s)	68
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	233
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	92, 106
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	10, 67
TaqI	TCGA	2 cut(s)	12, 148
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	3 cut(s)	16, 19, 233
TspDTI	ATGAA	2 cut(s)	322, 335
VpaK11BI	GGWCC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 254
XhoI	CTCGAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.