Rmu_sc0000430.1_g000025

Caleosin related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000430.1
OG0011702
Physical Location & Seq
Forward (+)
101498 .. 103367
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000430.1_g000025.1.cds

Sequence Viewer

Length: 750 bp
atggcaacagtcgagcagcagcaacagccacaaccggaggaggcctcaaaggaagccatggccacggtggccgagaacgcaccgatcacagcggagaggaaggtccgcaatgacttggagaccaaactcccaaagccttacttgcctcgagctatggttgcacctgatatggagaacatcaatggcacctgggctcataaacatcaaaatatgtctgtgcttcaacagcatgcagctttttttgaccaagacaatgatggtatcatcttcccttccgagacattcagagggtttcgtcaacttgggtttaatgcagttgcttcttttattttcatggttcttgttcatggagcaatgagttatgctactctgcctacatggattccttcaccctacttcgcaattcacatacgaaacatacacaaggcaaagcacggaagtgattcggggatttatgatacggaaggaaggtatatcccggcaaaccttgagatcatgttcagcaagtatgctcgcacggtccctgataagcttagtttcaaggagctgtggcacatgactcaagctaaccgtgacgcctttgatttctttggctggattgcagccaaactggaatggggagttctatatgttctggcaaaagatgaacaaggttacttggcaaaggaagccgtgaggcgttgttttgatggaagcttgttcgagtactgtgctaagctgcaaaagggtgctgtgggtaagatgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Caleosin

Protein Analysis

249

Amino Acids

28.3

Weight (kDa)

7.1

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 2 cut(s) 92, 106
AcoI YGGCCR 2 cut(s) 60, 69
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 1 cut(s) 707
AgsI TTSAA 2 cut(s) 224, 541
AjnI CCWGG 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 7 cut(s) 152, 236, 532, 547, 566, 696, 718
AluI AGCT 7 cut(s) 152, 236, 532, 547, 566, 696, 718
Alw26I GTCTC 2 cut(s) 113, 272
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 3 cut(s) 42, 60, 69
ApeKI GCWGC 5 cut(s) 16, 19, 233, 602, 718
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 103, 520
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 381
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 103, 520
BalI TGGCCA 1 cut(s) 62
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 196
BbvI GCAGC 5 cut(s) 28, 31, 245, 614, 705
BccI CCATC 2 cut(s) 251, 683
BceAI ACGGC 1 cut(s) 656
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 113, 272
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 5 cut(s) 17, 20, 234, 603, 719
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 5 cut(s) 18, 21, 235, 604, 720
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 2 cut(s) 190, 479
Bme18I GGWCC 2 cut(s) 103, 520
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 103, 520
BmiI GGNNCC 2 cut(s) 187, 522
BmrFI CCNGG 2 cut(s) 190, 479
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 509, 546
BpuMI CCSGG 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 57, 63, 189
BsaWI WCCGGW 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 115, 360
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 3 cut(s) 57, 63, 189
BseMI GCAATG 2 cut(s) 115, 360
BseNI ACTGG 1 cut(s) 615
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 5 cut(s) 28, 31, 245, 614, 705
BshFI GGCC 3 cut(s) 44, 62, 71
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 35, 479
BslFI GGGAC 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 113, 272
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 3 cut(s) 44, 62, 71
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 84, 492
Bsp1720I GCTNAGC 1 cut(s) 714
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 92, 106
BspANI GGCC 3 cut(s) 44, 62, 71
BspLI GGNNCC 2 cut(s) 187, 522
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 115, 360
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 3 cut(s) 57, 63, 189
BssMI GATC 2 cut(s) 84, 492
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 5 cut(s) 10, 67, 520, 572, 710
BstACI GRCGYC 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 231, 514
BstDEI CTNAG 2 cut(s) 533, 714
BstDSI CCRYGG 2 cut(s) 57, 63
BstKTI GATC 2 cut(s) 87, 495
BstMAI GTCTC 2 cut(s) 113, 272
BstMBI GATC 2 cut(s) 84, 492
BstMWI GCNNNNNNNGC 7 cut(s) 25, 68, 77, 142, 158, 226, 668
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 188, 477
BstV1I GCAGC 5 cut(s) 28, 31, 245, 614, 705
BsuRI GGCC 3 cut(s) 44, 62, 71
BtgI CCRYGG 2 cut(s) 57, 63
Cac8I GCNNGC 2 cut(s) 231, 514
Cfr13I GGNCC 2 cut(s) 103, 520
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 706
CviAII CATG 7 cut(s) 58, 230, 334, 347, 378, 496, 556
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 2 cut(s) 533, 714
DpnI GATC 2 cut(s) 86, 494
DpnII GATC 2 cut(s) 84, 492
EaeI YGGCCR 2 cut(s) 60, 69
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 103, 520
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 506
FatI CATG 7 cut(s) 57, 229, 333, 346, 377, 495, 555
Fnu4HI GCNGC 5 cut(s) 17, 20, 234, 603, 719
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 5 cut(s) 17, 20, 234, 603, 719
GluI GCNGC 5 cut(s) 17, 20, 234, 603, 719
HaeIII GGCC 3 cut(s) 44, 62, 71
HapII CCGG 2 cut(s) 35, 479
HgaI GACGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HindIII AAGCTT 2 cut(s) 530, 694
HinfI GANTC 3 cut(s) 382, 443, 559
HpaII CCGG 2 cut(s) 35, 479
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 277, 287
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 5 cut(s) 94, 282, 396, 458, 462
HpyCH4III ACNGT 5 cut(s) 10, 67, 520, 572, 710
HpyCH4V TGCA 5 cut(s) 161, 233, 314, 602, 721
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 68, 77, 142, 158, 226, 668
HpyF3I CTNAG 2 cut(s) 533, 714
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
Kzo9I GATC 2 cut(s) 84, 492
LmnI GCTCC 2 cut(s) 350, 544
LpnPI CCDG 9 cut(s) 48, 175, 177, 202, 492, 537, 580, 596, 620
Lsp1109I GCAGC 5 cut(s) 28, 31, 245, 614, 705
MaeIII GTNAC 2 cut(s) 572, 653
MalI GATC 2 cut(s) 86, 494
MboI GATC 2 cut(s) 84, 492
MboII GAAGA 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 553
MnlI CCTC 7 cut(s) 31, 34, 55, 90, 156, 281, 669
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 2 cut(s) 35, 479
MspR9I CCNGG 2 cut(s) 190, 479
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 7 cut(s) 25, 68, 77, 142, 158, 226, 668
NciI CCSGG 1 cut(s) 479
NcoI CCATGG 1 cut(s) 57
NdeII GATC 2 cut(s) 84, 492
NlaIII CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
NlaIV GGNNCC 2 cut(s) 187, 522
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 438
PaeI GCATGC 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 147
PceI AGGCCT 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 382, 443
PkrI GCNGC 5 cut(s) 18, 21, 235, 604, 720
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 187, 522
PspPI GGNCC 2 cut(s) 103, 520
PspXI VCTCGAGB 1 cut(s) 147
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 5 cut(s) 17, 20, 234, 603, 719
Sau3AI GATC 2 cut(s) 84, 492
Sau96I GGNCC 2 cut(s) 103, 520
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 2 cut(s) 190, 479
SduI GDGCHC 1 cut(s) 196
SfiI GGCCNNNNNGGCC 1 cut(s) 68
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 103, 520
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 3 cut(s) 147, 488, 561
SmoI CTYRAG 3 cut(s) 147, 488, 561
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 402
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 2 cut(s) 92, 106
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 188, 477
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 10, 67, 520, 572, 710
TaqI TCGA 3 cut(s) 12, 148, 702
TasI AATT 1 cut(s) 402
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 2 cut(s) 382, 443
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 5 cut(s) 16, 19, 233, 602, 718
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 322, 335, 660
TspGWI ACGGA 2 cut(s) 450, 476
VpaK11BI GGWCC 2 cut(s) 103, 520
XceI RCATGY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 254
XhoI CTCGAG 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 442
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.