Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011702

Physical Location & Seq

Genomic Coordinates Reverse (-)

1227224 .. 1229108

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCAACAGTCGAGCAGCAGCAACAGCCACAACCGGAGGAGGCCTCAAAGGAAGCCATGGCCACGGTGGCCGAGAACGCACCGATCACAGCGGAGAGGAAGGTCCGCAATGACTTGGAGACCAAACTCCCAAAGCCTTACTTGCCTCGAGCTATGGTTGCACCTGATATGGAGAACATCAATGGCACCTGGGCTCATAAACATCAAAATATGTCTGTGCTTCAACAGCATGCAGCTTTTTTTGACCAAGACAATGATGGTATCATCTTCCCTTCCGAGACATTCAGAGGGTTTCGTCAACTTGGGTTTAATGCAGTTGCTTCTTTTATTTTCATGGTTCTTGTTCATGGAGCAATGAGTTATGCTACTCTGCCTACATGGATTCCTTCACCCTACTTCGCAATTCACATACGAAACATACACAAGGCAAAGCATGGAAGTGATTCCGGCATTTATGATACGGAAGGAAGGTATATCCCGGCAAACCTTGAGATCATGTTCAGCAAGTATGCTCGCACGGTCCCTGATAAGCTTAGTTTCAAGGAGCTGTGGCACATGACTCAAGCTAACCGTGACGCCTTTGATTTCTTTGGCTGGATTGCAGCCAAACTCGAATGGGGAGTTCTATATGTTCTGGCAAAAGATGAACAAGGTTACTTGGCAAAGGAAGCCGTGAGGCGTTGTTTTGATGGAAGCTTGTTCGAGTACTGTGCTAAGCTGCAAAAGGGTGCTGTGGGTAAGATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

249

Amino Acids

28.3

Weight (kDa)

7.1

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	70 - 237	8.2e-77	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G29560
fragaria_vesca	FvH4_6g01660
malus_domestica	MD04G1231700.v1.1 MD12G1249700.v1.1
prunus_persica	Prupe.6G351100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449461
rosa_laevigata	RLG00000025829
rosa_multiflora	Rmu_sc0000430.1_g000025 Rmu_sc0005902.1_g000001 Rmu_sc0019012.1_g000005
rosa_roxburghii	Rroxscaffold_6G00427410
rosa_rugosa	Rorug02G0620800 Rorug02G0620900 Rorug02G0621000
rosa_samantha	Rh3AG018600 Rh3BG019000 Rh3CG017900 Rh3DG019200
rosa_wichuraiana	Rw3G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	2 cut(s)	92, 106
AcoI	YGGCCR	2 cut(s)	60, 69
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	707
AgsI	TTSAA	2 cut(s)	224, 541
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	7 cut(s)	152, 236, 532, 547, 566, 696, 718
AluI	AGCT	7 cut(s)	152, 236, 532, 547, 566, 696, 718
Alw26I	GTCTC	2 cut(s)	113, 272
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	3 cut(s)	42, 60, 69
ApeKI	GCWGC	5 cut(s)	16, 19, 233, 602, 718
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	2 cut(s)	103, 520
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	103, 520
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	28, 31, 245, 614, 705
BccI	CCATC	2 cut(s)	251, 683
BceAI	ACGGC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	113, 272
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	5 cut(s)	17, 20, 234, 603, 719
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	5 cut(s)	18, 21, 235, 604, 720
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	2 cut(s)	190, 479
Bme18I	GGWCC	2 cut(s)	103, 520
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	103, 520
BmiI	GGNNCC	2 cut(s)	187, 522
BmrFI	CCNGG	2 cut(s)	190, 479
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	509, 546
BpuMI	CCSGG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	57, 63, 189
BsaWI	WCCGGW	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	115, 360
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	57, 63, 189
BseMI	GCAATG	2 cut(s)	115, 360
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	28, 31, 245, 614, 705
BshFI	GGCC	3 cut(s)	44, 62, 71
BshNI	GGYRCC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	35, 447, 479
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	113, 272
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	44, 62, 71
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	84, 492
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	92, 106
BspANI	GGCC	3 cut(s)	44, 62, 71
BspLI	GGNNCC	2 cut(s)	187, 522
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	115, 360
BssECI	CCNNGG	3 cut(s)	57, 63, 189
BssMI	GATC	2 cut(s)	84, 492
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	5 cut(s)	10, 67, 520, 572, 710
BstACI	GRCGYC	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	231, 514
BstDEI	CTNAG	2 cut(s)	533, 714
BstDSI	CCRYGG	2 cut(s)	57, 63
BstKTI	GATC	2 cut(s)	87, 495
BstMAI	GTCTC	2 cut(s)	113, 272
BstMBI	GATC	2 cut(s)	84, 492
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 68, 77, 142, 158, 226, 668
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	188, 477
BstV1I	GCAGC	5 cut(s)	28, 31, 245, 614, 705
BsuRI	GGCC	3 cut(s)	44, 62, 71
BtgI	CCRYGG	2 cut(s)	57, 63
Cac8I	GCNNGC	2 cut(s)	231, 514
Cfr13I	GGNCC	2 cut(s)	103, 520
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	706
CviAII	CATG	8 cut(s)	58, 230, 334, 347, 378, 434, 496, 556
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	2 cut(s)	533, 714
DpnI	GATC	2 cut(s)	86, 494
DpnII	GATC	2 cut(s)	84, 492
EaeI	YGGCCR	2 cut(s)	60, 69
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	103, 520
Eco88I	CYCGRG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	8 cut(s)	57, 229, 333, 346, 377, 433, 495, 555
Fnu4HI	GCNGC	5 cut(s)	17, 20, 234, 603, 719
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	5 cut(s)	17, 20, 234, 603, 719
GluI	GCNGC	5 cut(s)	17, 20, 234, 603, 719
HaeIII	GGCC	3 cut(s)	44, 62, 71
HapII	CCGG	3 cut(s)	35, 447, 479
HgaI	GACGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HindIII	AAGCTT	2 cut(s)	530, 694
HinfI	GANTC	3 cut(s)	382, 443, 559
HpaII	CCGG	3 cut(s)	35, 447, 479
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	277, 287
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	5 cut(s)	94, 282, 396, 458, 462
HpyCH4III	ACNGT	5 cut(s)	10, 67, 520, 572, 710
HpyCH4V	TGCA	5 cut(s)	161, 233, 314, 602, 721
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 68, 77, 142, 158, 226, 668
HpyF3I	CTNAG	2 cut(s)	533, 714
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
Kzo9I	GATC	2 cut(s)	84, 492
LmnI	GCTCC	2 cut(s)	350, 544
LpnPI	CCDG	9 cut(s)	48, 175, 177, 202, 460, 492, 537, 580, 620
Lsp1109I	GCAGC	5 cut(s)	28, 31, 245, 614, 705
MaeIII	GTNAC	2 cut(s)	572, 653
MalI	GATC	2 cut(s)	86, 494
MboI	GATC	2 cut(s)	84, 492
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	7 cut(s)	31, 34, 55, 90, 156, 281, 669
Mox20I	TGGCCA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	35, 447, 479
MspR9I	CCNGG	2 cut(s)	190, 479
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	7 cut(s)	25, 68, 77, 142, 158, 226, 668
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	84, 492
NlaIII	CATG	8 cut(s)	61, 233, 337, 350, 381, 437, 499, 559
NlaIV	GGNNCC	2 cut(s)	187, 522
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	572
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	382, 443
PkrI	GCNGC	5 cut(s)	18, 21, 235, 604, 720
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	187, 522
PspPI	GGNCC	2 cut(s)	103, 520
PspXI	VCTCGAGB	1 cut(s)	147
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	5 cut(s)	17, 20, 234, 603, 719
Sau3AI	GATC	2 cut(s)	84, 492
Sau96I	GGNCC	2 cut(s)	103, 520
ScaI	AGTACT	1 cut(s)	707
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	2 cut(s)	190, 479
SduI	GDGCHC	1 cut(s)	196
SfiI	GGCCNNNNNGGCC	1 cut(s)	68
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	103, 520
SlaI	CTCGAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	3 cut(s)	147, 488, 561
SmoI	CTYRAG	3 cut(s)	147, 488, 561
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	1 cut(s)	402
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	92, 106
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	188, 477
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	5 cut(s)	10, 67, 520, 572, 710
TaqI	TCGA	4 cut(s)	12, 148, 612, 702
TasI	AATT	1 cut(s)	402
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	382, 443
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	5 cut(s)	16, 19, 233, 602, 718
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	322, 335, 660
TspGWI	ACGGA	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	103, 520
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 254
XhoI	CTCGAG	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.