FvH4_6g01660

Caleosin related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011702
Physical Location & Seq
Reverse (-)
947571 .. 949629
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01660.t1

Sequence Viewer

Length: 753 bp
ATGGCGTCAGTCGAGAAGCAGCAGCAACAGCCACAACCGGAGGAGGTGTCGAAGGATGCCATGGCCACGGTGGCCGAGTATGCTCCGGTCACCGCGGAAAGGAAGGTCCGCAGTGACTTGGAGACCAAGCTCCCAAAGCCTTACATGCCTCGAGCTATGGTTGCACCTGATATGGAGAACATCAATGGCACCTGGGGTCATAAACATCAGAATATGTCTGTGCTTCAACAGCATGTAGCTTTCTTCGACCAGGACAATGATGGTATCATCTTCCCTTCCGAGACGTTCAGAGGGTTTCGTGCACTTGGGTTTAATCCGATTGCTTCTTTCATCTTCATGATTCTTGTTCATGGAGCAATGAGTTATGCTACTTTGCCTACATGGATACCTTCACCCTACTTCGCGATTCACATTAAAAACATACATAAGGCTAAGCATGGAAGTGATTCTGGGATTTATGATACAGAGGGAAGGTATATCCCGGCACACCTTGAGAACATGTTCAGCAAGTATGCTCGAACAGTCCCTGATAAGCTTAGTTTCAAGGAGCTATGGCACATGACTCAGGCTAGCCGTAACGCCTTTGATTTCTTCGGCTGGGTTGCAGCCAAACTGGAATGGGGAGTTCTATATGTTCTGGCAAAAGATGATCAAGGTTACTTGGCAAAGGAAGCTGTGAGGCGTTGTTTTGATGGAAGCTTGTTCGAATACTGTGCTAAGCTGCAAAAGGGTGCTGTGGGTAAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Caleosin

Protein Analysis

251

Amino Acids

28.41

Weight (kDa)

8.38

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 71 - 238 3e-77 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 2 cut(s) 95, 404
AciI CCGC 3 cut(s) 93, 95, 109
AcoI YGGCCR 2 cut(s) 63, 72
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 2 cut(s) 227, 544
AjnI CCWGG 2 cut(s) 191, 249
AluBI AGCT 8 cut(s) 130, 155, 239, 535, 550, 674, 699, 721
AluI AGCT 8 cut(s) 130, 155, 239, 535, 550, 674, 699, 721
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 116, 275
Alw44I GTGCAC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 2 cut(s) 63, 72
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 4 cut(s) 19, 22, 605, 721
Asp700I GAANNNNTTC 2 cut(s) 445, 500
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 82, 384
AsuII TTCGAA 1 cut(s) 705
AsuNHI GCTAGC 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 4 cut(s) 31, 34, 617, 708
BccI CCATC 2 cut(s) 254, 686
BceAI ACGGC 1 cut(s) 558
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 2 cut(s) 193, 251
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 2 cut(s) 116, 275
BfaI CTAG 1 cut(s) 570
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 4 cut(s) 20, 23, 606, 722
BlpI GCTNAGC 2 cut(s) 432, 717
BlsI GCNGC 4 cut(s) 21, 24, 607, 723
Bme1390I CCNGG 3 cut(s) 193, 251, 482
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 193, 251, 482
BmsI GCATC 1 cut(s) 46
BmtI GCTAGC 1 cut(s) 573
Bpu1102I GCTNAGC 2 cut(s) 432, 717
Bpu14I TTCGAA 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 60, 66, 93, 192
BsaWI WCCGGW 2 cut(s) 37, 85
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 193, 251
BseDI CCNNGG 4 cut(s) 60, 66, 93, 192
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 4 cut(s) 31, 34, 617, 708
BseYI CCCAGC 1 cut(s) 597
Bsh1236I CGCG 2 cut(s) 95, 404
BshFI GGCC 2 cut(s) 65, 74
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 38, 86, 482
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 2 cut(s) 116, 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 2 cut(s) 65, 74
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 649
Bsp1720I GCTNAGC 2 cut(s) 432, 717
Bsp19I CCATGG 1 cut(s) 60
Bsp68I TCGCGA 1 cut(s) 404
BspACI CCGC 3 cut(s) 93, 95, 109
BspANI GGCC 2 cut(s) 65, 74
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 2 cut(s) 95, 404
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 573
BspT104I TTCGAA 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 618
BssECI CCNNGG 4 cut(s) 60, 66, 93, 192
BssMI GATC 1 cut(s) 649
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 193, 251
Bst4CI ACNGT 3 cut(s) 70, 523, 713
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 4 cut(s) 432, 536, 564, 717
BstDSI CCRYGG 3 cut(s) 60, 66, 93
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 2 cut(s) 95, 404
BstKTI GATC 1 cut(s) 652
BstMAI GTCTC 2 cut(s) 116, 275
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 8 cut(s) 28, 71, 80, 136, 145, 161, 229, 671
BstNI CCWGG 2 cut(s) 193, 251
BstNSI RCATGY 3 cut(s) 148, 236, 502
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 191, 249, 480
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 2 cut(s) 95, 404
BstV1I GCAGC 4 cut(s) 31, 34, 617, 708
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 65, 74
BtgI CCRYGG 3 cut(s) 60, 66, 93
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
BtuMI TCGCGA 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 571
CaiI CAGNNNCTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 106
Cfr42I CCGCGG 1 cut(s) 96
CviAII CATG 9 cut(s) 61, 145, 233, 337, 350, 381, 437, 499, 559
DdeI CTNAG 4 cut(s) 432, 536, 564, 717
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
EaeI YGGCCR 2 cut(s) 63, 72
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 191, 249
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 9 cut(s) 64, 148, 236, 340, 353, 384, 440, 502, 562
FaqI GGGAC 1 cut(s) 509
FatI CATG 9 cut(s) 60, 144, 232, 336, 349, 380, 436, 498, 558
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 4 cut(s) 20, 23, 606, 722
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 4 cut(s) 20, 23, 606, 722
FspBI CTAG 1 cut(s) 570
GluI GCNGC 4 cut(s) 20, 23, 606, 722
GsaI CCCAGC 1 cut(s) 601
HaeIII GGCC 2 cut(s) 65, 74
HapII CCGG 3 cut(s) 38, 86, 482
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 9 cut(s) 64, 148, 236, 340, 353, 384, 440, 502, 562
HindIII AAGCTT 2 cut(s) 533, 697
HinfI GANTC 4 cut(s) 340, 406, 446, 562
HpaII CCGG 3 cut(s) 38, 86, 482
HphI GGTGA 2 cut(s) 82, 384
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 4 cut(s) 210, 280, 290, 318
Hpy188III TCNNGA 3 cut(s) 13, 337, 403
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 5 cut(s) 46, 97, 285, 399, 465
HpyCH4III ACNGT 3 cut(s) 70, 523, 713
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 164, 302, 605, 724
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 71, 80, 136, 145, 161, 229, 671
HpyF3I CTNAG 4 cut(s) 432, 536, 564, 717
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 9 cut(s) 64, 148, 236, 340, 353, 384, 440, 502, 562
Ksp22I TGATCA 1 cut(s) 649
KspI CCGCGG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 4 cut(s) 88, 135, 353, 547
Lsp1109I GCAGC 4 cut(s) 31, 34, 617, 708
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 570
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 4 cut(s) 88, 113, 575, 656
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 4 cut(s) 235, 262, 325, 583
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 6 cut(s) 34, 37, 159, 284, 460, 672
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 2 cut(s) 445, 500
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 312, 414
MslI CAYNNNNRTG 2 cut(s) 335, 441
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 38, 86, 482
MspR9I CCNGG 3 cut(s) 193, 251, 482
MvaI CCWGG 2 cut(s) 193, 251
MvnI CGCG 2 cut(s) 95, 404
MwoI GCNNNNNNNGC 8 cut(s) 28, 71, 80, 136, 145, 161, 229, 671
NciI CCSGG 1 cut(s) 482
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 649
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 9 cut(s) 64, 148, 236, 340, 353, 384, 440, 502, 562
NlaIV GGNNCC 1 cut(s) 190
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 88, 113
NruI TCGCGA 1 cut(s) 404
NspI RCATGY 3 cut(s) 148, 236, 502
NspV TTCGAA 1 cut(s) 705
PaeR7I CTCGAG 1 cut(s) 150
PagI TCATGA 1 cut(s) 336
PciI ACATGT 1 cut(s) 498
PdmI GAANNNNTTC 2 cut(s) 445, 500
PfeI GAWTC 3 cut(s) 340, 406, 446
PkrI GCNGC 4 cut(s) 21, 24, 607, 723
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PscI ACATGT 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 191, 249
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 597
PspGI CCWGG 2 cut(s) 191, 249
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 106
PspXI VCTCGAGB 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 527
RruI TCGCGA 1 cut(s) 404
RseI CAYNNNNRTG 2 cut(s) 335, 441
SacII CCGCGG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 312, 414
SatI GCNGC 4 cut(s) 20, 23, 606, 722
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 193, 251, 482
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 1 cut(s) 46
SfiI GGCCNNNNNGGCC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 150
Sfr303I CCGCGG 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 705
SgrBI CCGCGG 1 cut(s) 96
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 335, 441
SmlI CTYRAG 2 cut(s) 150, 491
SmoI CTYRAG 2 cut(s) 150, 491
SsiI CCGC 3 cut(s) 93, 95, 109
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 3 cut(s) 191, 249, 480
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 70, 523, 713
TaiI ACGT 1 cut(s) 287
TaqI TCGA 6 cut(s) 12, 50, 151, 246, 517, 705
TfiI GAWTC 3 cut(s) 340, 406, 446
Tru1I TTAA 2 cut(s) 312, 414
Tru9I TTAA 2 cut(s) 312, 414
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 2 cut(s) 88, 113
TseI GCWGC 4 cut(s) 19, 22, 605, 721
Tsp45I GTSAC 2 cut(s) 88, 113
TspDTI ATGAA 3 cut(s) 319, 325, 338
TspRI CASTG 1 cut(s) 118
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 106
XceI RCATGY 3 cut(s) 148, 236, 502
XcmI CCANNNNNNNNNTGG 2 cut(s) 67, 257
XhoI CTCGAG 1 cut(s) 150
XmnI GAANNNNTTC 2 cut(s) 445, 500
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.