Rh3DG019200

Caleosin related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011702
Physical Location & Seq
Reverse (-)
1215254 .. 1217859
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG019200.1

Sequence Viewer

Length: 621 bp
ATGATTTTAGACTTGCCTCGAGCTATGGTTGCACCTGATATGGAGAACATCAATGGCACCTGGGCTCATAAACATCAAAATATGTCTGTGCTTCAACAGCATGCAGCTTTTTTTGACCAAGACAATGATGGTATCATCTTCCCTTCCGAGACATTCAGAGGGTTTCGTCAACTTGGGTTTAATGCAGTTGCTTCTTTTATTTTCATGGTTCTTGTTCATGGAGCAATGAGTTATGCTACTCTGCCTACATGGATTCCTTCACCCTACTTCGCAATTCACATACGAAACATACACAAGGCAAAGCATGGAAGTGATTCCGGCATTTATGATACGGAAGGAAGGTATATCCCGGCAAACCTTGAGATCATGTTCAGCAAGTATGCTCGCACGGTCCCTGATAAGCTTAGTTTCAAGGAGCTGTGGCACATGACTCAAGCTAATCGTGACGCCTTTGATTTCTTTGGCTGGATTGCAGCCAAACTCGAATGGGGAGTTCTATATGTTCTGGCAAAAGATGAACAAGGTTACTTGGCAAAGGAAGCCGTGAGGCGTTGTTTTGATGGAAGCTTGTTCGAGTACTGTGCTAAGCTGCAAAAGGGTGCTGTGGGTAAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Caleosin

Protein Analysis

206

Amino Acids

23.52

Weight (kDa)

7.81

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 27 - 194 4.4e-77 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 1 cut(s) 578
AgsI TTSAA 2 cut(s) 95, 412
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 7 cut(s) 23, 107, 403, 418, 437, 567, 589
AluI AGCT 7 cut(s) 23, 107, 403, 418, 437, 567, 589
Alw26I GTCTC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 104, 473, 589
Asp700I GAANNNNTTC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 116, 485, 576
BccI CCATC 2 cut(s) 122, 554
BceAI ACGGC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 3 cut(s) 105, 474, 590
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 3 cut(s) 106, 475, 591
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 2 cut(s) 61, 350
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 58, 393
BmrFI CCNGG 2 cut(s) 61, 350
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 380, 417
BpuMI CCSGG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 116, 485, 576
BshNI GGYRCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 2 cut(s) 318, 350
BslFI GGGAC 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 363
Bsp1720I GCTNAGC 1 cut(s) 585
BspLI GGNNCC 2 cut(s) 58, 393
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 363
BssNI GRCGYC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 391, 581
BstACI GRCGYC 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 102, 385
BstDEI CTNAG 2 cut(s) 404, 585
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 3 cut(s) 29, 97, 539
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 59, 348
BstV1I GCAGC 3 cut(s) 116, 485, 576
Cac8I GCNNGC 2 cut(s) 102, 385
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 577
CviAII CATG 7 cut(s) 101, 205, 218, 249, 305, 367, 427
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 404, 585
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 7 cut(s) 104, 208, 221, 252, 308, 370, 430
FaqI GGGAC 1 cut(s) 377
FatI CATG 7 cut(s) 100, 204, 217, 248, 304, 366, 426
Fnu4HI GCNGC 3 cut(s) 105, 474, 590
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 3 cut(s) 105, 474, 590
GluI GCNGC 3 cut(s) 105, 474, 590
HapII CCGG 2 cut(s) 318, 350
HgaI GACGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 7 cut(s) 104, 208, 221, 252, 308, 370, 430
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 2 cut(s) 401, 565
HinfI GANTC 3 cut(s) 253, 314, 430
HpaII CCGG 2 cut(s) 318, 350
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 148, 158
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 153, 267, 329, 333
HpyCH4III ACNGT 2 cut(s) 391, 581
HpyCH4V TGCA 5 cut(s) 32, 104, 185, 473, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 97, 539
HpyF3I CTNAG 2 cut(s) 404, 585
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 7 cut(s) 104, 208, 221, 252, 308, 370, 430
Kzo9I GATC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 221, 415
LpnPI CCDG 8 cut(s) 46, 48, 73, 331, 363, 408, 451, 491
Lsp1109I GCAGC 3 cut(s) 116, 485, 576
MaeIII GTNAC 2 cut(s) 443, 524
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 1 cut(s) 273
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 3 cut(s) 27, 152, 540
MroXI GAANNNNTTC 1 cut(s) 313
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 2 cut(s) 318, 350
MspR9I CCNGG 2 cut(s) 61, 350
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 29, 97, 539
NciI CCSGG 1 cut(s) 350
NdeII GATC 1 cut(s) 363
NlaIII CATG 7 cut(s) 104, 208, 221, 252, 308, 370, 430
NlaIV GGNNCC 2 cut(s) 58, 393
NmuCI GTSAC 1 cut(s) 443
NspI RCATGY 1 cut(s) 104
PaeI GCATGC 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 253, 314
PkrI GCNGC 3 cut(s) 106, 475, 591
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 58, 393
PspPI GGNCC 1 cut(s) 391
PspXI VCTCGAGB 1 cut(s) 18
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 105, 474, 590
Sau3AI GATC 1 cut(s) 363
Sau96I GGNCC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 578
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 61, 350
SduI GDGCHC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 391
SlaI CTCGAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 3 cut(s) 18, 359, 432
SmoI CTYRAG 3 cut(s) 18, 359, 432
SphI GCATGC 1 cut(s) 104
Sse9I AATT 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 59, 348
TaaI ACNGT 2 cut(s) 391, 581
TaqI TCGA 3 cut(s) 19, 483, 573
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 2 cut(s) 253, 314
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 3 cut(s) 104, 473, 589
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 193, 206, 531
TspGWI ACGGA 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 391
XceI RCATGY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.