Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011702

Physical Location & Seq

Genomic Coordinates Forward (+)

29927722 .. 29929731

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G351100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGACTGAGCAACAGGTATCGAACGAAGCCATGGCAACGGTGGCTGAGAAGGCACCAATCACCGTGGAGAGGAAGGTCCGCAATGATCTGGAGACCAAGCTCCCCAAGCCTTACATGCCTAGAGCTATGACTGCTCCTGATACGGAGAACATCAATGGCACATGGGGACATAAGCATTGTAATATGTCTGTGCTTCAGCAGCATGCAGCTTTTTTCGACCAAGACAAGGATGGTATCATCTACCCTTCCGAGACATATAGAGGATTTCGTGCACTCGGGTTTAATGTCGTTGCTTCTTTCATTTTCATGGTTCTTGTCCATGCAGCAATGAGTTATGCAACTCTGCCTACATGGATGCCTTCACCTTACTTTGCAATACACATCGAAAACATACACCGGGCAAAGCATGGAAGTGACTCAGGGGCCTATGACACAGAGGGAAGGTATATTCCGGCAAATCTTGAGAACTTGTTCAGCAAGTACGCCTGTACCGTGCCTGATAAGCTCACCTTCAAGGAGCTTTGGCACATGACTCAAGCTAACCGTGACGCCTTTGATTTCTTTGGCTGGATTGCAAGTAAACTGGAATGGGGAGTTCTGTATGTTCTTGCAAAAGATGAACATGGCCACTTGGCAAAGGAAGCCGTGAGACGCTGTTTCGATGGAAGCTTGTTCGAATACTGTGCCAAGTCGCAGAAGGGTGCTGCTGGTAAACTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

242

Amino Acids

27.24

Weight (kDa)

6.55

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G29560
fragaria_vesca	FvH4_6g01660
malus_domestica	MD04G1231700.v1.1 MD12G1249700.v1.1
prunus_persica	Prupe.6G351100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449461
rosa_laevigata	RLG00000025829
rosa_multiflora	Rmu_sc0000430.1_g000025 Rmu_sc0005902.1_g000001 Rmu_sc0019012.1_g000005
rosa_roxburghii	Rroxscaffold_6G00427410
rosa_rugosa	Rorug02G0620800 Rorug02G0620900 Rorug02G0621000
rosa_samantha	Rh3AG018600 Rh3BG019000 Rh3CG017900 Rh3DG019200
rosa_wichuraiana	Rw3G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	2 cut(s)	485, 493
AfiI	CCNNNNNNNGG	2 cut(s)	72, 229
AgsI	TTSAA	1 cut(s)	517
AluBI	AGCT	7 cut(s)	103, 128, 212, 508, 523, 542, 672
AluI	AGCT	7 cut(s)	103, 128, 212, 508, 523, 542, 672
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	3 cut(s)	89, 248, 646
Alw44I	GTGCAC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	426, 628
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	202, 209, 326, 707
Asp700I	GAANNNNTTC	1 cut(s)	473
AspS9I	GGNCC	2 cut(s)	79, 426
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	55, 357, 502
AsuII	TTCGAA	1 cut(s)	678
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	475, 508
BalI	TGGCCA	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	214, 221, 338, 694
BccI	CCATC	2 cut(s)	227, 659
BceAI	ACGGC	1 cut(s)	632
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	3 cut(s)	89, 248, 646
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	4 cut(s)	203, 210, 327, 708
BlsI	GCNGC	4 cut(s)	204, 211, 328, 709
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	79, 426
BmiI	GGNNCC	2 cut(s)	57, 427
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	485, 522
BpuMI	CCSGG	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	33, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 229
Bse1I	ACTGG	2 cut(s)	591, 723
Bse3DI	GCAATG	2 cut(s)	91, 336
BseDI	CCNNGG	2 cut(s)	33, 66
BseGI	GGATG	2 cut(s)	238, 363
BseLI	CCNNNNNNNGG	2 cut(s)	72, 229
BseMI	GCAATG	2 cut(s)	91, 336
BseMII	CTCAG	2 cut(s)	39, 435
BseNI	ACTGG	2 cut(s)	591, 723
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	214, 221, 338, 694
BshFI	GGCC	2 cut(s)	428, 630
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	400, 455
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	72, 229
BsmAI	GTCTC	3 cut(s)	89, 248, 646
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	428, 630
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	428, 630
BspCNI	CTCAG	2 cut(s)	40, 434
BspLI	GGNNCC	2 cut(s)	57, 427
BspT104I	TTCGAA	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	91, 336
BsrI	ACTGG	2 cut(s)	591, 723
BssECI	CCNNGG	2 cut(s)	33, 66
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	43, 67, 496, 548, 686
BstACI	GRCGYC	1 cut(s)	552
BstBI	TTCGAA	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	9, 48, 421
BstDSI	CCRYGG	2 cut(s)	33, 66
BstF5I	GGATG	2 cut(s)	238, 363
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	3 cut(s)	89, 248, 646
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 53, 109, 118, 134, 202, 505, 644
BstNSI	RCATGY	2 cut(s)	121, 209
BstSCI	CCNGG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	214, 221, 338, 694
BsuRI	GGCC	2 cut(s)	428, 630
BtgI	CCRYGG	2 cut(s)	33, 66
BtsCI	GGATG	2 cut(s)	238, 363
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	79, 426
CseI	GACGC	2 cut(s)	560, 663
Csp6I	GTAC	2 cut(s)	484, 492
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviQI	GTAC	2 cut(s)	484, 492
DdeI	CTNAG	3 cut(s)	9, 48, 421
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	646
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	203, 210, 327, 708
FokI	GGATG	2 cut(s)	245, 370
Fsp4HI	GCNGC	4 cut(s)	203, 210, 327, 708
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	4 cut(s)	203, 210, 327, 708
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	428, 630
HapII	CCGG	2 cut(s)	400, 455
HgaI	GACGC	2 cut(s)	560, 663
Hin1I	GRCGYC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	2 cut(s)	419, 535
HpaII	CCGG	2 cut(s)	400, 455
HphI	GGTGA	3 cut(s)	55, 357, 502
Hpy166II	GTNNAC	3 cut(s)	275, 584, 716
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	92, 140, 464
Hpy8I	GTNNAC	3 cut(s)	275, 584, 716
HpyAV	CCTTC	7 cut(s)	46, 70, 258, 372, 438, 523, 694
HpyCH4III	ACNGT	5 cut(s)	43, 67, 496, 548, 686
HpyCH4V	TGCA	7 cut(s)	209, 275, 326, 341, 377, 578, 614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 53, 109, 118, 134, 202, 505, 644
HpyF3I	CTNAG	3 cut(s)	9, 48, 421
Hsp92I	GRCGYC	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	108, 142, 520
Lsp1109I	GCAGC	4 cut(s)	214, 221, 338, 694
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	416, 548
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	630
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	2 cut(s)	413, 529
MnlI	CCTC	3 cut(s)	66, 257, 433
Mox20I	TGGCCA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	308, 414
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	2 cut(s)	400, 455
MspR9I	CCNGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	8 cut(s)	44, 53, 109, 118, 134, 202, 505, 644
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	57, 427
NmuCI	GTSAC	2 cut(s)	416, 548
NspI	RCATGY	2 cut(s)	121, 209
NspV	TTCGAA	1 cut(s)	678
PaeI	GCATGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	204, 211, 328, 709
PleI	GAGTC	2 cut(s)	413, 529
PpsI	GAGTC	2 cut(s)	413, 529
PspN4I	GGNNCC	2 cut(s)	57, 427
PspPI	GGNCC	2 cut(s)	79, 426
RsaI	GTAC	2 cut(s)	485, 493
RsaNI	GTAC	2 cut(s)	484, 492
RseI	CAYNNNNRTG	2 cut(s)	308, 414
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	203, 210, 327, 708
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	79, 426
SchI	GAGTC	2 cut(s)	413, 529
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	348
SfuI	TTCGAA	1 cut(s)	678
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	308, 414
SmlI	CTYRAG	2 cut(s)	464, 537
SmoI	CTYRAG	2 cut(s)	464, 537
SphI	GCATGC	1 cut(s)	209
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	43, 67, 496, 548, 686
TaqI	TCGA	5 cut(s)	23, 219, 387, 663, 678
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	416, 548
TseI	GCWGC	4 cut(s)	202, 209, 326, 707
Tsp45I	GTSAC	2 cut(s)	416, 548
TspDTI	ATGAA	3 cut(s)	292, 298, 636
TspGWI	ACGGA	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	79
XceI	RCATGY	2 cut(s)	121, 209
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 230
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.