Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011702

Physical Location & Seq

Genomic Coordinates Forward (+)

73803188 .. 73804247

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0621000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTTACTAATACACTGGTGTGGCACCATGTCCAAAATAATACGATTTCTCGAATTATCGATAAGAGTATGAAGATTGAAGACACTGAAGAAATTAAAAGAGTTGTTCAGGTGGGTTTGTTGTGCACTCAAGAATCACCAGAGTTACGTCCCACCATGACATCAGTAATTCGAATGCTTATACGAAGAGACTTGGCATTGCCAGCGCCATCAAAGCCACCTTTCCTTGATATTTCACTCCCAAAGGCTGGCAAAATCATAATTGAGAAGGTCCCCAATTATCTAACCCAAGTACCAGATATAGTCAAAGGAGTAGGGGATGGCCCATTGGTAACATGGAACAACACCAAATTTCACAAAAGGGCTGCCCCACTCTTGGCCAATTCCGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

9.41

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G29560
fragaria_vesca	FvH4_6g01660
malus_domestica	MD04G1231700.v1.1 MD12G1249700.v1.1
prunus_persica	Prupe.6G351100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449461
rosa_laevigata	RLG00000025829
rosa_multiflora	Rmu_sc0000430.1_g000025 Rmu_sc0005902.1_g000001 Rmu_sc0019012.1_g000005
rosa_roxburghii	Rroxscaffold_6G00427410
rosa_rugosa	Rorug02G0620800 Rorug02G0620900 Rorug02G0621000
rosa_samantha	Rh3AG018600 Rh3BG019000 Rh3CG017900 Rh3DG019200
rosa_wichuraiana	Rw3G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	248, 376
AgsI	TTSAA	1 cut(s)	80
AleI	CACNNNNGTG	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	183
Alw44I	GTGCAC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	322, 378
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	271, 323
AsuHPI	GGTGA	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	217, 314
BcoDI	GTCTC	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	209
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	271, 323
BmiI	GGNNCC	2 cut(s)	26, 273
BpiI	GAAGAC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 376
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	248, 376
BseMI	GCAATG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	324, 380
BshNI	GGYRCC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	128
BslFI	GGGAC	2 cut(s)	135, 257
BslI	CCNNNNNNNGG	2 cut(s)	248, 376
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	135, 257
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	324, 380
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	324, 380
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	26, 273
BspT104I	TTCGAA	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	204, 250
BstF5I	GGATG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 214
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	324, 380
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	14, 84
Cac8I	GCNNGC	2 cut(s)	204, 250
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	271, 323
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	29, 157, 336
CviJI	RGCY	5 cut(s)	217, 248, 324, 365, 380
CviKI_1	RGCY	5 cut(s)	217, 248, 324, 365, 380
CviQI	GTAC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	271
FaeI	CATG	3 cut(s)	32, 160, 339
FaiI	YATR	7 cut(s)	30, 71, 158, 182, 260, 302, 337
FaqI	GGGAC	2 cut(s)	135, 257
FatI	CATG	3 cut(s)	28, 156, 335
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	366
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	324, 380
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	32, 160, 339
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	6, 126
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	51, 131
Hpy8I	GTNNAC	2 cut(s)	6, 126
HpyAV	CCTTC	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 214
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	32, 160, 339
HspAI	GCGC	1 cut(s)	206
LpnPI	CCDG	6 cut(s)	2, 95, 153, 216, 234, 309
Lsp1109I	GCAGC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	144, 331
MboII	GAAGA	4 cut(s)	85, 92, 101, 198
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	7 cut(s)	54, 93, 168, 261, 277, 350, 382
MluNI	TGGCCA	1 cut(s)	380
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	19
Msp20I	TGGCCA	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	203, 214
NlaIII	CATG	3 cut(s)	32, 160, 339
NlaIV	GGNNCC	2 cut(s)	26, 273
NspV	TTCGAA	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	19
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	26, 273
PspPI	GGNCC	2 cut(s)	271, 323
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	366
Sau96I	GGNCC	2 cut(s)	271, 323
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	4 cut(s)	114, 151, 223, 273
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	7 cut(s)	54, 93, 168, 261, 277, 350, 382
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	52, 60, 172
TasI	AATT	7 cut(s)	54, 93, 168, 261, 277, 350, 382
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	21, 91
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	21, 91
Van91I	CCANNNNNTGG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.