RLG00000025829

Caleosin related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011702
Physical Location & Seq
Forward (+)
48553710 .. 48555562
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025829

Sequence Viewer

Length: 669 bp
ATGGCAACAGTCGAGCAGCAGCAACAGCCACAACCGGAGGAGGCCTCAAAGGAAGCCATGGCCACGGTGGCCGAGAACGCACCGATCACAGCGGAGAGGAAGGTCCGCAATGACTTGGAGACCAAACTCCCAAAGCCTTACTTGCCTCGAGCTATGGTTGCATCTGATATGGAGAACATCAATGGCACCTGGGCTCATAAACATCAAAATATGTCTGTGCTTCAGCAGCATGCAGCTTTTTTTGACCAAGACAATGATGGTATCATCTTCCCTTCCGAGACATTCAGAGGGTTTCGTCAACTTGGGTTTAATGCAGTTGCTTCTTTTATTTTCATGATTCTTGTTCATGGAGCAATGAGTTATGCTACTCTGCCTACATGGATTCCTTCACCCTACTTCGGAATTCACATACGAAACATACACAAGGCAAAGCACGGAAGTGATTCCGGGATTTATGATACGGAAGGAAGGTATATCCCGGCAAACCTTGAGATCATGTTCAGCAAGTATGCTCGCACGGTCCCTGATAAGCTTAGTTTCAAGGAGCTGTGGCACATGACTCAAGCTAACCGTGACGCCTTTGATTTCTTTGGCTGTTCATTTCAGCTTGTTAGACTGATAAGTGACAGTAGAAAAAGCTATAATAATCCGACTTCTGGTGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Caleosin

Protein Analysis

223

Amino Acids

25.11

Weight (kDa)

6.71

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 70 - 204 4.3e-57 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 2 cut(s) 92, 106
AcoI YGGCCR 2 cut(s) 60, 69
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 576
AfiI CCNNNNNNNGG 2 cut(s) 398, 656
AgsI TTSAA 1 cut(s) 541
AjnI CCWGG 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 7 cut(s) 152, 236, 532, 547, 566, 607, 639
AluI AGCT 7 cut(s) 152, 236, 532, 547, 566, 607, 639
Alw26I GTCTC 2 cut(s) 113, 272
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 3 cut(s) 42, 60, 69
ApeKI GCWGC 4 cut(s) 16, 19, 226, 233
ApoI RAATTY 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 103, 520
AsuC2I CCSGG 2 cut(s) 448, 479
AsuHPI GGTGA 1 cut(s) 381
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 103, 520
BalI TGGCCA 1 cut(s) 62
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 196
BbvI GCAGC 4 cut(s) 28, 31, 238, 245
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 2 cut(s) 448, 479
BcoDI GTCTC 2 cut(s) 113, 272
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 4 cut(s) 17, 20, 227, 234
BlsI GCNGC 4 cut(s) 18, 21, 228, 235
Bme1390I CCNGG 3 cut(s) 190, 448, 479
Bme18I GGWCC 2 cut(s) 103, 520
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 103, 520
BmiI GGNNCC 2 cut(s) 187, 522
BmrFI CCNGG 3 cut(s) 190, 448, 479
BmsI GCATC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 2 cut(s) 509, 546
BpuMI CCSGG 2 cut(s) 448, 479
BsaHI GRCGYC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 57, 63, 189
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 656
Bse3DI GCAATG 2 cut(s) 115, 360
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 3 cut(s) 57, 63, 189
BseLI CCNNNNNNNGG 2 cut(s) 398, 656
BseMI GCAATG 2 cut(s) 115, 360
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 4 cut(s) 28, 31, 238, 245
BshFI GGCC 3 cut(s) 44, 62, 71
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 35, 447, 479
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 398, 656
BsmAI GTCTC 2 cut(s) 113, 272
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 3 cut(s) 44, 62, 71
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 84, 492
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 92, 106
BspANI GGCC 3 cut(s) 44, 62, 71
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 187, 522
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 115, 360
BssECI CCNNGG 3 cut(s) 57, 63, 189
BssMI GATC 2 cut(s) 84, 492
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 5 cut(s) 10, 67, 520, 572, 629
BstACI GRCGYC 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 231, 514
BstDEI CTNAG 1 cut(s) 533
BstDSI CCRYGG 2 cut(s) 57, 63
BstKTI GATC 2 cut(s) 87, 495
BstMAI GTCTC 2 cut(s) 113, 272
BstMBI GATC 2 cut(s) 84, 492
BstMWI GCNNNNNNNGC 6 cut(s) 25, 68, 77, 142, 158, 226
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 188, 446, 477
BstV1I GCAGC 4 cut(s) 28, 31, 238, 245
BsuRI GGCC 3 cut(s) 44, 62, 71
BtgI CCRYGG 2 cut(s) 57, 63
Cac8I GCNNGC 2 cut(s) 231, 514
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 103, 520
CseI GACGC 1 cut(s) 584
CviAII CATG 7 cut(s) 58, 230, 334, 347, 378, 496, 556
DdeI CTNAG 1 cut(s) 533
DpnI GATC 2 cut(s) 86, 494
DpnII GATC 2 cut(s) 84, 492
EaeI YGGCCR 2 cut(s) 60, 69
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 103, 520
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 506
FatI CATG 7 cut(s) 57, 229, 333, 346, 377, 495, 555
Fnu4HI GCNGC 4 cut(s) 17, 20, 227, 234
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 4 cut(s) 17, 20, 227, 234
GluI GCNGC 4 cut(s) 17, 20, 227, 234
HaeIII GGCC 3 cut(s) 44, 62, 71
HapII CCGG 3 cut(s) 35, 447, 479
HgaI GACGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 4 cut(s) 337, 382, 443, 559
HpaII CCGG 3 cut(s) 35, 447, 479
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 166, 277, 287, 401, 651
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 5 cut(s) 94, 282, 396, 458, 462
HpyCH4III ACNGT 5 cut(s) 10, 67, 520, 572, 629
HpyCH4V TGCA 3 cut(s) 161, 233, 314
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 68, 77, 142, 158, 226
HpyF3I CTNAG 1 cut(s) 533
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
Kzo9I GATC 2 cut(s) 84, 492
LmnI GCTCC 2 cut(s) 350, 544
LpnPI CCDG 8 cut(s) 48, 175, 202, 460, 492, 537, 642, 648
Lsp1109I GCAGC 4 cut(s) 28, 31, 238, 245
LweI GCATC 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 572, 623
MalI GATC 2 cut(s) 86, 494
MboI GATC 2 cut(s) 84, 492
MboII GAAGA 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 553
MnlI CCTC 6 cut(s) 31, 34, 55, 90, 156, 281
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 35, 447, 479
MspR9I CCNGG 3 cut(s) 190, 448, 479
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 6 cut(s) 25, 68, 77, 142, 158, 226
NciI CCSGG 2 cut(s) 448, 479
NcoI CCATGG 1 cut(s) 57
NdeII GATC 2 cut(s) 84, 492
NlaIII CATG 7 cut(s) 61, 233, 337, 350, 381, 499, 559
NlaIV GGNNCC 2 cut(s) 187, 522
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 572, 623
NspI RCATGY 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 438
PaeI GCATGC 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 147
PagI TCATGA 1 cut(s) 333
PceI AGGCCT 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 337, 382, 443
PfoI TCCNGGA 1 cut(s) 446
PkrI GCNGC 4 cut(s) 18, 21, 228, 235
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 187, 522
PspPI GGNCC 2 cut(s) 103, 520
PspXI VCTCGAGB 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 4 cut(s) 17, 20, 227, 234
Sau3AI GATC 2 cut(s) 84, 492
Sau96I GGNCC 2 cut(s) 103, 520
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 3 cut(s) 190, 448, 479
SduI GDGCHC 1 cut(s) 196
SfaNI GCATC 1 cut(s) 170
SfiI GGCCNNNNNGGCC 1 cut(s) 68
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 103, 520
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 3 cut(s) 147, 488, 561
SmoI CTYRAG 3 cut(s) 147, 488, 561
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 402
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 2 cut(s) 92, 106
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 188, 446, 477
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 10, 67, 520, 572, 629
TaqI TCGA 2 cut(s) 12, 148
TasI AATT 1 cut(s) 402
TfiI GAWTC 3 cut(s) 337, 382, 443
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 2 cut(s) 572, 623
TseI GCWGC 4 cut(s) 16, 19, 226, 233
Tsp45I GTSAC 2 cut(s) 572, 623
TspDTI ATGAA 3 cut(s) 322, 335, 588
TspGWI ACGGA 2 cut(s) 450, 476
VpaK11BI GGWCC 2 cut(s) 103, 520
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 254
XhoI CTCGAG 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.