Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011702

Physical Location & Seq

Genomic Coordinates Forward (+)

73785116 .. 73785535

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0620800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGTGTCCCGCACGATTTACACCCGGAAATTCTTCAAAAGTTGTTTGAGGTGGTTGCGGCGGCCGTCTCCGCCGACACTATTGTTGTGGGTGTGTTCGACACCACTCACCTCAGGGGTTTTGATTTTGTTGATGCTGATGGAGATCGAGATGGAGGTGGATATGGATATGAACCTACATCTAGGCTTTCGTGTACGATTTGTTTGGAGGATTTTGCCGCTTTTGTAGATGATCATGAACAAGAACCGATTACTGGGTTGCCCTGCCGACACCATTATCACGTACATTGCATTGTCCAGTGGCTGGAGATCAGCCATCTATGTCTTCTCTGCCGACTGCCGATACCCAATGCCAACCGGACATCAGTCGAAGCAGTAGATATGTGCAGCAATGCTGCTGCTTGCATGCCAAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

139

Amino Acids

15.26

Weight (kDa)

4.89

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	64 - 112	7.2e-10	Ring finger domain
zf-rbx1	PF12678	65 - 112	5.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G29560
fragaria_vesca	FvH4_6g01660
malus_domestica	MD04G1231700.v1.1 MD12G1249700.v1.1
prunus_persica	Prupe.6G351100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449461
rosa_laevigata	RLG00000025829
rosa_multiflora	Rmu_sc0000430.1_g000025 Rmu_sc0005902.1_g000001 Rmu_sc0019012.1_g000005
rosa_roxburghii	Rroxscaffold_6G00427410
rosa_rugosa	Rorug02G0620800 Rorug02G0620900 Rorug02G0621000
rosa_samantha	Rh3AG018600 Rh3BG019000 Rh3CG017900 Rh3DG019200
rosa_wichuraiana	Rw3G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	304
AciI	CCGC	5 cut(s)	11, 59, 62, 72, 219
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	2 cut(s)	196, 285
AfiI	CCNNNNNNNGG	2 cut(s)	254, 304
AgsI	TTSAA	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	387, 395, 398
ApoI	RAATTY	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	382, 385, 399
BccI	CCATC	3 cut(s)	134, 146, 324
BceAI	ACGGC	1 cut(s)	50
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	183, 418
BisI	GCNGC	6 cut(s)	60, 63, 219, 388, 396, 399
BlsI	GCNGC	6 cut(s)	61, 64, 220, 389, 397, 400
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	264
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 304
Bse1I	ACTGG	2 cut(s)	259, 298
Bse21I	CCTNAGG	1 cut(s)	113
Bse3DI	GCAATG	2 cut(s)	286, 397
Bse8I	GATNNNNATC	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	254, 304
BseMI	GCAATG	2 cut(s)	286, 397
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	259, 298
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	382, 385, 399
BsgI	GTGCAG	1 cut(s)	406
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	26, 358
BslI	CCNNNNNNNGG	2 cut(s)	254, 304
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	145, 232, 309
BspACI	CCGC	5 cut(s)	11, 59, 62, 72, 219
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	286, 397
BsrI	ACTGG	2 cut(s)	259, 298
BssMI	GATC	3 cut(s)	145, 232, 309
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	403, 407
BstDEI	CTNAG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	148, 235, 312
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	145, 232, 309
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	382, 385, 399
BstV2I	GAAGAC	1 cut(s)	317
BstZI	CGGCCG	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	403, 407
CaiI	CAGNNNCTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	195, 284
CviAII	CATG	2 cut(s)	236, 406
CviJI	RGCY	5 cut(s)	65, 187, 304, 315, 417
CviKI_1	RGCY	5 cut(s)	65, 187, 304, 315, 417
CviQI	GTAC	2 cut(s)	195, 284
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	147, 234, 311
DpnII	GATC	3 cut(s)	145, 232, 309
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	2 cut(s)	239, 409
FaiI	YATR	6 cut(s)	165, 171, 237, 322, 383, 407
FatI	CATG	2 cut(s)	235, 405
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	60, 63, 219, 388, 396, 399
Fsp4HI	GCNGC	6 cut(s)	60, 63, 219, 388, 396, 399
FspBI	CTAG	2 cut(s)	183, 418
GluI	GCNGC	6 cut(s)	60, 63, 219, 388, 396, 399
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	26, 358
Hin1II	CATG	2 cut(s)	239, 409
HpaII	CCGG	2 cut(s)	26, 358
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	149, 236
Hpy8I	GTNNAC	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	291, 387, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	239, 409
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	145, 232, 309
LpnPI	CCDG	7 cut(s)	39, 100, 240, 277, 290, 311, 371
Lsp1109I	GCAGC	3 cut(s)	382, 385, 399
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	183, 418
MaeII	ACGT	1 cut(s)	282
MalI	GATC	3 cut(s)	147, 234, 311
MboI	GATC	3 cut(s)	145, 232, 309
MboII	GAAGA	2 cut(s)	26, 317
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	5 cut(s)	43, 122, 149, 202, 407
MroXI	GAANNNNTTC	1 cut(s)	33
MspI	CCGG	2 cut(s)	26, 358
MspR9I	CCNGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	3 cut(s)	145, 232, 309
NlaIII	CATG	2 cut(s)	239, 409
NspI	RCATGY	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	409
PagI	TCATGA	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	6 cut(s)	61, 64, 220, 389, 397, 400
Ppu21I	YACGTR	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	196, 285
RsaNI	GTAC	2 cut(s)	195, 284
SatI	GCNGC	6 cut(s)	60, 63, 219, 388, 396, 399
Sau3AI	GATC	3 cut(s)	145, 232, 309
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	5 cut(s)	54, 114, 160, 178, 285
SfaNI	GCATC	1 cut(s)	124
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	5 cut(s)	11, 59, 62, 72, 219
SspMI	CTAG	2 cut(s)	183, 418
StyD4I	CCNGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	99, 148, 369
TasI	AATT	1 cut(s)	30
TauI	GCSGC	3 cut(s)	62, 65, 221
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	3 cut(s)	387, 395, 398
TspDTI	ATGAA	2 cut(s)	186, 252
TspRI	CASTG	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	2 cut(s)	183, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.