Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Reverse (-)

13359502 .. 13361905

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G35100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATATCATCATCATCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCGATTCTCACCCGTCGTAATCTCCTCCTCTCCACCACAATCGCCACCGTAACTCCACCACCACCAGCTAAACCACCTTCCCCCGACATCACAATAACCGATCGAGTCTTCCTCGACTTCTCCCTCTGCCCCACCTACTTCCGCTCAGATCCCTCCGCGACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTCGGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATAACCGTCTCAACTTTCAAACGTATGTGTACTTCATCTTCCACATCTTACAAAAACACACCTGTCCACAAAATCTTCCCTGGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGGCGAGATACGGCGGAGGTTGGTTATTCACTCAGAGACTTACCTCGTAACACCGACGTTGTTAATTCCAAAGCTTTTTTACTTCCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAATGATGATGATGATGATATTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACTGGTCCTGGACCGTCTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTAGTGACGAGTATTTCTTCGATTCCGACGTATAAGCCGTCGGAGAATATTAAACAGTTTAACGATTTTGCGGAGTTTCTTGGAGACGAGAGAGCTCAAAACGCGAGATCTTTGTGGAATAGACCTTTGAAGACGGTTTTCATTAGTGGCTGTGGAGAGCTTAAGGTCACTAATCCTTCACTCTCTCCAACTTTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

290

Amino Acids

31.39

Weight (kDa)

6.82

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	83 - 241	6.1e-19	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	3 cut(s)	212, 261, 776
AciI	CCGC	7 cut(s)	196, 210, 259, 425, 620, 633, 743
AclWI	GGATC	2 cut(s)	197, 560
AcoI	YGGCCR	2 cut(s)	256, 280
AcsI	RAATTY	1 cut(s)	587
AfaI	GTAC	1 cut(s)	325
AflII	CTTAAG	1 cut(s)	833
AgsI	TTSAA	5 cut(s)	246, 313, 587, 662, 802
AjnI	CCWGG	2 cut(s)	373, 607
AluBI	AGCT	5 cut(s)	122, 485, 625, 767, 832
AluI	AGCT	5 cut(s)	122, 485, 625, 767, 832
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	4 cut(s)	307, 441, 621, 750
AlwI	GGATC	2 cut(s)	197, 560
AoxI	GGCC	2 cut(s)	256, 280
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	605, 611
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	605, 611
BanII	GRGCYC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	4 cut(s)	310, 316, 342, 348
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	3 cut(s)	154, 403, 809
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	5 cut(s)	267, 295, 428, 438, 694
BciT130I	CCWGG	2 cut(s)	375, 609
BcoDI	GTCTC	4 cut(s)	307, 441, 621, 750
BfrI	CTTAAG	1 cut(s)	833
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	2 cut(s)	259, 623
BlsI	GCNGC	2 cut(s)	260, 624
Bme1390I	CCNGG	2 cut(s)	375, 609
Bme18I	GGWCC	2 cut(s)	605, 611
BmgT120I	GGNCC	2 cut(s)	605, 611
BmrFI	CCNGG	2 cut(s)	375, 609
BmsI	GCATC	1 cut(s)	41
BpiI	GAAGAC	3 cut(s)	154, 403, 809
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bse1I	ACTGG	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	375, 609
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	20, 48
BseMII	CTCAG	3 cut(s)	213, 457, 525
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	5 cut(s)	68, 71, 211, 240, 420
BseX3I	CGGCCG	2 cut(s)	256, 280
BseXI	GCAGC	1 cut(s)	634
Bsh1236I	CGCG	3 cut(s)	212, 261, 776
Bsh1285I	CGRYCG	3 cut(s)	157, 259, 283
BshFI	GGCC	2 cut(s)	258, 282
BsiEI	CGRYCG	3 cut(s)	157, 259, 283
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	1 cut(s)	393
BsmAI	GTCTC	4 cut(s)	307, 441, 621, 750
BsmBI	CGTCTC	3 cut(s)	307, 621, 750
BsnI	GGCC	2 cut(s)	258, 282
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	4 cut(s)	154, 202, 565, 779
BspACI	CCGC	7 cut(s)	196, 210, 259, 425, 620, 633, 743
BspANI	GGCC	2 cut(s)	258, 282
BspCNI	CTCAG	3 cut(s)	212, 456, 526
BspFNI	CGCG	3 cut(s)	212, 261, 776
BspPI	GGATC	2 cut(s)	197, 560
BspTI	CTTAAG	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	4 cut(s)	154, 202, 565, 779
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	375, 609
Bst4CI	ACNGT	6 cut(s)	103, 301, 615, 655, 729, 808
BstAFI	CTTAAG	1 cut(s)	833
BstDEI	CTNAG	3 cut(s)	199, 443, 534
BstF5I	GGATG	2 cut(s)	20, 48
BstFNI	CGCG	3 cut(s)	212, 261, 776
BstKTI	GATC	4 cut(s)	157, 205, 568, 782
BstMAI	GTCTC	4 cut(s)	307, 441, 621, 750
BstMBI	GATC	4 cut(s)	154, 202, 565, 779
BstMCI	CGRYCG	3 cut(s)	157, 259, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNI	CCWGG	2 cut(s)	375, 609
BstSCI	CCNGG	2 cut(s)	373, 607
BstUI	CGCG	3 cut(s)	212, 261, 776
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	3 cut(s)	154, 403, 809
BstX2I	RGATCY	2 cut(s)	202, 779
BstYI	RGATCY	2 cut(s)	202, 779
BstZI	CGGCCG	2 cut(s)	256, 280
BsuRI	GGCC	2 cut(s)	258, 282
BtsCI	GGATG	2 cut(s)	20, 48
Cfr13I	GGNCC	2 cut(s)	605, 611
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	28, 500
CviJI	RGCY	9 cut(s)	122, 258, 282, 485, 625, 709, 767, 822, 832
CviKI_1	RGCY	9 cut(s)	122, 258, 282, 485, 625, 709, 767, 822, 832
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	199, 443, 534
DpnI	GATC	4 cut(s)	156, 204, 567, 781
DpnII	GATC	4 cut(s)	154, 202, 565, 779
EaeI	YGGCCR	2 cut(s)	256, 280
EagI	CGGCCG	2 cut(s)	256, 280
EciI	GGCGGA	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	767
EclXI	CGGCCG	2 cut(s)	256, 280
Eco24I	GRGCYC	1 cut(s)	769
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	605, 611
Eco52I	CGGCCG	2 cut(s)	256, 280
Eco53kI	GAGCTC	1 cut(s)	767
EcoICRI	GAGCTC	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	373, 607
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	769
Esp3I	CGTCTC	3 cut(s)	307, 621, 750
FaeI	CATG	2 cut(s)	31, 503
FaiI	YATR	7 cut(s)	29, 277, 296, 320, 501, 576, 705
FatI	CATG	2 cut(s)	27, 499
Fnu4HI	GCNGC	2 cut(s)	259, 623
FokI	GGATG	2 cut(s)	7, 35
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	2 cut(s)	259, 623
GluI	GCNGC	2 cut(s)	259, 623
HaeIII	GGCC	2 cut(s)	258, 282
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	31, 503
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	5 cut(s)	58, 159, 242, 561, 694
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	324, 361
Hpy188I	TCNGA	9 cut(s)	57, 202, 241, 272, 446, 535, 650, 699, 715
Hpy188III	TCNNGA	2 cut(s)	569, 659
Hpy8I	GTNNAC	2 cut(s)	324, 361
Hpy99I	CGWCG	5 cut(s)	72, 266, 470, 703, 715
HpyAV	CCTTC	3 cut(s)	141, 656, 858
HpyCH4III	ACNGT	6 cut(s)	103, 301, 615, 655, 729, 808
HpyCH4IV	ACGT	4 cut(s)	288, 316, 468, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	3 cut(s)	199, 443, 534
HpySE526I	ACGT	4 cut(s)	288, 316, 468, 701
Hsp92II	CATG	2 cut(s)	31, 503
Kzo9I	GATC	4 cut(s)	154, 202, 565, 779
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	4 cut(s)	288, 316, 468, 701
MaeIII	GTNAC	6 cut(s)	103, 284, 458, 635, 676, 838
MalI	GATC	4 cut(s)	156, 204, 567, 781
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	4 cut(s)	154, 202, 565, 779
MboII	GAAGA	6 cut(s)	154, 324, 361, 408, 681, 814
MflI	RGATCY	2 cut(s)	202, 779
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	2 cut(s)	475, 587
MlyI	GAGTC	2 cut(s)	168, 555
MmeI	TCCRAC	3 cut(s)	48, 693, 722
MseI	TTAA	6 cut(s)	474, 593, 723, 732, 834, 871
MslI	CAYNNNNRTG	1 cut(s)	504
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	375, 609
MvaI	CCWGG	2 cut(s)	375, 609
MvnI	CGCG	3 cut(s)	212, 261, 776
MwoI	GCNNNNNNNGC	1 cut(s)	773
NdeII	GATC	4 cut(s)	154, 202, 565, 779
NlaIII	CATG	2 cut(s)	31, 503
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	284, 676, 838
PcsI	WCGNNNNNNNCGW	4 cut(s)	261, 285, 698, 707
PfeI	GAWTC	3 cut(s)	58, 242, 694
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	260, 624
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	2 cut(s)	167, 555
PpsI	GAGTC	2 cut(s)	167, 555
Psp124BI	GAGCTC	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	373, 607
PspGI	CCWGG	2 cut(s)	373, 607
PspPI	GGNCC	2 cut(s)	605, 611
PsuI	RGATCY	2 cut(s)	202, 779
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	769
SaqAI	TTAA	6 cut(s)	474, 593, 723, 732, 834, 871
SatI	GCNGC	2 cut(s)	259, 623
Sau3AI	GATC	4 cut(s)	154, 202, 565, 779
Sau96I	GGNCC	2 cut(s)	605, 611
SchI	GAGTC	2 cut(s)	168, 555
ScrFI	CCNGG	2 cut(s)	375, 609
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	1 cut(s)	41
SinI	GGWCC	2 cut(s)	605, 611
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	2 cut(s)	475, 587
SsiI	CCGC	7 cut(s)	196, 210, 259, 425, 620, 633, 743
SspI	AATATT	1 cut(s)	721
SstI	GAGCTC	1 cut(s)	769
StyD4I	CCNGG	2 cut(s)	373, 607
TaaI	ACNGT	6 cut(s)	103, 301, 615, 655, 729, 808
TaiI	ACGT	4 cut(s)	291, 319, 471, 704
TaqI	TCGA	5 cut(s)	157, 168, 564, 627, 692
TasI	AATT	2 cut(s)	475, 587
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	3 cut(s)	58, 242, 694
Tru1I	TTAA	6 cut(s)	474, 593, 723, 732, 834, 871
Tru9I	TTAA	6 cut(s)	474, 593, 723, 732, 834, 871
TseFI	GTSAC	3 cut(s)	284, 676, 838
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	3 cut(s)	284, 676, 838
TspDTI	ATGAA	2 cut(s)	318, 802
Vha464I	CTTAAG	1 cut(s)	833
VpaK11BI	GGWCC	2 cut(s)	605, 611
XapI	RAATTY	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.