Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

1214515 .. 1215688

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTTACTCTATAATCACACCACCACCTACTCCTCCACCTCTTCTCCACCCGAACCCGAACCCGAAGCCCAAACCCAATGCCCTCTCCCTGACCCGACGCTCCCTCCTCCTCTCCTCCACCTCCCTCTCCCTCACCACCCTCCCCTCCTCCGCCGCCGCCGCCTCCCCTCCGCCGCCCGACACTACCATCACCGACCGCGTCTTCATGGACTTCAGCCTCTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCCCCGACCCGGTCCCTCTGGGCCGGGTCGTCCTGGGCCTCTACGGCCACCACGTCCCCATCACCGTCGCGAACTTCAAGGCCATGGTCACCTCCGCCGCCTACAAGGGCACAACCGTCCATAAACTCTTCCCGGGTCAATTCTTCCTCGCGGGCCACCAGGGCGATAAACCCGGCGACGTCCGGCGGCCCATTGGCCTCGTCGCCCCGAACACCGAGACCGTCGATTCCAGGGCGTTTGAGTTGGCTCACTCCCGGCCAGGGCTTCTCTCCCTTAGTCTATCGGAGAACGACGACGACGATGAGATCAAGCTCGACCCGGATTACCGAAACGTTGAGTTCTCCATCACTACTGGACCCGGCCCATGTCCTCAGCTCGATTACAAGAACATTGTCTTCGGCTCAGTACTTGAAGGTTTGGATGTTGTGACGGCTATAGCAGCTATACCGACGTACAGGCCATCGGAGAGAATACAGCAGTTCAACGATTTTGCAACGTTTATCGGAGATGATAGAGCAATGCAGGCTCGGGCGCTGTGGAATAAGCCTCTCAAAACTGTGTATATCAGTGACTGTGGTGAGCTCAAAGTTGCAAAGCCTTCCCTTTCTCCTCCTAGTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

296

Amino Acids

32.1

Weight (kDa)

6.3

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	95 - 243	4.8e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
AccII	CGCG	3 cut(s)	201, 335, 416
AclI	AACGTT	2 cut(s)	597, 761
AcoI	YGGCCR	2 cut(s)	310, 521
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	2 cut(s)	672, 719
AfiI	CCNNNNNNNGG	2 cut(s)	274, 525
AgsI	TTSAA	3 cut(s)	343, 677, 748
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	4 cut(s)	297, 423, 494, 523
AluBI	AGCT	4 cut(s)	577, 640, 707, 847
AluI	AGCT	4 cut(s)	577, 640, 707, 847
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	1 cut(s)	476
AlwNI	CAGNNNCTG	2 cut(s)	222, 837
Ama87I	CYCGRG	2 cut(s)	397, 792
ApeKI	GCWGC	1 cut(s)	704
AspLEI	GCGC	1 cut(s)	799
AspS9I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
AsuC2I	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
AsuHPI	GGTGA	5 cut(s)	127, 184, 319, 346, 854
AvaI	CYCGRG	2 cut(s)	397, 792
AvaII	GGWCC	3 cut(s)	243, 277, 620
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	3 cut(s)	196, 652, 875
Bbv12I	GWGCWC	1 cut(s)	849
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	716
BccI	CCATC	4 cut(s)	197, 332, 617, 733
BceAI	ACGGC	2 cut(s)	325, 711
BciT130I	CCWGG	4 cut(s)	299, 425, 496, 525
BcnI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	800
BglI	GCCNNNNNGGC	2 cut(s)	309, 426
BisI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
BlsI	GCNGC	7 cut(s)	157, 160, 163, 177, 364, 453, 706
BmcAI	AGTACT	1 cut(s)	672
Bme18I	GGWCC	3 cut(s)	243, 277, 620
BmeT110I	CYCGRG	2 cut(s)	397, 792
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
BmiI	GGNNCC	2 cut(s)	279, 622
BpiI	GAAGAC	3 cut(s)	196, 652, 875
Bpu10I	CCTNAGC	1 cut(s)	636
BpuMI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	6 cut(s)	298, 348, 397, 424, 495, 524
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 525
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	4 cut(s)	299, 425, 496, 525
BseDI	CCNNGG	6 cut(s)	298, 348, 397, 424, 495, 524
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	2 cut(s)	274, 525
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	650, 681
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	6 cut(s)	24, 98, 101, 106, 139, 864
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	716
Bsh1236I	CGCG	3 cut(s)	201, 335, 416
Bsh1285I	CGRYCG	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	849
BsiHKCI	CYCGRG	2 cut(s)	397, 792
BsiSI	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
BslFI	GGGAC	2 cut(s)	263, 305
BslI	CCNNNNNNNGG	2 cut(s)	274, 525
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	263, 305
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	2 cut(s)	397, 792
Bsp1286I	GDGCHC	2 cut(s)	377, 849
Bsp143I	GATC	1 cut(s)	570
Bsp19I	CCATGG	1 cut(s)	348
Bsp68I	TCGCGA	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	649, 680
BspFNI	CGCG	3 cut(s)	201, 335, 416
BspLI	GGNNCC	2 cut(s)	279, 622
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	6 cut(s)	298, 348, 397, 424, 495, 524
BssMI	GATC	1 cut(s)	570
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	4 cut(s)	299, 425, 496, 525
Bst4CI	ACNGT	5 cut(s)	331, 382, 487, 823, 839
Bst6I	CTCTTC	2 cut(s)	48, 398
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	418, 789
BstDEI	CTNAG	3 cut(s)	539, 636, 667
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	3 cut(s)	201, 335, 416
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	799
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	570
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
BstNI	CCWGG	4 cut(s)	299, 425, 496, 525
BstPI	GGTNACC	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	3 cut(s)	201, 335, 416
BstV1I	GCAGC	1 cut(s)	716
BstV2I	GAAGAC	3 cut(s)	196, 652, 875
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	838
BtuMI	TCGCGA	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	418, 789
CaiI	CAGNNNCTG	2 cut(s)	222, 837
CfoI	GCGC	1 cut(s)	799
Cfr13I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	2 cut(s)	108, 190
Csp6I	GTAC	2 cut(s)	671, 718
CviAII	CATG	3 cut(s)	208, 349, 630
CviQI	GTAC	2 cut(s)	671, 718
DdeI	CTNAG	3 cut(s)	539, 636, 667
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
EaeI	YGGCCR	2 cut(s)	310, 521
Eam1104I	CTCTTC	2 cut(s)	48, 398
EarI	CTCTTC	2 cut(s)	48, 398
EciI	GGCGGA	3 cut(s)	142, 162, 349
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	3 cut(s)	243, 277, 620
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	397, 792
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	847
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	4 cut(s)	297, 423, 494, 523
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	211, 352, 633
FaiI	YATR	8 cut(s)	14, 209, 350, 387, 631, 701, 710, 828
FaqI	GGGAC	2 cut(s)	263, 305
FatI	CATG	3 cut(s)	207, 348, 629
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
HaeII	RGCGCY	1 cut(s)	800
HapII	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
HgaI	GACGC	2 cut(s)	108, 190
HhaI	GCGC	1 cut(s)	799
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	211, 352, 633
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
HphI	GGTGA	5 cut(s)	127, 184, 319, 346, 854
Hpy188I	TCNGA	4 cut(s)	250, 550, 730, 770
Hpy188III	TCNNGA	1 cut(s)	334
Hpy99I	CGWCG	9 cut(s)	102, 335, 446, 470, 491, 560, 563, 566, 718
HpyAV	CCTTC	2 cut(s)	671, 873
HpyCH4III	ACNGT	5 cut(s)	331, 382, 487, 823, 839
HpyCH4IV	ACGT	5 cut(s)	318, 444, 597, 716, 761
HpyCH4V	TGCA	3 cut(s)	758, 787, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
HpyF3I	CTNAG	3 cut(s)	539, 636, 667
HpySE526I	ACGT	5 cut(s)	318, 444, 597, 716, 761
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	211, 352, 633
HspAI	GCGC	1 cut(s)	797
Kzo9I	GATC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	716
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	5 cut(s)	318, 444, 597, 716, 761
MaeIII	GTNAC	4 cut(s)	5, 352, 691, 833
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	6 cut(s)	35, 196, 385, 400, 652, 875
MhlI	GDGCHC	2 cut(s)	377, 849
MluCI	AATT	1 cut(s)	404
MseI	TTAA	1 cut(s)	889
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
MvaI	CCWGG	4 cut(s)	299, 425, 496, 525
MvnI	CGCG	3 cut(s)	201, 335, 416
MwoI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
NciI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	3 cut(s)	211, 352, 633
NlaIV	GGNNCC	2 cut(s)	279, 622
NmuCI	GTSAC	3 cut(s)	352, 691, 833
NruI	TCGCGA	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 561
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	2 cut(s)	200, 275
PkrI	GCNGC	7 cut(s)	157, 160, 163, 177, 364, 453, 706
Psp124BI	GAGCTC	1 cut(s)	849
Psp1406I	AACGTT	2 cut(s)	597, 761
Psp6I	CCWGG	4 cut(s)	297, 423, 494, 523
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	4 cut(s)	297, 423, 494, 523
PspN4I	GGNNCC	2 cut(s)	279, 622
PspPI	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
PstNI	CAGNNNCTG	2 cut(s)	222, 837
PsyI	GACNNNGTC	2 cut(s)	200, 275
RruI	TCGCGA	1 cut(s)	335
RsaI	GTAC	2 cut(s)	672, 719
RsaNI	GTAC	2 cut(s)	671, 718
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	889
SatI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
Sau3AI	GATC	1 cut(s)	570
Sau96I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
ScaI	AGTACT	1 cut(s)	672
SduI	GDGCHC	2 cut(s)	377, 849
SfcI	CTRYAG	1 cut(s)	699
SfiI	GGCCNNNNNGGCC	1 cut(s)	309
SinI	GGWCC	3 cut(s)	243, 277, 620
SmaI	CCCGGG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	5 cut(s)	331, 382, 487, 823, 839
TaiI	ACGT	5 cut(s)	321, 447, 600, 719, 764
TaqI	TCGA	3 cut(s)	489, 579, 642
TasI	AATT	1 cut(s)	404
TatI	WGTACW	1 cut(s)	670
TauI	GCSGC	6 cut(s)	158, 161, 164, 178, 365, 454
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	889
Tru9I	TTAA	1 cut(s)	889
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	3 cut(s)	352, 691, 833
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	3 cut(s)	352, 691, 833
TspDTI	ATGAA	1 cut(s)	196
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	1 cut(s)	838
Tth111I	GACNNNGTC	2 cut(s)	200, 275
VpaK11BI	GGWCC	3 cut(s)	243, 277, 620
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	879
ZraI	GACGTC	1 cut(s)	445
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.