Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

1461176 .. 1462142

Gene Structure 967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGACTTCAGCCTCTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCCCCGACCCGGTCCCTCTGGGCCGGGTCGTCCTGGGCCTCTACGGCCACCACGTCCCCATCACCGTCGCGAACTTCAAGGCCATGGTCACCTCCGCCGCCTACAAGGGCACAACCGTCCATAAACTCTTCCCGGGTCAATTCTTCCTCGCGGGCCACCAGGGCGATAAACCCGGCGACGTCCGGCGGCCCATTGGCCTCGTCGCCCCGAACACCGAGACCGTCGATTCCAGGGCGTTTGAGTTGACTCACTCCCGGCCAGGGCTTCTCTCCCTTAGTCTATCGGAGAACGACGACGACGATGAGATCAAGCTCGACCCGGATTACCGAAACGTTGAGTTCTCCATCACTACTGGACCCGGCCCATGTCCTCAGCTCGATTACAAGAACATTGTCTTCGGCTCAGTACTTGAAGGTTTGGATGTTGTGACAGCTATAGCAGCTATACCGACGTACAGGCCATCGGAGAGAATACAGCAGTTCAACGATTTTGCAACGTTTATCGGAGATGATAGGGCAATGCAGGCTCGGGCGCTGTGGAATAAGCCTCTCAAAACTGTGTATATCAGTGACTGTGGTGAGCTCAAAGTTGCAAAGCCTTCCCTTTCTCCTCCTAGTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

227

Amino Acids

24.93

Weight (kDa)

5.51

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	26 - 174	1.9e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccII	CGCG	2 cut(s)	128, 209
AciI	CCGC	5 cut(s)	31, 153, 156, 209, 244
AclI	AACGTT	2 cut(s)	390, 554
AcoI	YGGCCR	2 cut(s)	103, 314
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	465, 512
AfiI	CCNNNNNNNGG	2 cut(s)	67, 318
AgsI	TTSAA	3 cut(s)	136, 470, 541
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	4 cut(s)	90, 216, 287, 316
AluBI	AGCT	5 cut(s)	370, 433, 491, 500, 640
AluI	AGCT	5 cut(s)	370, 433, 491, 500, 640
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	269
AlwNI	CAGNNNCTG	2 cut(s)	15, 630
Ama87I	CYCGRG	2 cut(s)	190, 585
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	8 cut(s)	36, 70, 79, 94, 211, 246, 413, 419
AsuC2I	CCSGG	8 cut(s)	68, 83, 191, 192, 231, 313, 377, 417
AsuHPI	GGTGA	3 cut(s)	112, 139, 647
AvaI	CYCGRG	2 cut(s)	190, 585
AvaII	GGWCC	3 cut(s)	36, 70, 413
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	642
BbsI	GAAGAC	2 cut(s)	445, 668
Bbv12I	GWGCWC	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	3 cut(s)	125, 410, 526
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	4 cut(s)	92, 218, 289, 318
BcnI	CCSGG	8 cut(s)	68, 83, 191, 192, 231, 313, 377, 417
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	593
BglI	GCCNNNNNGGC	2 cut(s)	102, 219
BisI	GCNGC	3 cut(s)	156, 245, 498
BlsI	GCNGC	3 cut(s)	157, 246, 499
BmcAI	AGTACT	1 cut(s)	465
Bme18I	GGWCC	3 cut(s)	36, 70, 413
BmeT110I	CYCGRG	2 cut(s)	190, 585
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	8 cut(s)	36, 70, 79, 94, 211, 246, 413, 419
BmiI	GGNNCC	2 cut(s)	72, 415
BpiI	GAAGAC	2 cut(s)	445, 668
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	8 cut(s)	68, 83, 191, 192, 231, 313, 377, 417
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	6 cut(s)	91, 141, 190, 217, 288, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 318
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	4 cut(s)	92, 218, 289, 318
BseDI	CCNNGG	6 cut(s)	91, 141, 190, 217, 288, 317
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	67, 318
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	443, 474
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	657
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	509
Bsh1236I	CGCG	2 cut(s)	128, 209
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	2 cut(s)	190, 585
BsiSI	CCGG	8 cut(s)	68, 82, 191, 231, 241, 313, 377, 417
BslFI	GGGAC	2 cut(s)	56, 98
BslI	CCNNNNNNNGG	2 cut(s)	67, 318
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	56, 98
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	2 cut(s)	190, 585
Bsp1286I	GDGCHC	2 cut(s)	170, 642
Bsp143I	GATC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	141
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	5 cut(s)	31, 153, 156, 209, 244
BspCNI	CTCAG	2 cut(s)	442, 473
BspFNI	CGCG	2 cut(s)	128, 209
BspLI	GGNNCC	2 cut(s)	72, 415
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	6 cut(s)	91, 141, 190, 217, 288, 317
BssMI	GATC	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	4 cut(s)	92, 218, 289, 318
Bst4CI	ACNGT	5 cut(s)	124, 175, 280, 616, 632
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	211, 582
BstDEI	CTNAG	3 cut(s)	332, 429, 460
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	128, 209
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 219, 497, 581
BstNI	CCWGG	4 cut(s)	92, 218, 289, 318
BstPI	GGTNACC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	2 cut(s)	128, 209
BstV1I	GCAGC	1 cut(s)	509
BstV2I	GAAGAC	2 cut(s)	445, 668
BtgI	CCRYGG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	631
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	211, 582
CaiI	CAGNNNCTG	2 cut(s)	15, 630
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	8 cut(s)	36, 70, 79, 94, 211, 246, 413, 419
Cfr9I	CCCGGG	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	464, 511
CviAII	CATG	2 cut(s)	142, 423
CviQI	GTAC	2 cut(s)	464, 511
DdeI	CTNAG	3 cut(s)	332, 429, 460
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	103, 314
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	3 cut(s)	36, 70, 413
Eco53kI	GAGCTC	1 cut(s)	640
Eco88I	CYCGRG	2 cut(s)	190, 585
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	4 cut(s)	90, 216, 287, 316
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	145, 426
FaiI	YATR	6 cut(s)	143, 180, 424, 494, 503, 621
FaqI	GGGAC	2 cut(s)	56, 98
FatI	CATG	2 cut(s)	141, 422
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	156, 245, 498
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	3 cut(s)	156, 245, 498
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	3 cut(s)	156, 245, 498
HaeII	RGCGCY	1 cut(s)	593
HapII	CCGG	8 cut(s)	68, 82, 191, 231, 241, 313, 377, 417
HhaI	GCGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	145, 426
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	2 cut(s)	284, 304
HpaII	CCGG	8 cut(s)	68, 82, 191, 231, 241, 313, 377, 417
HphI	GGTGA	3 cut(s)	112, 139, 647
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	43, 343, 523, 563
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	8 cut(s)	128, 239, 263, 284, 353, 356, 359, 511
HpyAV	CCTTC	2 cut(s)	464, 666
HpyCH4III	ACNGT	5 cut(s)	124, 175, 280, 616, 632
HpyCH4IV	ACGT	5 cut(s)	111, 237, 390, 509, 554
HpyCH4V	TGCA	3 cut(s)	551, 580, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 219, 497, 581
HpyF3I	CTNAG	3 cut(s)	332, 429, 460
HpySE526I	ACGT	5 cut(s)	111, 237, 390, 509, 554
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	145, 426
HspAI	GCGC	1 cut(s)	590
Kzo9I	GATC	1 cut(s)	363
Lsp1109I	GCAGC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	5 cut(s)	111, 237, 390, 509, 554
MaeIII	GTNAC	3 cut(s)	145, 484, 626
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	4 cut(s)	178, 193, 445, 668
MhlI	GDGCHC	2 cut(s)	170, 642
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	298
MseI	TTAA	1 cut(s)	682
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	8 cut(s)	68, 82, 191, 231, 241, 313, 377, 417
MvaI	CCWGG	4 cut(s)	92, 218, 289, 318
MvnI	CGCG	2 cut(s)	128, 209
MwoI	GCNNNNNNNGC	4 cut(s)	102, 219, 497, 581
NciI	CCSGG	8 cut(s)	68, 83, 191, 192, 231, 313, 377, 417
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	145, 426
NlaIV	GGNNCC	2 cut(s)	72, 415
NmuCI	GTSAC	3 cut(s)	145, 484, 626
NruI	TCGCGA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 354
PfeI	GAWTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	157, 246, 499
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	642
Psp1406I	AACGTT	2 cut(s)	390, 554
Psp6I	CCWGG	4 cut(s)	90, 216, 287, 316
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	4 cut(s)	90, 216, 287, 316
PspN4I	GGNNCC	2 cut(s)	72, 415
PspPI	GGNCC	8 cut(s)	36, 70, 79, 94, 211, 246, 413, 419
PstNI	CAGNNNCTG	2 cut(s)	15, 630
PsyI	GACNNNGTC	1 cut(s)	68
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	2 cut(s)	465, 512
RsaNI	GTAC	2 cut(s)	464, 511
SacI	GAGCTC	1 cut(s)	642
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	3 cut(s)	156, 245, 498
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	8 cut(s)	36, 70, 79, 94, 211, 246, 413, 419
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	170, 642
SfcI	CTRYAG	1 cut(s)	492
SfiI	GGCCNNNNNGGCC	1 cut(s)	102
SinI	GGWCC	3 cut(s)	36, 70, 413
SmaI	CCCGGG	1 cut(s)	192
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	5 cut(s)	31, 153, 156, 209, 244
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	5 cut(s)	124, 175, 280, 616, 632
TaiI	ACGT	5 cut(s)	114, 240, 393, 512, 557
TaqI	TCGA	3 cut(s)	282, 372, 435
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	2 cut(s)	158, 247
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	3 cut(s)	145, 484, 626
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	3 cut(s)	145, 484, 626
TspMI	CCCGGG	1 cut(s)	190
TspRI	CASTG	1 cut(s)	631
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	36, 70, 413
XmaI	CCCGGG	1 cut(s)	190
XspI	CTAG	1 cut(s)	672
ZraI	GACGTC	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.