Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

1705108 .. 1706531

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTTACTCTATAATCACACCACCACCCACTCCTCCACCTCTTCTCCACCCGAACCCGAACCCGAAGCCCAAACCCAATGCCCTCTCCCTGACCCGACGCTCCCTCCTCCTCTCCTCCACCTCCCTCTCCCTCACCACCCTCCCCTCCTCCGCCGCCGCCTCCCCTCCGCCGCCCGACACCACCATCACCGACCGCGTCTTCATGGACTTCAGCCTCTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCCCCGACCCGGTCCCTCTGGGCCGGGTCGTCCTGGGCCTCTACGGCCACCACGTCCCCATCACCGTCGCGAACTTCAAGGCCATGGTCACCTCCGCCGCCTACAAGGGCACAACCGTCCATAAACTCTTCCCGGGTCAATTCTTCCTCGCGGGCCACCAGGGCGATAAACCCGGCGACGTCCGGCGGCCCATTGGCCTCGTCGCCCCGAACACCGAGACCGTCGATTCCAGGGCGTTTGAGTTGACTCACTCCCGGCCAGGGCTTCTCTCCCTTAGTCTATCGGAGAACGACGACGACGATGAGATCAAGCTCGACCCGGATTACCGAAACGTTGAGTTCTCCATCACTACCGGACCCGGCCCATGTCCTCAGCTCGATTACAAGAACATTGTCTTTGGCTCAGTACTTGAAGGTTTGGATGTTGTGACAGCTATAGCAGCTATACCGACGTACAGGCCATCGGAGAGAATACAGCAGTTCAACGATTTTGCAACGTTTATCGGAGATGATAGAGCAATGCAGGCTCGGGCGCTGTGGAATAAGCCTCTCAAAACTGTGTATATCAGTGACTGTGGTGAGCTCAAAGTTGCAAAGCCTTCCCTTTCTCCTCCTAGTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

295

Amino Acids

32.06

Weight (kDa)

6.3

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	94 - 242	4.1e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccII	CGCG	3 cut(s)	198, 332, 413
AclI	AACGTT	2 cut(s)	594, 758
AcoI	YGGCCR	2 cut(s)	307, 518
AcuI	CTGAAG	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	669, 716
AfiI	CCNNNNNNNGG	2 cut(s)	271, 522
AgsI	TTSAA	3 cut(s)	340, 674, 745
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	4 cut(s)	294, 420, 491, 520
AluBI	AGCT	5 cut(s)	574, 637, 695, 704, 844
AluI	AGCT	5 cut(s)	574, 637, 695, 704, 844
Alw21I	GWGCWC	1 cut(s)	846
Alw26I	GTCTC	1 cut(s)	473
AlwNI	CAGNNNCTG	2 cut(s)	219, 834
Ama87I	CYCGRG	2 cut(s)	394, 789
ApeKI	GCWGC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	8 cut(s)	240, 274, 283, 298, 415, 450, 617, 623
AsuC2I	CCSGG	8 cut(s)	272, 287, 395, 396, 435, 517, 581, 621
AsuHPI	GGTGA	5 cut(s)	127, 181, 316, 343, 851
AvaI	CYCGRG	2 cut(s)	394, 789
AvaII	GGWCC	3 cut(s)	240, 274, 617
BaeGI	GKGCMC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	846
BbsI	GAAGAC	2 cut(s)	193, 872
Bbv12I	GWGCWC	1 cut(s)	846
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	713
BccI	CCATC	4 cut(s)	194, 329, 614, 730
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	4 cut(s)	296, 422, 493, 522
BcnI	CCSGG	8 cut(s)	272, 287, 395, 396, 435, 517, 581, 621
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	1 cut(s)	797
BglI	GCCNNNNNGGC	2 cut(s)	306, 423
BisI	GCNGC	6 cut(s)	156, 159, 173, 360, 449, 702
BlsI	GCNGC	6 cut(s)	157, 160, 174, 361, 450, 703
BmcAI	AGTACT	1 cut(s)	669
Bme18I	GGWCC	3 cut(s)	240, 274, 617
BmeT110I	CYCGRG	2 cut(s)	394, 789
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	8 cut(s)	240, 274, 283, 298, 415, 450, 617, 623
BmiI	GGNNCC	2 cut(s)	276, 619
BpiI	GAAGAC	2 cut(s)	193, 872
Bpu10I	CCTNAGC	1 cut(s)	633
BpuMI	CCSGG	8 cut(s)	272, 287, 395, 396, 435, 517, 581, 621
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	6 cut(s)	295, 345, 394, 421, 492, 521
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 522
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	4 cut(s)	296, 422, 493, 522
BseDI	CCNNGG	6 cut(s)	295, 345, 394, 421, 492, 521
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	271, 522
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	647, 678
BseRI	GAGGAG	6 cut(s)	24, 98, 101, 106, 139, 861
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	713
Bsh1236I	CGCG	3 cut(s)	198, 332, 413
Bsh1285I	CGRYCG	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	846
BsiHKCI	CYCGRG	2 cut(s)	394, 789
BsiSI	CCGG	9 cut(s)	272, 286, 395, 435, 445, 517, 581, 615, 621
BslFI	GGGAC	2 cut(s)	260, 302
BslI	CCNNNNNNNGG	2 cut(s)	271, 522
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	260, 302
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	394, 789
Bsp1286I	GDGCHC	2 cut(s)	374, 846
Bsp143I	GATC	1 cut(s)	567
Bsp19I	CCATGG	1 cut(s)	345
Bsp68I	TCGCGA	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	646, 677
BspFNI	CGCG	3 cut(s)	198, 332, 413
BspLI	GGNNCC	2 cut(s)	276, 619
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	786
BssECI	CCNNGG	6 cut(s)	295, 345, 394, 421, 492, 521
BssMI	GATC	1 cut(s)	567
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	4 cut(s)	296, 422, 493, 522
Bst4CI	ACNGT	5 cut(s)	328, 379, 484, 820, 836
Bst6I	CTCTTC	2 cut(s)	48, 395
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	415, 786
BstDEI	CTNAG	3 cut(s)	536, 633, 664
BstDSI	CCRYGG	1 cut(s)	345
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	3 cut(s)	198, 332, 413
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	1 cut(s)	570
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	567
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	306, 423, 701, 785
BstNI	CCWGG	4 cut(s)	296, 422, 493, 522
BstPI	GGTNACC	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	374
BstUI	CGCG	3 cut(s)	198, 332, 413
BstV1I	GCAGC	1 cut(s)	713
BstV2I	GAAGAC	2 cut(s)	193, 872
BtgI	CCRYGG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	835
BtuMI	TCGCGA	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	415, 786
CaiI	CAGNNNCTG	2 cut(s)	219, 834
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	8 cut(s)	240, 274, 283, 298, 415, 450, 617, 623
Cfr9I	CCCGGG	1 cut(s)	394
CseI	GACGC	2 cut(s)	108, 187
Csp6I	GTAC	2 cut(s)	668, 715
CviAII	CATG	3 cut(s)	205, 346, 627
CviQI	GTAC	2 cut(s)	668, 715
DdeI	CTNAG	3 cut(s)	536, 633, 664
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
EaeI	YGGCCR	2 cut(s)	307, 518
Eam1104I	CTCTTC	2 cut(s)	48, 395
EarI	CTCTTC	2 cut(s)	48, 395
EciI	GGCGGA	3 cut(s)	142, 159, 346
Ecl136II	GAGCTC	1 cut(s)	844
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	846
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	3 cut(s)	240, 274, 617
Eco53kI	GAGCTC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	196
Eco88I	CYCGRG	2 cut(s)	394, 789
Eco91I	GGTNACC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	844
EcoO65I	GGTNACC	1 cut(s)	349
EcoRII	CCWGG	4 cut(s)	294, 420, 491, 520
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	208, 349, 630
FaiI	YATR	8 cut(s)	14, 206, 347, 384, 628, 698, 707, 825
FaqI	GGGAC	2 cut(s)	260, 302
FatI	CATG	3 cut(s)	204, 345, 626
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	6 cut(s)	156, 159, 173, 360, 449, 702
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	1 cut(s)	846
Fsp4HI	GCNGC	6 cut(s)	156, 159, 173, 360, 449, 702
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	6 cut(s)	156, 159, 173, 360, 449, 702
HaeII	RGCGCY	1 cut(s)	797
HapII	CCGG	9 cut(s)	272, 286, 395, 435, 445, 517, 581, 615, 621
HgaI	GACGC	2 cut(s)	108, 187
HhaI	GCGC	1 cut(s)	796
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	208, 349, 630
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	2 cut(s)	488, 508
HpaII	CCGG	9 cut(s)	272, 286, 395, 435, 445, 517, 581, 615, 621
HphI	GGTGA	5 cut(s)	127, 181, 316, 343, 851
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	4 cut(s)	247, 547, 727, 767
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	507
Hpy99I	CGWCG	9 cut(s)	102, 332, 443, 467, 488, 557, 560, 563, 715
HpyAV	CCTTC	2 cut(s)	668, 870
HpyCH4III	ACNGT	5 cut(s)	328, 379, 484, 820, 836
HpyCH4IV	ACGT	5 cut(s)	315, 441, 594, 713, 758
HpyCH4V	TGCA	3 cut(s)	755, 784, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	306, 423, 701, 785
HpyF3I	CTNAG	3 cut(s)	536, 633, 664
HpySE526I	ACGT	5 cut(s)	315, 441, 594, 713, 758
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	208, 349, 630
HspAI	GCGC	1 cut(s)	794
Kzo9I	GATC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	713
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	5 cut(s)	315, 441, 594, 713, 758
MaeIII	GTNAC	4 cut(s)	5, 349, 688, 830
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	5 cut(s)	35, 193, 382, 397, 872
MhlI	GDGCHC	2 cut(s)	374, 846
MluCI	AATT	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	502
MseI	TTAA	1 cut(s)	886
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	9 cut(s)	272, 286, 395, 435, 445, 517, 581, 615, 621
MvaI	CCWGG	4 cut(s)	296, 422, 493, 522
MvnI	CGCG	3 cut(s)	198, 332, 413
MwoI	GCNNNNNNNGC	4 cut(s)	306, 423, 701, 785
NciI	CCSGG	8 cut(s)	272, 287, 395, 396, 435, 517, 581, 621
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	567
NlaIII	CATG	3 cut(s)	208, 349, 630
NlaIV	GGNNCC	2 cut(s)	276, 619
NmuCI	GTSAC	3 cut(s)	349, 688, 830
NruI	TCGCGA	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 558
PfeI	GAWTC	1 cut(s)	488
PflFI	GACNNNGTC	2 cut(s)	197, 272
PkrI	GCNGC	6 cut(s)	157, 160, 174, 361, 450, 703
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	846
Psp1406I	AACGTT	2 cut(s)	594, 758
Psp6I	CCWGG	4 cut(s)	294, 420, 491, 520
PspEI	GGTNACC	1 cut(s)	349
PspGI	CCWGG	4 cut(s)	294, 420, 491, 520
PspN4I	GGNNCC	2 cut(s)	276, 619
PspPI	GGNCC	8 cut(s)	240, 274, 283, 298, 415, 450, 617, 623
PstNI	CAGNNNCTG	2 cut(s)	219, 834
PsyI	GACNNNGTC	2 cut(s)	197, 272
RruI	TCGCGA	1 cut(s)	332
RsaI	GTAC	2 cut(s)	669, 716
RsaNI	GTAC	2 cut(s)	668, 715
SacI	GAGCTC	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	886
SatI	GCNGC	6 cut(s)	156, 159, 173, 360, 449, 702
Sau3AI	GATC	1 cut(s)	567
Sau96I	GGNCC	8 cut(s)	240, 274, 283, 298, 415, 450, 617, 623
ScaI	AGTACT	1 cut(s)	669
SchI	GAGTC	1 cut(s)	502
SduI	GDGCHC	2 cut(s)	374, 846
SfcI	CTRYAG	1 cut(s)	696
SfiI	GGCCNNNNNGGCC	1 cut(s)	306
SinI	GGWCC	3 cut(s)	240, 274, 617
SmaI	CCCGGG	1 cut(s)	396
Sse9I	AATT	1 cut(s)	401
SspMI	CTAG	1 cut(s)	876
SstI	GAGCTC	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	5 cut(s)	328, 379, 484, 820, 836
TaiI	ACGT	5 cut(s)	318, 444, 597, 716, 761
TaqI	TCGA	3 cut(s)	486, 576, 639
TasI	AATT	1 cut(s)	401
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	5 cut(s)	158, 161, 175, 362, 451
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	886
Tru9I	TTAA	1 cut(s)	886
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	3 cut(s)	349, 688, 830
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	3 cut(s)	349, 688, 830
TspDTI	ATGAA	1 cut(s)	193
TspMI	CCCGGG	1 cut(s)	394
TspRI	CASTG	1 cut(s)	835
Tth111I	GACNNNGTC	2 cut(s)	197, 272
VpaK11BI	GGWCC	3 cut(s)	240, 274, 617
XmaI	CCCGGG	1 cut(s)	394
XspI	CTAG	1 cut(s)	876
ZraI	GACGTC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.