Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

9789817 .. 9791286

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCCACCATCCCCTCCGTGGCTATCTCTCGGTTACCTCCAAAGCCCCAAATCAGATAAAAAAAAGAAGAAAAAAGACATCTCAATCTAACCCAACCGACCAAATGGGCTGCTCCGTAACTCCACCACTAGGTCCACCACCTCTTCTCTCCCGCCACCACCGCCAAAACCCGAACCCCATTACCCACCTGACCCGACGCTCCCTCCTCCTCTCTACCCCTCTCTCCTTAACCCTCAAACCCCCACCCTCCTCCGCCTCTCCCCCTCCTCCCCCGCCGCCCGACACCACCATCACCGACCGCGTCTTCATGGACTTCAGCCTCTGCCCCACCTACTTCCGCCCATTGTCCTCGCCCGACCCGAAACCCAACCTCTGCCCCGACTCCATCCCCCTCGGCCGGCTCGTCCTCGGCCTCTACGGCCACCTCGTCCCCCTCACCGTCGCCAATTTCAAGTCCATGTGCACCTCCTCCGCCTACAAGGGCACTCTCGTCCACAAGCTTTTCCCGGGCCAATTCTTCCTCGCCGGCCACCAGGGCGACAAGCCCGGAGACGTCCGCCGACCCTCCGGCCTTGCACGGAACACCGAGACCGTCGATTCAAAATCCTTCGCTCTCACCCACTCCCGCCCCGGCCTCCTCTCCCTCAACCTCTCCGAGAACGACGACGAGGACGACATCAAGCTGGACCCGGAATACCGAAATGTCGAATTCTTGATCACCACCGGACCCGGACCCTGCCCCGACCTCGATTACAAGAACATCGTCTTCGGCTCGGTGCTCGAAGGTATGGATGTTGTGACGGCCATAGCTGCCATACCAACGTTCAGGCCCTCGGAGAAGATACAGCAATTCAACGATTTTGCAGAGTTTTTGGGGGACGAGAGAGCTGGGAATGCTCGGGCTCTGTGGAATAAGCCTCTCAAAACCATTTATATCAGTGATTGCGGTGAGCTCAAGGTGGCAAAACCTTCCCTTTCTCCTAGTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

332

Amino Acids

36.23

Weight (kDa)

9.07

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	132 - 279	2.6e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	558
AccII	CGCG	1 cut(s)	303
AclI	AACGTT	1 cut(s)	824
AcoI	YGGCCR	4 cut(s)	397, 421, 529, 804
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	555
AfiI	CCNNNNNNNGG	3 cut(s)	20, 131, 399
AgsI	TTSAA	3 cut(s)	454, 603, 856
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	502, 685, 812, 890, 955
AluI	AGCT	5 cut(s)	502, 685, 812, 890, 955
Alw21I	GWGCWC	3 cut(s)	467, 783, 957
Alw26I	GTCTC	2 cut(s)	546, 584
Alw44I	GTGCAC	1 cut(s)	463
AlwNI	CAGNNNCTG	1 cut(s)	324
Ama87I	CYCGRG	2 cut(s)	508, 900
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	111, 812
ApoI	RAATTY	1 cut(s)	710
AspS9I	GGNCC	7 cut(s)	4, 134, 511, 688, 728, 734, 831
AsuC2I	CCSGG	6 cut(s)	509, 510, 549, 633, 692, 732
AsuHPI	GGTGA	5 cut(s)	286, 430, 610, 712, 962
AvaI	CYCGRG	2 cut(s)	508, 900
AvaII	GGWCC	4 cut(s)	134, 688, 728, 734
BaeGI	GKGCMC	2 cut(s)	467, 488
BanII	GRGCYC	2 cut(s)	907, 957
BbsI	GAAGAC	3 cut(s)	298, 760, 980
Bbv12I	GWGCWC	3 cut(s)	467, 783, 957
BbvI	GCAGC	2 cut(s)	98, 799
BccI	CCATC	3 cut(s)	18, 299, 395
BceAI	ACGGC	2 cut(s)	436, 819
BciT130I	CCWGG	1 cut(s)	536
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	6 cut(s)	509, 510, 549, 633, 692, 732
BcoDI	GTCTC	2 cut(s)	546, 584
BfaI	CTAG	2 cut(s)	131, 984
BglI	GCCNNNNNGGC	2 cut(s)	420, 537
BisI	GCNGC	3 cut(s)	112, 278, 813
BlsI	GCNGC	3 cut(s)	113, 279, 814
Bme1390I	CCNGG	7 cut(s)	509, 510, 536, 549, 633, 692, 732
Bme18I	GGWCC	4 cut(s)	134, 688, 728, 734
BmeT110I	CYCGRG	2 cut(s)	508, 900
BmgT120I	GGNCC	7 cut(s)	4, 134, 511, 688, 728, 734, 831
BmiI	GGNNCC	3 cut(s)	690, 730, 736
BmrFI	CCNGG	7 cut(s)	509, 510, 536, 549, 633, 692, 732
BpiI	GAAGAC	3 cut(s)	298, 760, 980
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	6 cut(s)	509, 510, 549, 633, 692, 732
BsaHI	GRCGYC	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	7 cut(s)	19, 394, 409, 508, 535, 631, 834
BsaWI	WCCGGW	1 cut(s)	725
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 131, 399
Bse118I	RCCGGY	2 cut(s)	399, 527
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	7 cut(s)	19, 394, 409, 508, 535, 631, 834
BseGI	GGATG	3 cut(s)	10, 387, 799
BseLI	CCNNNNNNNGG	3 cut(s)	20, 131, 399
BseRI	GAGGAG	6 cut(s)	197, 200, 241, 258, 460, 629
BseSI	GKGCMC	2 cut(s)	467, 488
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	98, 799
BseYI	CCCAGC	1 cut(s)	890
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	2 cut(s)	301, 400
BsiEI	CGRYCG	2 cut(s)	301, 400
BsiHKAI	GWGCWC	3 cut(s)	467, 783, 957
BsiHKCI	CYCGRG	2 cut(s)	508, 900
BsiSI	CCGG	9 cut(s)	400, 509, 528, 549, 570, 633, 692, 726, 732
BslFI	GGGAC	2 cut(s)	416, 893
BslI	CCNNNNNNNGG	3 cut(s)	20, 131, 399
BsmAI	GTCTC	2 cut(s)	546, 584
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	2 cut(s)	416, 893
BsmI	GAATGC	1 cut(s)	901
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	2 cut(s)	508, 900
Bsp1286I	GDGCHC	5 cut(s)	467, 488, 783, 907, 957
Bsp143I	GATC	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	690, 730, 736
BspTNI	GGTCTC	1 cut(s)	584
BsrFI	RCCGGY	2 cut(s)	399, 527
BssAI	RCCGGY	2 cut(s)	399, 527
BssECI	CCNNGG	7 cut(s)	19, 394, 409, 508, 535, 631, 834
BssMI	GATC	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	442, 595
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	401, 529
BstDSI	CCRYGG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	10, 387, 799
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	1 cut(s)	720
BstMAI	GTCTC	2 cut(s)	546, 584
BstMBI	GATC	1 cut(s)	717
BstMCI	CGRYCG	2 cut(s)	301, 400
BstMWI	GCNNNNNNNGC	5 cut(s)	162, 420, 537, 812, 896
BstNI	CCWGG	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	7 cut(s)	507, 508, 534, 547, 631, 690, 730
BstSLI	GKGCMC	2 cut(s)	467, 488
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	98, 799
BstV2I	GAAGAC	3 cut(s)	298, 760, 980
BstZI	CGGCCG	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	10, 387, 799
BtsIMutI	CAGTG	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	401, 529
CaiI	CAGNNNCTG	1 cut(s)	324
Cfr10I	RCCGGY	2 cut(s)	399, 527
Cfr13I	GGNCC	7 cut(s)	4, 134, 511, 688, 728, 734, 831
Cfr9I	CCCGGG	1 cut(s)	508
CseI	GACGC	2 cut(s)	207, 292
CviAII	CATG	2 cut(s)	310, 460
DpnI	GATC	1 cut(s)	719
DpnII	GATC	1 cut(s)	717
EaeI	YGGCCR	4 cut(s)	397, 421, 529, 804
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	4 cut(s)	244, 329, 463, 548
Ecl136II	GAGCTC	1 cut(s)	955
EclXI	CGGCCG	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	907, 957
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	4 cut(s)	134, 688, 728, 734
Eco52I	CGGCCG	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	1 cut(s)	301
Eco88I	CYCGRG	2 cut(s)	508, 900
Eco91I	GGTNACC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	955
EcoO109I	RGGNCCY	1 cut(s)	831
EcoO65I	GGTNACC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	907, 957
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	2 cut(s)	313, 463
FaiI	YATR	6 cut(s)	311, 461, 791, 809, 818, 936
FaqI	GGGAC	2 cut(s)	416, 893
FatI	CATG	2 cut(s)	309, 459
FauI	CCCGC	3 cut(s)	161, 282, 635
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	112, 278, 813
FokI	GGATG	2 cut(s)	374, 806
FriOI	GRGCYC	2 cut(s)	907, 957
Fsp4HI	GCNGC	3 cut(s)	112, 278, 813
FspBI	CTAG	2 cut(s)	131, 984
GluI	GCNGC	3 cut(s)	112, 278, 813
GsaI	CCCAGC	1 cut(s)	894
HapII	CCGG	9 cut(s)	400, 509, 528, 549, 570, 633, 692, 726, 732
HgaI	GACGC	2 cut(s)	207, 292
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	313, 463
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	2 cut(s)	383, 599
HpaII	CCGG	9 cut(s)	400, 509, 528, 549, 570, 633, 692, 726, 732
HphI	GGTGA	5 cut(s)	286, 430, 610, 712, 962
Hpy166II	GTNNAC	3 cut(s)	137, 465, 496
Hpy188I	TCNGA	3 cut(s)	57, 658, 838
Hpy188III	TCNNGA	1 cut(s)	715
Hpy8I	GTNNAC	3 cut(s)	137, 465, 496
Hpy99I	CGWCG	5 cut(s)	201, 446, 599, 668, 671
HpyAV	CCTTC	3 cut(s)	619, 779, 981
HpyCH4III	ACNGT	2 cut(s)	442, 595
HpyCH4IV	ACGT	2 cut(s)	555, 824
HpyCH4V	TGCA	3 cut(s)	465, 578, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	162, 420, 537, 812, 896
HpySE526I	ACGT	2 cut(s)	555, 824
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	313, 463
KroI	GCCGGC	2 cut(s)	399, 527
KroNI	GCCGGC	2 cut(s)	401, 529
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	119, 206
Lsp1109I	GCAGC	2 cut(s)	98, 799
MaeI	CTAG	2 cut(s)	131, 984
MaeII	ACGT	2 cut(s)	555, 824
MaeIII	GTNAC	3 cut(s)	34, 118, 799
MalI	GATC	1 cut(s)	719
MboI	GATC	1 cut(s)	717
MboII	GAAGA	7 cut(s)	81, 137, 298, 511, 760, 853, 980
MhlI	GDGCHC	5 cut(s)	467, 488, 783, 907, 957
MluCI	AATT	4 cut(s)	448, 515, 710, 851
MlyI	GAGTC	1 cut(s)	377
MroNI	GCCGGC	2 cut(s)	399, 527
MseI	TTAA	1 cut(s)	230
MspI	CCGG	9 cut(s)	400, 509, 528, 549, 570, 633, 692, 726, 732
MspR9I	CCNGG	7 cut(s)	509, 510, 536, 549, 633, 692, 732
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	5 cut(s)	162, 420, 537, 812, 896
NaeI	GCCGGC	2 cut(s)	401, 529
NciI	CCSGG	6 cut(s)	509, 510, 549, 633, 692, 732
NdeII	GATC	1 cut(s)	717
NgoMIV	GCCGGC	2 cut(s)	399, 527
NlaIII	CATG	2 cut(s)	313, 463
NlaIV	GGNNCC	3 cut(s)	690, 730, 736
NmeAIII	GCCGAG	2 cut(s)	375, 390
NmuCI	GTSAC	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	4 cut(s)	359, 402, 426, 672
PctI	GAATGC	1 cut(s)	901
PdiI	GCCGGC	2 cut(s)	401, 529
PfeI	GAWTC	1 cut(s)	599
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	113, 279, 814
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	957
Psp1406I	AACGTT	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	690, 730, 736
PspPI	GGNCC	7 cut(s)	4, 134, 511, 688, 728, 734, 831
PstNI	CAGNNNCTG	1 cut(s)	324
PsyI	GACNNNGTC	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	112, 278, 813
Sau3AI	GATC	1 cut(s)	717
Sau96I	GGNCC	7 cut(s)	4, 134, 511, 688, 728, 734, 831
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	7 cut(s)	509, 510, 536, 549, 633, 692, 732
SduI	GDGCHC	5 cut(s)	467, 488, 783, 907, 957
SfiI	GGCCNNNNNGGCC	1 cut(s)	420
SinI	GGWCC	4 cut(s)	134, 688, 728, 734
SmaI	CCCGGG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	4 cut(s)	448, 515, 710, 851
SspMI	CTAG	2 cut(s)	131, 984
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	7 cut(s)	507, 508, 534, 547, 631, 690, 730
TaaI	ACNGT	2 cut(s)	442, 595
TaiI	ACGT	2 cut(s)	558, 827
TaqI	TCGA	4 cut(s)	597, 708, 750, 783
TasI	AATT	4 cut(s)	448, 515, 710, 851
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	2 cut(s)	111, 812
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	3 cut(s)	8, 106, 595
TspMI	CCCGGG	1 cut(s)	508
TspRI	CASTG	1 cut(s)	946
Tth111I	GACNNNGTC	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	463
VpaK11BI	GGWCC	4 cut(s)	134, 688, 728, 734
XapI	RAATTY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmaI	CCCGGG	1 cut(s)	508
XspI	CTAG	2 cut(s)	131, 984
ZraI	GACGTC	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.