Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

21404056 .. 21405460

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G254600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGCTACTCTGTGACTACACCACCCGGTCCGCCACGCATTCTCTACAACCACCACCACCCGAACCCGAAGTCCATTACACACTTGACCCGACGCTCCCTCCTCCTCTCCGCCCCACTCTCCCTCACCCTCCAGCCACCACCATCGTCCGCTGCAGCATCTCCTCCGCCACCCGACACCACCATTACCGACCGCGTCTTCATGGACTTCAGTCTCTGCCCCACCTACTTCCGCCCCTTATCCTCAGCCGACTCAAAACCCACCCTCTGCCCCGACTCGGTCCCGCTGGGCCGGCTCGTCCTCGGCCTGTACGGCCACCACGTCCCCCTTACCGTCTCCAACTTCAAGTCCATGTGCACCTCCTCCGCCTACAAGGGCACTCTCGTCCACAAGCTTTTCCCCGGCCAATTCTTCCTCGCCGGCCACCAAGGCGACAAGCCCGGCGACGTCCGCCGCCCCACGGGTCTCGCCCGAAACACCGAGACCGTCGATTCCAAGGCCTTTGCTCTGACCCATTCCCGCCCCGGCCTCCTCTCCCTCAACCTCTCCGAGAACGACGACGAAGACGACATCAAGCTCGACCCGGATTACCGAAACGTCGAGTTCTTGATCACATCTGGGCCCGGCCCATGCCCCGACCTCGATTACAAGAACATCGTCTTCGGCTCAGTGCTCGAAGGTTTGGATGTTGTGACGGCCATTGCTGCTATACCTACATATAGACCATCTGAGAAAATACAGCAATTCAACGATTTTGCAGAATTTCTTGGGGATGAGAGAGCGATGAATGCTCGGGCTCTGTGGAACAAGCCTCTGAAAACAGTGTATATCAGTGACTGTGGTGAGCTTAATGTGGCAAAGCCTTCCCTTTCTCCTCCTAGTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

297

Amino Acids

32.25

Weight (kDa)

6.49

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	450
AccII	CGCG	1 cut(s)	195
AcoI	YGGCCR	4 cut(s)	313, 403, 421, 696
AcsI	RAATTY	1 cut(s)	761
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	277, 460
AgsI	TTSAA	2 cut(s)	346, 748
AjiI	CACGTC	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	394, 577, 847
AluI	AGCT	3 cut(s)	394, 577, 847
Alw21I	GWGCWC	2 cut(s)	359, 675
Alw26I	GTCTC	4 cut(s)	218, 340, 470, 476
Alw44I	GTGCAC	1 cut(s)	355
AlwNI	CAGNNNCTG	2 cut(s)	216, 837
Ama87I	CYCGRG	1 cut(s)	792
ApaI	GGGCCC	1 cut(s)	624
ApaLI	GTGCAC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	152, 155, 704
ApoI	RAATTY	1 cut(s)	761
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	6 cut(s)	29, 280, 289, 620, 621, 626
AsuC2I	CCSGG	6 cut(s)	27, 402, 441, 525, 584, 624
AsuHPI	GGTGA	2 cut(s)	118, 854
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	2 cut(s)	29, 280
BaeGI	GKGCMC	3 cut(s)	359, 380, 624
BanII	GRGCYC	2 cut(s)	624, 799
BbsI	GAAGAC	4 cut(s)	190, 570, 652, 875
Bbv12I	GWGCWC	2 cut(s)	359, 675
BbvCI	CCTCAGC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	139, 167, 691
BccI	CCATC	2 cut(s)	151, 733
BceAI	ACGGC	2 cut(s)	328, 711
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	6 cut(s)	27, 402, 441, 525, 584, 624
BcoDI	GTCTC	4 cut(s)	218, 340, 470, 476
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	153
BglI	GCCNNNNNGGC	2 cut(s)	312, 429
BisI	GCNGC	4 cut(s)	153, 156, 454, 705
BlsI	GCNGC	4 cut(s)	154, 157, 455, 706
Bme1390I	CCNGG	6 cut(s)	27, 402, 441, 525, 584, 624
Bme18I	GGWCC	2 cut(s)	29, 280
BmeT110I	CYCGRG	1 cut(s)	792
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	6 cut(s)	29, 280, 289, 620, 621, 626
BmiI	GGNNCC	2 cut(s)	282, 622
BmrFI	CCNGG	6 cut(s)	27, 402, 441, 525, 584, 624
BmsI	GCATC	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	210
BpiI	GAAGAC	4 cut(s)	190, 570, 652, 875
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	244
BpuMI	CCSGG	6 cut(s)	27, 402, 441, 525, 584, 624
BsaHI	GRCGYC	1 cut(s)	447
BsaI	GGTCTC	2 cut(s)	470, 476
BsaJI	CCNNGG	6 cut(s)	301, 400, 427, 459, 495, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 460
Bse118I	RCCGGY	2 cut(s)	291, 419
Bse3DI	GCAATG	1 cut(s)	699
BseDI	CCNNGG	6 cut(s)	301, 400, 427, 459, 495, 523
BseGI	GGATG	2 cut(s)	691, 778
BseLI	CCNNNNNNNGG	2 cut(s)	277, 460
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	258, 681, 720
BseRI	GAGGAG	6 cut(s)	92, 95, 153, 352, 521, 864
BseSI	GKGCMC	3 cut(s)	359, 380, 624
BseXI	GCAGC	3 cut(s)	139, 167, 691
BseYI	CCCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	2 cut(s)	359, 675
BsiHKCI	CYCGRG	1 cut(s)	792
BsiSI	CCGG	8 cut(s)	27, 292, 402, 420, 441, 525, 584, 624
BslFI	GGGAC	2 cut(s)	266, 308
BslI	CCNNNNNNNGG	2 cut(s)	277, 460
BsmAI	GTCTC	4 cut(s)	218, 340, 470, 476
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	266, 308
BsmI	GAATGC	2 cut(s)	39, 793
Bso31I	GGTCTC	2 cut(s)	470, 476
BsoBI	CYCGRG	1 cut(s)	792
Bsp120I	GGGCCC	1 cut(s)	620
Bsp1286I	GDGCHC	5 cut(s)	359, 380, 624, 675, 799
Bsp143I	GATC	1 cut(s)	609
BspCNI	CTCAG	3 cut(s)	257, 680, 721
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	282, 622
BspMAI	CTGCAG	1 cut(s)	157
BspTNI	GGTCTC	2 cut(s)	470, 476
BsrDI	GCAATG	1 cut(s)	699
BsrFI	RCCGGY	2 cut(s)	291, 419
BssAI	RCCGGY	2 cut(s)	291, 419
BssECI	CCNNGG	6 cut(s)	301, 400, 427, 459, 495, 523
BssMI	GATC	1 cut(s)	609
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	427, 495
Bst4CI	ACNGT	4 cut(s)	334, 487, 823, 839
BstACI	GRCGYC	1 cut(s)	447
BstC8I	GCNNGC	2 cut(s)	293, 421
BstDEI	CTNAG	3 cut(s)	244, 667, 729
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	691, 778
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	612
BstMAI	GTCTC	4 cut(s)	218, 340, 470, 476
BstMBI	GATC	1 cut(s)	609
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	6 cut(s)	292, 312, 429, 450, 704, 788
BstPAI	GACNNNNGTC	1 cut(s)	210
BstSCI	CCNGG	6 cut(s)	25, 400, 439, 523, 582, 622
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	3 cut(s)	359, 380, 624
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	139, 167, 691
BstV2I	GAAGAC	4 cut(s)	190, 570, 652, 875
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	797
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	691, 778
BtsIMutI	CAGTG	3 cut(s)	675, 828, 838
Cac8I	GCNNGC	2 cut(s)	293, 421
CaiI	CAGNNNCTG	2 cut(s)	216, 837
Cfr10I	RCCGGY	2 cut(s)	291, 419
Cfr13I	GGNCC	6 cut(s)	29, 280, 289, 620, 621, 626
CpoI	CGGWCCG	1 cut(s)	29
CseI	GACGC	2 cut(s)	102, 184
Csp6I	GTAC	1 cut(s)	310
CspI	CGGWCCG	1 cut(s)	29
CviAII	CATG	3 cut(s)	202, 352, 630
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	244, 667, 729
DpnI	GATC	1 cut(s)	611
DpnII	GATC	1 cut(s)	609
EaeI	YGGCCR	4 cut(s)	313, 403, 421, 696
EciI	GGCGGA	6 cut(s)	21, 100, 156, 221, 355, 440
Eco130I	CCWWGG	2 cut(s)	427, 495
Eco147I	AGGCCT	1 cut(s)	500
Eco24I	GRGCYC	2 cut(s)	624, 799
Eco31I	GGTCTC	2 cut(s)	470, 476
Eco47I	GGWCC	2 cut(s)	29, 280
Eco57I	CTGAAG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	792
EcoT14I	CCWWGG	2 cut(s)	427, 495
EcoT38I	GRGCYC	2 cut(s)	624, 799
ErhI	CCWWGG	2 cut(s)	427, 495
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	3 cut(s)	205, 355, 633
FaiI	YATR	7 cut(s)	203, 353, 631, 710, 718, 720, 828
FaqI	GGGAC	2 cut(s)	266, 308
FatI	CATG	3 cut(s)	201, 351, 629
FauI	CCCGC	2 cut(s)	291, 527
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	153, 156, 454, 705
FokI	GGATG	2 cut(s)	698, 785
FriOI	GRGCYC	2 cut(s)	624, 799
Fsp4HI	GCNGC	4 cut(s)	153, 156, 454, 705
FspBI	CTAG	1 cut(s)	879
GluI	GCNGC	4 cut(s)	153, 156, 454, 705
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	116
HapII	CCGG	8 cut(s)	27, 292, 402, 420, 441, 525, 584, 624
HgaI	GACGC	2 cut(s)	102, 184
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	205, 355, 633
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	251, 275, 491
HpaII	CCGG	8 cut(s)	27, 292, 402, 420, 441, 525, 584, 624
HphI	GGTGA	2 cut(s)	118, 854
Hpy166II	GTNNAC	2 cut(s)	357, 388
Hpy188I	TCNGA	4 cut(s)	510, 550, 730, 816
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	2 cut(s)	357, 388
Hpy99I	CGWCG	6 cut(s)	96, 449, 491, 560, 563, 602
HpyAV	CCTTC	2 cut(s)	671, 873
HpyCH4III	ACNGT	4 cut(s)	334, 487, 823, 839
HpyCH4IV	ACGT	3 cut(s)	321, 447, 597
HpyCH4V	TGCA	3 cut(s)	155, 357, 758
HpyF10VI	GCNNNNNNNGC	6 cut(s)	292, 312, 429, 450, 704, 788
HpyF3I	CTNAG	3 cut(s)	244, 667, 729
HpySE526I	ACGT	3 cut(s)	321, 447, 597
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	205, 355, 633
KroI	GCCGGC	2 cut(s)	291, 419
KroNI	GCCGGC	2 cut(s)	293, 421
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	3 cut(s)	139, 167, 691
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	3 cut(s)	321, 447, 597
MaeIII	GTNAC	3 cut(s)	13, 691, 833
MalI	GATC	1 cut(s)	611
MboI	GATC	1 cut(s)	609
MboII	GAAGA	5 cut(s)	190, 403, 575, 652, 875
MhlI	GDGCHC	5 cut(s)	359, 380, 624, 675, 799
MluCI	AATT	3 cut(s)	407, 743, 761
MlyI	GAGTC	2 cut(s)	245, 269
MmeI	TCCRAC	1 cut(s)	363
MroNI	GCCGGC	2 cut(s)	291, 419
MseI	TTAA	2 cut(s)	849, 889
MspA1I	CMGCKG	2 cut(s)	152, 286
MspI	CCGG	8 cut(s)	27, 292, 402, 420, 441, 525, 584, 624
MspR9I	CCNGG	6 cut(s)	27, 402, 441, 525, 584, 624
Mva1269I	GAATGC	2 cut(s)	39, 793
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	6 cut(s)	292, 312, 429, 450, 704, 788
NaeI	GCCGGC	2 cut(s)	293, 421
NciI	CCSGG	6 cut(s)	27, 402, 441, 525, 584, 624
NdeII	GATC	1 cut(s)	609
NgoMIV	GCCGGC	2 cut(s)	291, 419
NlaIII	CATG	3 cut(s)	205, 355, 633
NlaIV	GGNNCC	2 cut(s)	282, 622
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	3 cut(s)	13, 691, 833
PceI	AGGCCT	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 564
PctI	GAATGC	2 cut(s)	39, 793
PdiI	GCCGGC	2 cut(s)	293, 421
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	2 cut(s)	194, 278
PkrI	GCNGC	4 cut(s)	154, 157, 455, 706
PleI	GAGTC	2 cut(s)	245, 269
PpsI	GAGTC	2 cut(s)	245, 269
PshAI	GACNNNNGTC	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	282, 622
PspOMI	GGGCCC	1 cut(s)	620
PspPI	GGNCC	6 cut(s)	29, 280, 289, 620, 621, 626
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	2 cut(s)	216, 837
PsyI	GACNNNGTC	2 cut(s)	194, 278
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
Rsr2I	CGGWCCG	1 cut(s)	29
RsrII	CGGWCCG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	849, 889
SatI	GCNGC	4 cut(s)	153, 156, 454, 705
Sau3AI	GATC	1 cut(s)	609
Sau96I	GGNCC	6 cut(s)	29, 280, 289, 620, 621, 626
SchI	GAGTC	2 cut(s)	245, 269
ScrFI	CCNGG	6 cut(s)	27, 402, 441, 525, 584, 624
SduI	GDGCHC	5 cut(s)	359, 380, 624, 675, 799
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	153
SfiI	GGCCNNNNNGGCC	1 cut(s)	312
SinI	GGWCC	2 cut(s)	29, 280
Sse9I	AATT	3 cut(s)	407, 743, 761
SseBI	AGGCCT	1 cut(s)	500
SspMI	CTAG	1 cut(s)	879
StuI	AGGCCT	1 cut(s)	500
StyD4I	CCNGG	6 cut(s)	25, 400, 439, 523, 582, 622
StyI	CCWWGG	2 cut(s)	427, 495
TaaI	ACNGT	4 cut(s)	334, 487, 823, 839
TaiI	ACGT	3 cut(s)	324, 450, 600
TaqI	TCGA	5 cut(s)	489, 579, 600, 642, 675
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	407, 743, 761
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	849, 889
Tru9I	TTAA	2 cut(s)	849, 889
TscAI	CASTG	3 cut(s)	675, 828, 838
TseFI	GTSAC	3 cut(s)	13, 691, 833
TseI	GCWGC	3 cut(s)	152, 155, 704
Tsp45I	GTSAC	3 cut(s)	13, 691, 833
TspDTI	ATGAA	2 cut(s)	190, 800
TspRI	CASTG	3 cut(s)	675, 828, 838
Tth111I	GACNNNGTC	2 cut(s)	194, 278
VneI	GTGCAC	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	29, 280
XapI	RAATTY	1 cut(s)	761
XspI	CTAG	1 cut(s)	879
ZraI	GACGTC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.