Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

11942332 .. 11943944

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1159700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGCTGCTCCGTAACTCCACCACCAGGTCCACCACCCCTTCTCTCCTGCCACCACCGCCAAAACCGGAACACCATTGCCCACCTGACCCGACGCTCCCTCCTCCTCTCTACCCCTCTCTCCTTAACCCTCAAACCCCCACCCTCCTCCGCCTCCCCCCCTCCTCCCCCGCCGCCCGACACCACCATCACTGACCGCGTCTTCATGGACTTCAGCCTCTGCCCCACCTACTTCCGCCCATTGTCCTCGCCCGACCCGAAACCCAACCTCTGCCCCGACTCCATCCCCCTCGGCCGGCTCGTCCTCGGCCTCTACGGCCACCTCGTCCCCCTCACCGTCGCCAATTTCAAGTCCATGTGCACCTCCTCCGCCTACAAGGGCACTCTCGTCCACAAGCTTTTCCCGGGTCAATTCTTCCTCGCCGGCCACCAGGGCGACAAGCCCGGAGACGTCCGCCGATCCTCCGGCCTTGCCCGGAACACCGAGACCGTCGATTCAAAATCCTTCGCTCTCACCCACTCCCGCCCCGGCCTCCTCTCCCTCAACCTCTCCGAGAACGACGACGAGGACGACATCAAGCTGGACCCGGAATACCGAAATGTCGAATTCTTGATCACCACCGGACCCGGACCCTGCCCCGACCTCGATTACAAGAACATCGTCTTCGGCTCGGTGCTTGAAGGTATGGATGTTGTGACGGCCATAGCTTCCATACCAACGTACAGGCCCTCGGAGAAGATACAGCAATTCAACGATTTTGCAGAGTTTTTGGGGGACGAGAGAGCTGGGAATGCTCGGGCTCTGTGGAATAAGCCTCTCAAAACCATTTATATCAGTGATTGCGGTGAGCTCAAGGTGGCAAAACCTTCCCTTTCTCCTAGTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

297

Amino Acids

32.23

Weight (kDa)

7.03

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	97 - 245	8.5e-21	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	453
AccII	CGCG	1 cut(s)	198
AclWI	GGATC	1 cut(s)	453
AcoI	YGGCCR	4 cut(s)	292, 316, 424, 699
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	26, 294
AgsI	TTSAA	4 cut(s)	349, 498, 680, 751
AjnI	CCWGG	2 cut(s)	25, 429
AluBI	AGCT	5 cut(s)	397, 580, 707, 785, 850
AluI	AGCT	5 cut(s)	397, 580, 707, 785, 850
Alw21I	GWGCWC	2 cut(s)	362, 852
Alw26I	GTCTC	2 cut(s)	441, 479
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	453
AlwNI	CAGNNNCTG	1 cut(s)	219
Ama87I	CYCGRG	2 cut(s)	403, 795
AoxI	GGCC	8 cut(s)	292, 307, 316, 424, 466, 529, 699, 725
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	5 cut(s)	29, 583, 623, 629, 726
AsuC2I	CCSGG	7 cut(s)	404, 405, 444, 475, 528, 587, 627
AsuHPI	GGTGA	4 cut(s)	325, 505, 607, 857
AvaI	CYCGRG	2 cut(s)	403, 795
AvaII	GGWCC	4 cut(s)	29, 583, 623, 629
BaeGI	GKGCMC	2 cut(s)	362, 383
BanII	GRGCYC	2 cut(s)	802, 852
BbsI	GAAGAC	3 cut(s)	193, 655, 875
Bbv12I	GWGCWC	2 cut(s)	362, 852
BccI	CCATC	2 cut(s)	194, 290
BceAI	ACGGC	2 cut(s)	331, 714
BciT130I	CCWGG	2 cut(s)	27, 431
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	7 cut(s)	404, 405, 444, 475, 528, 587, 627
BcoDI	GTCTC	2 cut(s)	441, 479
BfaI	CTAG	1 cut(s)	879
BglI	GCCNNNNNGGC	2 cut(s)	315, 432
BisI	GCNGC	2 cut(s)	7, 173
BlsI	GCNGC	2 cut(s)	8, 174
Bme1390I	CCNGG	9 cut(s)	27, 404, 405, 431, 444, 475, 528, 587, 627
Bme18I	GGWCC	4 cut(s)	29, 583, 623, 629
BmeT110I	CYCGRG	2 cut(s)	403, 795
BmgT120I	GGNCC	5 cut(s)	29, 583, 623, 629, 726
BmiI	GGNNCC	3 cut(s)	585, 625, 631
BmrFI	CCNGG	9 cut(s)	27, 404, 405, 431, 444, 475, 528, 587, 627
BpiI	GAAGAC	3 cut(s)	193, 655, 875
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	7 cut(s)	404, 405, 444, 475, 528, 587, 627
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	6 cut(s)	289, 304, 403, 430, 526, 729
BsaWI	WCCGGW	2 cut(s)	66, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 294
Bse118I	RCCGGY	2 cut(s)	294, 422
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	27, 431
BseDI	CCNNGG	6 cut(s)	289, 304, 403, 430, 526, 729
BseGI	GGATG	2 cut(s)	282, 694
BseLI	CCNNNNNNNGG	2 cut(s)	26, 294
BseMI	GCAATG	1 cut(s)	75
BseRI	GAGGAG	6 cut(s)	92, 95, 136, 153, 355, 524
BseSI	GKGCMC	2 cut(s)	362, 383
BseX3I	CGGCCG	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	8 cut(s)	294, 309, 318, 426, 468, 531, 701, 727
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	362, 852
BsiHKCI	CYCGRG	2 cut(s)	403, 795
BslFI	GGGAC	2 cut(s)	311, 788
BslI	CCNNNNNNNGG	2 cut(s)	26, 294
BsmAI	GTCTC	2 cut(s)	441, 479
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	311, 788
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	8 cut(s)	294, 309, 318, 426, 468, 531, 701, 727
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	2 cut(s)	403, 795
Bsp1286I	GDGCHC	4 cut(s)	362, 383, 802, 852
Bsp143I	GATC	2 cut(s)	458, 612
BspANI	GGCC	8 cut(s)	294, 309, 318, 426, 468, 531, 701, 727
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	585, 625, 631
BspPI	GGATC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	294, 422
BssAI	RCCGGY	2 cut(s)	294, 422
BssECI	CCNNGG	6 cut(s)	289, 304, 403, 430, 526, 729
BssMI	GATC	2 cut(s)	458, 612
BssNI	GRCGYC	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	27, 431
Bst4CI	ACNGT	2 cut(s)	337, 490
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	296, 424
BstF5I	GGATG	2 cut(s)	282, 694
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	461, 615
BstMAI	GTCTC	2 cut(s)	441, 479
BstMBI	GATC	2 cut(s)	458, 612
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 315, 432, 791
BstNI	CCWGG	2 cut(s)	27, 431
BstSCI	CCNGG	9 cut(s)	25, 402, 403, 429, 442, 473, 526, 585, 625
BstSLI	GKGCMC	2 cut(s)	362, 383
BstUI	CGCG	1 cut(s)	198
BstV2I	GAAGAC	3 cut(s)	193, 655, 875
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	8 cut(s)	294, 309, 318, 426, 468, 531, 701, 727
BtsCI	GGATG	2 cut(s)	282, 694
BtsIMutI	CAGTG	2 cut(s)	189, 841
Cac8I	GCNNGC	2 cut(s)	296, 424
CaiI	CAGNNNCTG	1 cut(s)	219
Cfr10I	RCCGGY	2 cut(s)	294, 422
Cfr13I	GGNCC	5 cut(s)	29, 583, 623, 629, 726
Cfr9I	CCCGGG	1 cut(s)	403
CseI	GACGC	2 cut(s)	102, 187
CsiI	ACCWGGT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	2 cut(s)	205, 355
CviQI	GTAC	1 cut(s)	721
DpnI	GATC	2 cut(s)	460, 614
DpnII	GATC	2 cut(s)	458, 612
EaeI	YGGCCR	4 cut(s)	292, 316, 424, 699
EagI	CGGCCG	1 cut(s)	292
EciI	GGCGGA	4 cut(s)	139, 224, 358, 443
Ecl136II	GAGCTC	1 cut(s)	850
EclXI	CGGCCG	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	802, 852
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	4 cut(s)	29, 583, 623, 629
Eco52I	CGGCCG	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	196
Eco88I	CYCGRG	2 cut(s)	403, 795
EcoICRI	GAGCTC	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	726
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	25, 429
EcoT38I	GRGCYC	2 cut(s)	802, 852
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	2 cut(s)	208, 358
FaiI	YATR	6 cut(s)	206, 356, 686, 704, 713, 831
FaqI	GGGAC	2 cut(s)	311, 788
FatI	CATG	2 cut(s)	204, 354
FauI	CCCGC	2 cut(s)	177, 530
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	7, 173
FokI	GGATG	2 cut(s)	269, 701
FriOI	GRGCYC	2 cut(s)	802, 852
Fsp4HI	GCNGC	2 cut(s)	7, 173
FspBI	CTAG	1 cut(s)	879
GluI	GCNGC	2 cut(s)	7, 173
GsaI	CCCAGC	1 cut(s)	789
HaeIII	GGCC	8 cut(s)	294, 309, 318, 426, 468, 531, 701, 727
HgaI	GACGC	2 cut(s)	102, 187
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	208, 358
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	278, 494
HphI	GGTGA	4 cut(s)	325, 505, 607, 857
Hpy166II	GTNNAC	3 cut(s)	32, 360, 391
Hpy188I	TCNGA	2 cut(s)	553, 733
Hpy188III	TCNNGA	1 cut(s)	610
Hpy8I	GTNNAC	3 cut(s)	32, 360, 391
Hpy99I	CGWCG	5 cut(s)	96, 341, 494, 563, 566
HpyAV	CCTTC	4 cut(s)	50, 514, 674, 876
HpyCH4III	ACNGT	2 cut(s)	337, 490
HpyCH4IV	ACGT	2 cut(s)	450, 719
HpyCH4V	TGCA	2 cut(s)	360, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 315, 432, 791
HpySE526I	ACGT	2 cut(s)	450, 719
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	208, 358
KroI	GCCGGC	2 cut(s)	294, 422
KroNI	GCCGGC	2 cut(s)	296, 424
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	2 cut(s)	458, 612
LmnI	GCTCC	2 cut(s)	14, 101
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	2 cut(s)	450, 719
MaeIII	GTNAC	2 cut(s)	13, 694
MalI	GATC	2 cut(s)	460, 614
MboI	GATC	2 cut(s)	458, 612
MboII	GAAGA	5 cut(s)	193, 406, 655, 748, 875
MhlI	GDGCHC	4 cut(s)	362, 383, 802, 852
MluCI	AATT	4 cut(s)	343, 410, 605, 746
MlyI	GAGTC	1 cut(s)	272
MroNI	GCCGGC	2 cut(s)	294, 422
MseI	TTAA	1 cut(s)	125
MspR9I	CCNGG	9 cut(s)	27, 404, 405, 431, 444, 475, 528, 587, 627
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	2 cut(s)	27, 431
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	57, 315, 432, 791
NaeI	GCCGGC	2 cut(s)	296, 424
NciI	CCSGG	7 cut(s)	404, 405, 444, 475, 528, 587, 627
NdeII	GATC	2 cut(s)	458, 612
NgoMIV	GCCGGC	2 cut(s)	294, 422
NlaIII	CATG	2 cut(s)	208, 358
NlaIV	GGNNCC	3 cut(s)	585, 625, 631
NmeAIII	GCCGAG	2 cut(s)	270, 285
NmuCI	GTSAC	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	4 cut(s)	254, 297, 321, 567
PctI	GAATGC	1 cut(s)	796
PdiI	GCCGGC	2 cut(s)	296, 424
PfeI	GAWTC	1 cut(s)	494
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	8, 174
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	25, 429
PspFI	CCCAGC	1 cut(s)	785
PspGI	CCWGG	2 cut(s)	25, 429
PspN4I	GGNNCC	3 cut(s)	585, 625, 631
PspPI	GGNCC	5 cut(s)	29, 583, 623, 629, 726
PstNI	CAGNNNCTG	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SacI	GAGCTC	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	7, 173
Sau3AI	GATC	2 cut(s)	458, 612
Sau96I	GGNCC	5 cut(s)	29, 583, 623, 629, 726
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	9 cut(s)	27, 404, 405, 431, 444, 475, 528, 587, 627
SduI	GDGCHC	4 cut(s)	362, 383, 802, 852
SexAI	ACCWGGT	1 cut(s)	25
SfiI	GGCCNNNNNGGCC	1 cut(s)	315
SinI	GGWCC	4 cut(s)	29, 583, 623, 629
SmaI	CCCGGG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	4 cut(s)	343, 410, 605, 746
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	9 cut(s)	25, 402, 403, 429, 442, 473, 526, 585, 625
TaaI	ACNGT	2 cut(s)	337, 490
TaiI	ACGT	2 cut(s)	453, 722
TaqI	TCGA	3 cut(s)	492, 603, 645
TasI	AATT	4 cut(s)	343, 410, 605, 746
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	196, 841
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	1 cut(s)	193
TspMI	CCCGGG	1 cut(s)	403
TspRI	CASTG	2 cut(s)	196, 841
Tth111I	GACNNNGTC	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	4 cut(s)	29, 583, 623, 629
XapI	RAATTY	1 cut(s)	605
XmaI	CCCGGG	1 cut(s)	403
XspI	CTAG	1 cut(s)	879
ZraI	GACGTC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.