Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Reverse (-)

33108372 .. 33109112

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACACCATCACCCACTCCTCCACCTCTTCTCCACCTGAACCCGAACCCTAAGCCTAAACCCAATGCCCTTTCCCTTACTCGATGCTCCCTCCTCTTCTCCTCCACCTCACTCTCCCTCCCCACCCTCCCCTACTCTGCAGCCTTCCCGTCGCAGCTCGACATCACCATCACTAACCGCGTCTTCATGGACTTCAACCTTTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCTTCGAGATAGCCCCACGGGATTGGGTCGCCCTGGGCCTCTACTGCCACCTCGTCCCTATCACCGTCGCGAATTCAAGGCCATGGTGTTTAATCGCACACCACTACCACCAAATCTGCGAGGTTCAAACTAAAATGGAGGTTGAGGACTACAACTTCAACATGGGCAGCTGGATCCTGATGCGTTTCACCAATCCGACGAGCAAGGAGCACCTAGAGATTCGCCAAATCACAGTCGCCATGGCCCATGACTTGATAGCTCAGAAGGTTCCTCCCTTCACTGTTGCCTACTTGGTGGCCACATGTTTTTCTCTGTCCCAGCTCCGGTCCTCTCGAGCCTCACTTGATCGAGGCCCTCTTCACAATTCTCTCTGTCATCATTCCACAAGTCTCAATTTGTTTCACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

218

Amino Acids

24.59

Weight (kDa)

8.11

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_RRP12_N	PF25772	126 - 194	6.9e-08	RRP12-like, N-terminal HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 314
AciI	CCGC	2 cut(s)	178, 217
AclWI	GGATC	2 cut(s)	412, 425
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	196, 321, 371, 403
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	157, 414, 503, 565
AluI	AGCT	4 cut(s)	157, 414, 503, 565
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	2 cut(s)	412, 425
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	5 cut(s)	280, 323, 486, 540, 595
ApeKI	GCWGC	3 cut(s)	140, 154, 411
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	5 cut(s)	222, 280, 487, 570, 596
AsuHPI	GGTGA	4 cut(s)	3, 157, 298, 424
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	2 cut(s)	222, 570
BalI	TGGCCA	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	152, 166, 423
BccI	CCATC	2 cut(s)	16, 176
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	141, 155, 412
BlsI	GCNGC	3 cut(s)	142, 156, 413
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	2 cut(s)	222, 570
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	5 cut(s)	222, 280, 487, 570, 596
BmiI	GGNNCC	2 cut(s)	419, 513
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	74, 414
BpiI	GAAGAC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	5 cut(s)	260, 276, 277, 326, 483
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 102, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	5 cut(s)	260, 276, 277, 326, 483
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	518
BseRI	GAGGAG	3 cut(s)	9, 83, 91
BseXI	GCAGC	3 cut(s)	152, 166, 423
BseYI	CCCAGC	1 cut(s)	561
Bsh1236I	CGCG	2 cut(s)	180, 314
BshFI	GGCC	5 cut(s)	282, 325, 488, 542, 597
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	568
BslFI	GGGAC	2 cut(s)	284, 544
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	1 cut(s)	638
BsmFI	GGGAC	2 cut(s)	284, 544
BsnI	GGCC	5 cut(s)	282, 325, 488, 542, 597
BsoBI	CYCGRG	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	417, 589
Bsp19I	CCATGG	2 cut(s)	326, 483
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	2 cut(s)	178, 217
BspANI	GGCC	5 cut(s)	282, 325, 488, 542, 597
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	2 cut(s)	180, 314
BspLI	GGNNCC	2 cut(s)	419, 513
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	2 cut(s)	412, 425
BssECI	CCNNGG	5 cut(s)	260, 276, 277, 326, 483
BssMI	GATC	2 cut(s)	417, 589
BssT1I	CCWWGG	2 cut(s)	326, 483
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	4 cut(s)	310, 478, 526, 650
Bst6I	CTCTTC	3 cut(s)	33, 101, 606
BstDEI	CTNAG	2 cut(s)	51, 504
BstDSI	CCRYGG	3 cut(s)	260, 326, 483
BstFNI	CGCG	2 cut(s)	180, 314
BstKTI	GATC	2 cut(s)	420, 592
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	2 cut(s)	417, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	180, 314
BstV1I	GCAGC	3 cut(s)	152, 166, 423
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	5 cut(s)	282, 325, 488, 542, 597
BtgI	CCRYGG	3 cut(s)	260, 326, 483
BtsIMutI	CAGTG	2 cut(s)	522, 646
BtuMI	TCGCGA	1 cut(s)	314
Cfr13I	GGNCC	5 cut(s)	222, 280, 487, 570, 596
CseI	GACGC	1 cut(s)	169
CviAII	CATG	6 cut(s)	187, 327, 406, 484, 491, 546
DdeI	CTNAG	2 cut(s)	51, 504
DpnI	GATC	2 cut(s)	419, 591
DpnII	GATC	2 cut(s)	417, 589
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	3 cut(s)	33, 101, 606
EarI	CTCTTC	3 cut(s)	33, 101, 606
Eco130I	CCWWGG	2 cut(s)	326, 483
Eco47I	GGWCC	2 cut(s)	222, 570
Eco88I	CYCGRG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	326, 483
ErhI	CCWWGG	2 cut(s)	326, 483
FaeI	CATG	6 cut(s)	190, 330, 409, 487, 494, 549
FaiI	YATR	6 cut(s)	188, 328, 407, 485, 492, 547
FaqI	GGGAC	2 cut(s)	284, 544
FatI	CATG	6 cut(s)	186, 326, 405, 483, 490, 545
Fnu4HI	GCNGC	3 cut(s)	141, 155, 412
Fsp4HI	GCNGC	3 cut(s)	141, 155, 412
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	3 cut(s)	141, 155, 412
GsaI	CCCAGC	1 cut(s)	565
HaeIII	GGCC	5 cut(s)	282, 325, 488, 542, 597
HapII	CCGG	1 cut(s)	568
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	6 cut(s)	190, 330, 409, 487, 494, 549
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	568
HphI	GGTGA	4 cut(s)	3, 157, 298, 424
Hpy188I	TCNGA	3 cut(s)	229, 441, 507
Hpy188III	TCNNGA	4 cut(s)	250, 313, 421, 576
Hpy99I	CGWCG	3 cut(s)	154, 314, 445
HpyAV	CCTTC	3 cut(s)	154, 502, 529
HpyCH4III	ACNGT	4 cut(s)	310, 478, 526, 650
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	2 cut(s)	51, 504
Hsp92II	CATG	6 cut(s)	190, 330, 409, 487, 494, 549
Kzo9I	GATC	2 cut(s)	417, 589
LmnI	GCTCC	3 cut(s)	92, 451, 570
LpnPI	CCDG	8 cut(s)	50, 205, 263, 290, 400, 434, 575, 581
Lsp1109I	GCAGC	3 cut(s)	152, 166, 423
LweI	GCATC	2 cut(s)	74, 414
MaeI	CTAG	1 cut(s)	458
MalI	GATC	2 cut(s)	419, 591
MboI	GATC	2 cut(s)	417, 589
MboII	GAAGA	4 cut(s)	20, 88, 175, 593
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	3 cut(s)	316, 607, 637
MluNI	TGGCCA	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	464
Mox20I	TGGCCA	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	219, 414
MspI	CCGG	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	180, 314
MwoI	GCNNNNNNNGC	1 cut(s)	288
NcoI	CCATGG	2 cut(s)	326, 483
NdeII	GATC	2 cut(s)	417, 589
NlaIII	CATG	6 cut(s)	190, 330, 409, 487, 494, 549
NlaIV	GGNNCC	2 cut(s)	419, 513
NruI	TCGCGA	1 cut(s)	314
NspI	RCATGY	1 cut(s)	549
PaeR7I	CTCGAG	1 cut(s)	576
PasI	CCCWGGG	1 cut(s)	277
PciI	ACATGT	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	142, 156, 413
PscI	ACATGT	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	419, 513
PspPI	GGNCC	5 cut(s)	222, 280, 487, 570, 596
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	414
RruI	TCGCGA	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	3 cut(s)	141, 155, 412
Sau3AI	GATC	2 cut(s)	417, 589
Sau96I	GGNCC	5 cut(s)	222, 280, 487, 570, 596
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	74, 414
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	222, 570
SlaI	CTCGAG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	316, 607, 637
SsiI	CCGC	2 cut(s)	178, 217
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	326, 483
TaaI	ACNGT	4 cut(s)	310, 478, 526, 650
TaqI	TCGA	5 cut(s)	82, 159, 249, 577, 592
TasI	AATT	3 cut(s)	316, 607, 637
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	529, 653
TseI	GCWGC	3 cut(s)	140, 154, 411
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	529, 653
VpaK11BI	GGWCC	2 cut(s)	222, 570
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	549
XhoI	CTCGAG	1 cut(s)	576
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.