Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

56043316 .. 56044239

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0468100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACCTCACACCACCGGACCTGAACCCAGCCAAGAGGTCGAGGCCAAACAGCCCCAAGCTACCAGATTATGCAATTGATATCATGCGCCATGTAGATATCAATGAACGAAGACTCTATTGCAAAAGGGCAGAGGAGATCAAAAACAGGTGGCTGGAAGGGATGGGGAAAATTGCTTCTTATTATCCAAAGGAAGTCTTACACAGTGGGCCAAAATTTGATCCTTCAAAACCTTTACCAAAGGGATATGCATGGACTTCTTACCGCCCTAAGAGTGACCATAAAGCTTTTGCTGTTAAGATGCATTGCATTGGTTGCGGCCTGGGTTTGGATCACTGGCCTGATGACTGCCCAGAAAAGGGTACTGAAGAGTACGAGAGGAATTTCGCCATACTTCTTGAGCCTAATTCTGATTCTGATGATGATGATGAGACCGAGACCAAGACCAAGGCCAAGACTGTGACCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

156

Amino Acids

17.88

Weight (kDa)

6.21

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	265, 318
AclWI	GGATC	2 cut(s)	215, 339
AcsI	RAATTY	2 cut(s)	215, 382
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	364, 374
AfiI	CCNNNNNNNGG	3 cut(s)	328, 358, 359
AgsI	TTSAA	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	61, 287
AluI	AGCT	2 cut(s)	61, 287
Alw26I	GTCTC	2 cut(s)	425, 431
AlwI	GGATC	2 cut(s)	215, 339
AoxI	GGCC	5 cut(s)	44, 209, 319, 338, 450
ApoI	RAATTY	2 cut(s)	215, 382
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	4, 19, 209
AvaII	GGWCC	2 cut(s)	4, 19
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	425, 431
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	4, 19
BmgT120I	GGNCC	3 cut(s)	4, 19, 209
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	2 cut(s)	425, 431
BsaJI	CCNNGG	2 cut(s)	322, 447
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 358, 359
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	322, 447
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	328, 358, 359
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	5 cut(s)	46, 211, 321, 340, 452
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	328, 358, 359
BsmAI	GTCTC	2 cut(s)	425, 431
BsnI	GGCC	5 cut(s)	46, 211, 321, 340, 452
Bso31I	GGTCTC	2 cut(s)	425, 431
Bsp143I	GATC	3 cut(s)	138, 220, 331
BspACI	CCGC	2 cut(s)	265, 318
BspANI	GGCC	5 cut(s)	46, 211, 321, 340, 452
BspPI	GGATC	2 cut(s)	215, 339
BspTNI	GGTCTC	2 cut(s)	425, 431
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	322, 447
BssMI	GATC	3 cut(s)	138, 220, 331
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	206, 460, 466
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	141, 223, 334
BstMAI	GTCTC	2 cut(s)	425, 431
BstMBI	GATC	3 cut(s)	138, 220, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	5 cut(s)	46, 211, 321, 340, 452
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	211, 334
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	4, 19, 209
Csp6I	GTAC	2 cut(s)	363, 373
CviAII	CATG	3 cut(s)	85, 92, 252
CviQI	GTAC	2 cut(s)	363, 373
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	140, 222, 333
DpnII	GATC	3 cut(s)	138, 220, 331
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	2 cut(s)	425, 431
Eco32I	GATATC	2 cut(s)	82, 100
Eco47I	GGWCC	2 cut(s)	4, 19
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	2 cut(s)	82, 100
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	2 cut(s)	253, 306
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	88, 95, 255
FaiI	YATR	7 cut(s)	72, 86, 93, 249, 253, 282, 392
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	3 cut(s)	84, 91, 251
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	319
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	319
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	5 cut(s)	46, 211, 321, 340, 452
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	88, 95, 255
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	2 cut(s)	114, 413
HpaII	CCGG	1 cut(s)	17
Hpy188I	TCNGA	2 cut(s)	412, 418
Hpy188III	TCNNGA	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	152, 234
HpyCH4III	ACNGT	3 cut(s)	206, 460, 466
HpyCH4V	TGCA	5 cut(s)	74, 123, 251, 304, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	88, 95, 255
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	138, 220, 331
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	275, 460
MalI	GATC	3 cut(s)	140, 222, 333
MboI	GATC	3 cut(s)	138, 220, 331
MboII	GAAGA	2 cut(s)	123, 380
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	5 cut(s)	75, 171, 215, 382, 406
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	17, 30, 36, 127, 372
Mph1103I	ATGCAT	2 cut(s)	253, 306
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeII	GATC	3 cut(s)	138, 220, 331
NlaIII	CATG	3 cut(s)	88, 95, 255
NmuCI	GTSAC	2 cut(s)	275, 460
NsiI	ATGCAT	2 cut(s)	253, 306
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	3 cut(s)	4, 19, 209
RsaI	GTAC	2 cut(s)	364, 374
RsaNI	GTAC	2 cut(s)	363, 373
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	138, 220, 331
Sau96I	GGNCC	3 cut(s)	4, 19, 209
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	7 cut(s)	9, 24, 41, 63, 152, 235, 289
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	2 cut(s)	4, 19
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	75, 171, 215, 382, 406
SsiI	CCGC	2 cut(s)	265, 318
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	206, 460, 466
TaqI	TCGA	1 cut(s)	41
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	5 cut(s)	75, 171, 215, 382, 406
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	211, 341
TseFI	GTSAC	2 cut(s)	275, 460
Tsp45I	GTSAC	2 cut(s)	275, 460
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	211, 341
VpaK11BI	GGWCC	2 cut(s)	4, 19
XapI	RAATTY	2 cut(s)	215, 382
Zsp2I	ATGCAT	2 cut(s)	253, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.