Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

905123 .. 908001

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGCTACTCTATAATAACACCACCACCCACTCCTCCGCCTCTTCTCCACCCGAACCCGAACCCGAAACCCAAGCCCAATTCCCTCTCTTTAACCCGACGCTCCCTCCTCCTCTCCTCCACCTCACTCATCCTCCCTTCCTCCGCCGCCTCCGCCTCCGTGCCGCCGCCGGACACCACCGTCACCGACCGCGTATTCATGGACTTCAACCTCTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCCCCGACCCGGTTTATCTGGGCCGGGTCGTCCTCGGCCTCTACGGCCACCTCGTCCCCGTCACCGTCGCCAACTTCAAGGCCATGGTCACCTCCGCCGCCTACAAGGGCACAACCGTCCATAAACTCTTCCCCGGTCAATTCTTCCTCGCCGGCCACCAGGGCGATAAACCCGGCGACGTGCGGCGGCCTATTGGCCTCATCGCCCGGAACACCGAGACTGTTGAGTCCAAGGCGTTTGAGTTGACTCACTCCAGACCGGGGCTCCTCTCGCTTAGCTTATCGGAAAATGACGACGATGATGACATCAAGCTTGACCCGGATTACCGGAATGTTGAGTTCTCCATCACTACTGGCCCCGGCCCATGTCCTCAGCTCGATCACAAGAACATTGTTTTCGGCTCAGTACTTGAAGGTATGGATGTTGTGACGGCTATAGCAGCTATACCAACGTACAGACCGTCGGAGAGAATACAGCAGTTCAACGATTTTGCAACGTTTCTCGGAGACGATAGAGCAATGCAGGCACGGGCGCTGTGGAATAAGCCGCTCAAGACTGTGTATATCAGTGACTGTGGGAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

281

Amino Acids

30.61

Weight (kDa)

6.3

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	92 - 240	1.1e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	179, 481
AccBSI	CCGCTC	1 cut(s)	805
AccII	CGCG	1 cut(s)	192
AclI	AACGTT	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	301, 409
AfaI	GTAC	2 cut(s)	663, 710
AfiI	CCNNNNNNNGG	2 cut(s)	265, 516
AgsI	TTSAA	4 cut(s)	208, 334, 668, 739
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	4 cut(s)	534, 568, 631, 698
AluI	AGCT	4 cut(s)	534, 568, 631, 698
Alw26I	GTCTC	2 cut(s)	467, 756
AlwNI	CAGNNNCTG	1 cut(s)	828
AoxI	GGCC	9 cut(s)	277, 292, 301, 336, 409, 443, 451, 610, 616
ApeKI	GCWGC	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	4 cut(s)	234, 277, 611, 617
AsuC2I	CCSGG	8 cut(s)	266, 281, 390, 429, 463, 516, 575, 615
AsuHPI	GGTGA	3 cut(s)	175, 310, 337
AvaII	GGWCC	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	2 cut(s)	316, 702
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	8 cut(s)	266, 281, 390, 429, 463, 516, 575, 615
BcoDI	GTCTC	2 cut(s)	467, 756
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	791
BglI	GCCNNNNNGGC	2 cut(s)	300, 417
BisI	GCNGC	8 cut(s)	147, 164, 167, 354, 440, 443, 696, 803
BlpI	GCTNAGC	1 cut(s)	530
BlsI	GCNGC	8 cut(s)	148, 165, 168, 355, 441, 444, 697, 804
BmcAI	AGTACT	1 cut(s)	663
Bme1390I	CCNGG	9 cut(s)	266, 281, 390, 416, 429, 463, 516, 575, 615
Bme18I	GGWCC	1 cut(s)	234
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	4 cut(s)	234, 277, 611, 617
BmiI	GGNNCC	2 cut(s)	521, 613
BmrFI	CCNGG	9 cut(s)	266, 281, 390, 416, 429, 463, 516, 575, 615
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	8 cut(s)	266, 281, 390, 429, 463, 516, 575, 615
BsaJI	CCNNGG	7 cut(s)	289, 339, 388, 415, 486, 515, 613
BsaWI	WCCGGW	1 cut(s)	582
BsaXI	ACNNNNNCTCC	6 cut(s)	90, 117, 120, 147, 504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 516
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	613
Bse3DI	GCAATG	1 cut(s)	780
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	7 cut(s)	289, 339, 388, 415, 486, 515, 613
BseGI	GGATG	2 cut(s)	129, 682
BseLI	CCNNNNNNNGG	2 cut(s)	265, 516
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	641, 672
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	5 cut(s)	24, 98, 101, 106, 512
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	707
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	9 cut(s)	279, 294, 303, 338, 411, 445, 453, 612, 618
BsiEI	CGRYCG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	265, 516
BsmAI	GTCTC	2 cut(s)	467, 756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	9 cut(s)	279, 294, 303, 338, 411, 445, 453, 612, 618
Bsp1286I	GDGCHC	2 cut(s)	368, 522
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	530
Bsp19I	CCATGG	1 cut(s)	339
BspANI	GGCC	9 cut(s)	279, 294, 303, 338, 411, 445, 453, 612, 618
BspCNI	CTCAG	2 cut(s)	640, 671
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	521, 613
BsrBI	CCGCTC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	7 cut(s)	289, 339, 388, 415, 486, 515, 613
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	2 cut(s)	339, 486
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	7 cut(s)	181, 322, 373, 478, 717, 814, 830
Bst6I	CTCTTC	2 cut(s)	48, 389
BstC8I	GCNNGC	2 cut(s)	409, 780
BstDEI	CTNAG	3 cut(s)	530, 627, 658
BstDSI	CCRYGG	1 cut(s)	339
BstEII	GGTNACC	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	129, 682
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	791
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	2 cut(s)	467, 756
BstMBI	GATC	1 cut(s)	634
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 300, 417, 526, 695, 779
BstNI	CCWGG	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	343
BstSCI	CCNGG	9 cut(s)	264, 279, 388, 414, 427, 461, 514, 573, 613
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	707
BsuRI	GGCC	9 cut(s)	279, 294, 303, 338, 411, 445, 453, 612, 618
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	129, 682
BtsIMutI	CAGTG	1 cut(s)	829
Cac8I	GCNNGC	2 cut(s)	409, 780
CaiI	CAGNNNCTG	1 cut(s)	828
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	4 cut(s)	234, 277, 611, 617
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	662, 709
CviAII	CATG	3 cut(s)	199, 340, 621
CviQI	GTAC	2 cut(s)	662, 709
DdeI	CTNAG	3 cut(s)	530, 627, 658
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
DrdI	GACNNNNNNGTC	2 cut(s)	179, 481
DseDI	GACNNNNNNGTC	2 cut(s)	179, 481
EaeI	YGGCCR	2 cut(s)	301, 409
Eam1104I	CTCTTC	2 cut(s)	48, 389
EarI	CTCTTC	2 cut(s)	48, 389
EciI	GGCGGA	4 cut(s)	27, 133, 142, 340
Eco130I	CCWWGG	2 cut(s)	339, 486
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	339, 486
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	339, 486
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	3 cut(s)	202, 343, 624
FaiI	YATR	9 cut(s)	14, 200, 341, 378, 622, 674, 692, 701, 819
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	198, 339, 620
Fnu4HI	GCNGC	8 cut(s)	147, 164, 167, 354, 440, 443, 696, 803
FokI	GGATG	2 cut(s)	116, 689
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	8 cut(s)	147, 164, 167, 354, 440, 443, 696, 803
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	8 cut(s)	147, 164, 167, 354, 440, 443, 696, 803
GsuI	CTGGAG	1 cut(s)	493
HaeII	RGCGCY	1 cut(s)	791
HaeIII	GGCC	9 cut(s)	279, 294, 303, 338, 411, 445, 453, 612, 618
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	202, 343, 624
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	2 cut(s)	482, 502
HphI	GGTGA	3 cut(s)	175, 310, 337
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	5 cut(s)	241, 541, 721, 761, 842
Hpy188III	TCNNGA	2 cut(s)	510, 808
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	5 cut(s)	102, 326, 437, 554, 721
HpyAV	CCTTC	2 cut(s)	147, 662
HpyCH4III	ACNGT	7 cut(s)	181, 322, 373, 478, 717, 814, 830
HpyCH4IV	ACGT	3 cut(s)	435, 707, 752
HpyCH4V	TGCA	2 cut(s)	749, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 300, 417, 526, 695, 779
HpyF3I	CTNAG	3 cut(s)	530, 627, 658
HpySE526I	ACGT	3 cut(s)	435, 707, 752
Hsp92II	CATG	3 cut(s)	202, 343, 624
HspAI	GCGC	1 cut(s)	788
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	3 cut(s)	107, 525, 834
Lsp1109I	GCAGC	1 cut(s)	707
MaeII	ACGT	3 cut(s)	435, 707, 752
MaeIII	GTNAC	5 cut(s)	181, 316, 343, 682, 824
MalI	GATC	1 cut(s)	636
MbiI	CCGCTC	1 cut(s)	805
MboI	GATC	1 cut(s)	634
MboII	GAAGA	3 cut(s)	35, 376, 391
MhlI	GDGCHC	2 cut(s)	368, 522
MluCI	AATT	2 cut(s)	79, 395
MlyI	GAGTC	2 cut(s)	491, 496
MmeI	TCCRAC	1 cut(s)	699
MroNI	GCCGGC	1 cut(s)	407
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	231
MspR9I	CCNGG	9 cut(s)	266, 281, 390, 416, 429, 463, 516, 575, 615
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	6 cut(s)	152, 300, 417, 526, 695, 779
NaeI	GCCGGC	1 cut(s)	409
NciI	CCSGG	8 cut(s)	266, 281, 390, 429, 463, 516, 575, 615
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	634
NgoMIV	GCCGGC	1 cut(s)	407
NlaIII	CATG	3 cut(s)	202, 343, 624
NlaIV	GGNNCC	2 cut(s)	521, 613
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	5 cut(s)	181, 316, 343, 682, 824
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 713
PdiI	GCCGGC	1 cut(s)	409
PkrI	GCNGC	8 cut(s)	148, 165, 168, 355, 441, 444, 697, 804
PleI	GAGTC	2 cut(s)	490, 496
PpsI	GAGTC	2 cut(s)	490, 496
Psp1406I	AACGTT	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	414
PspEI	GGTNACC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	521, 613
PspPI	GGNCC	4 cut(s)	234, 277, 611, 617
PstNI	CAGNNNCTG	1 cut(s)	828
RsaI	GTAC	2 cut(s)	663, 710
RsaNI	GTAC	2 cut(s)	662, 709
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	8 cut(s)	147, 164, 167, 354, 440, 443, 696, 803
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	4 cut(s)	234, 277, 611, 617
ScaI	AGTACT	1 cut(s)	663
SchI	GAGTC	2 cut(s)	491, 496
ScrFI	CCNGG	9 cut(s)	266, 281, 390, 416, 429, 463, 516, 575, 615
SduI	GDGCHC	2 cut(s)	368, 522
SfcI	CTRYAG	1 cut(s)	690
SfiI	GGCCNNNNNGGCC	1 cut(s)	300
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	2 cut(s)	79, 395
StyD4I	CCNGG	9 cut(s)	264, 279, 388, 414, 427, 461, 514, 573, 613
StyI	CCWWGG	2 cut(s)	339, 486
TaaI	ACNGT	7 cut(s)	181, 322, 373, 478, 717, 814, 830
TaiI	ACGT	3 cut(s)	438, 710, 755
TaqI	TCGA	1 cut(s)	633
TasI	AATT	2 cut(s)	79, 395
TatI	WGTACW	1 cut(s)	661
TauI	GCSGC	7 cut(s)	149, 166, 169, 356, 442, 445, 805
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	5 cut(s)	181, 316, 343, 682, 824
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	5 cut(s)	181, 316, 343, 682, 824
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.