Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002376.1

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Forward (+)

7031 .. 8204

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002376.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgggttactctataatcacaccaccacccactcctccacctcttctccacccgaacccgaacccgaagcccaaacccaatgccctctccctgacccgacgctccctcctcctctcctccacctccctctccctcaccaccctcccctcctccgccgccgccgcctcccctccgccgcccgacaccaccatcaccaaccgcgtcttcatggacttcagcctctgccccacctacttccgctggtcctccgagcaacccgtcctctgccccgacccggtccctctgggccgggtcgtcctgggcctctacggccaccacgtccccatcaccgtcgcgaacttcaaggccatggtcacctccgccgcctacaagggcacaaccgtccataaactcttcccgggtcaattcttcctcgcgggccaccagggcgataaacccggcgacgtccggcggcccattggcctcgtcgccccgaacaccgagaccgtcgattccagggcgtttgagttgactcactcccggccagggcttctctcccttagtctatcggagaacgacgacgacgacgagatcaagctcgacccggattaccgaaacgttgagttctccatcactactggacccggcccatgtcctcagctcgattacaagaacattgtcttcggctcactacttgaaggtttggatgttgtgacggctatagcagctataccgacgtacaggccatcggagagaatacagcagttcaacgattttgcaacgtttatcggagatgatagagcaatgcaggctcgggcgctgtggaataagcctctcaaaactgtgtatatcagtgactgtggtgagctcaaagttgcaaagccttccctttctcctcctagtcttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

296

Amino Acids

32.14

Weight (kDa)

6.59

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
AccII	CGCG	3 cut(s)	201, 335, 416
AclI	AACGTT	2 cut(s)	597, 761
AcoI	YGGCCR	2 cut(s)	310, 521
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	2 cut(s)	274, 525
AgsI	TTSAA	3 cut(s)	343, 677, 748
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	4 cut(s)	297, 423, 494, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	4 cut(s)	577, 640, 707, 847
AluI	AGCT	4 cut(s)	577, 640, 707, 847
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	1 cut(s)	476
AlwNI	CAGNNNCTG	2 cut(s)	222, 837
Ama87I	CYCGRG	2 cut(s)	397, 792
ApeKI	GCWGC	1 cut(s)	704
AspLEI	GCGC	1 cut(s)	799
AspS9I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
AsuC2I	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
AsuHPI	GGTGA	5 cut(s)	127, 184, 319, 346, 854
AvaI	CYCGRG	2 cut(s)	397, 792
AvaII	GGWCC	3 cut(s)	243, 277, 620
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	3 cut(s)	196, 652, 875
Bbv12I	GWGCWC	1 cut(s)	849
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	716
BccI	CCATC	4 cut(s)	197, 332, 617, 733
BceAI	ACGGC	2 cut(s)	325, 711
BciT130I	CCWGG	4 cut(s)	299, 425, 496, 525
BcnI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	800
BglI	GCCNNNNNGGC	2 cut(s)	309, 426
BisI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
BlsI	GCNGC	7 cut(s)	157, 160, 163, 177, 364, 453, 706
Bme18I	GGWCC	3 cut(s)	243, 277, 620
BmeT110I	CYCGRG	2 cut(s)	397, 792
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
BmiI	GGNNCC	2 cut(s)	279, 622
BpiI	GAAGAC	3 cut(s)	196, 652, 875
Bpu10I	CCTNAGC	1 cut(s)	636
BpuMI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	6 cut(s)	298, 348, 397, 424, 495, 524
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 525
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	4 cut(s)	299, 425, 496, 525
BseDI	CCNNGG	6 cut(s)	298, 348, 397, 424, 495, 524
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	2 cut(s)	274, 525
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	6 cut(s)	24, 98, 101, 106, 139, 864
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	716
Bsh1236I	CGCG	3 cut(s)	201, 335, 416
BsiHKAI	GWGCWC	1 cut(s)	849
BsiHKCI	CYCGRG	2 cut(s)	397, 792
BsiSI	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
BslFI	GGGAC	2 cut(s)	263, 305
BslI	CCNNNNNNNGG	2 cut(s)	274, 525
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	263, 305
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	2 cut(s)	397, 792
Bsp1286I	GDGCHC	2 cut(s)	377, 849
Bsp143I	GATC	1 cut(s)	570
Bsp19I	CCATGG	1 cut(s)	348
Bsp68I	TCGCGA	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	3 cut(s)	201, 335, 416
BspLI	GGNNCC	2 cut(s)	279, 622
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	6 cut(s)	298, 348, 397, 424, 495, 524
BssMI	GATC	1 cut(s)	570
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	4 cut(s)	299, 425, 496, 525
Bst4CI	ACNGT	5 cut(s)	331, 382, 487, 823, 839
Bst6I	CTCTTC	2 cut(s)	48, 398
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	418, 789
BstDEI	CTNAG	2 cut(s)	539, 636
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	3 cut(s)	201, 335, 416
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	799
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	570
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
BstNI	CCWGG	4 cut(s)	299, 425, 496, 525
BstPI	GGTNACC	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	3 cut(s)	201, 335, 416
BstV1I	GCAGC	1 cut(s)	716
BstV2I	GAAGAC	3 cut(s)	196, 652, 875
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	838
BtuMI	TCGCGA	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	418, 789
CaiI	CAGNNNCTG	2 cut(s)	222, 837
CfoI	GCGC	1 cut(s)	799
Cfr13I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	2 cut(s)	108, 190
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	3 cut(s)	208, 349, 630
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	2 cut(s)	539, 636
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
EaeI	YGGCCR	2 cut(s)	310, 521
Eam1104I	CTCTTC	2 cut(s)	48, 398
EarI	CTCTTC	2 cut(s)	48, 398
EciI	GGCGGA	3 cut(s)	142, 162, 349
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	3 cut(s)	243, 277, 620
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	397, 792
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	847
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	4 cut(s)	297, 423, 494, 523
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	211, 352, 633
FaiI	YATR	8 cut(s)	14, 209, 350, 387, 631, 701, 710, 828
FaqI	GGGAC	2 cut(s)	263, 305
FatI	CATG	3 cut(s)	207, 348, 629
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
HaeII	RGCGCY	1 cut(s)	800
HapII	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
HgaI	GACGC	2 cut(s)	108, 190
HhaI	GCGC	1 cut(s)	799
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	211, 352, 633
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	2 cut(s)	491, 511
HpaII	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
HphI	GGTGA	5 cut(s)	127, 184, 319, 346, 854
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	4 cut(s)	250, 550, 730, 770
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	671, 873
HpyCH4III	ACNGT	5 cut(s)	331, 382, 487, 823, 839
HpyCH4IV	ACGT	5 cut(s)	318, 444, 597, 716, 761
HpyCH4V	TGCA	3 cut(s)	758, 787, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
HpyF3I	CTNAG	2 cut(s)	539, 636
HpySE526I	ACGT	5 cut(s)	318, 444, 597, 716, 761
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	211, 352, 633
HspAI	GCGC	1 cut(s)	797
Kzo9I	GATC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	716
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	5 cut(s)	318, 444, 597, 716, 761
MaeIII	GTNAC	4 cut(s)	5, 352, 691, 833
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	6 cut(s)	35, 196, 385, 400, 652, 875
MhlI	GDGCHC	2 cut(s)	377, 849
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	505
MseI	TTAA	1 cut(s)	889
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	8 cut(s)	275, 289, 398, 438, 448, 520, 584, 624
MvaI	CCWGG	4 cut(s)	299, 425, 496, 525
MvnI	CGCG	3 cut(s)	201, 335, 416
MwoI	GCNNNNNNNGC	5 cut(s)	161, 309, 426, 704, 788
NciI	CCSGG	8 cut(s)	275, 290, 398, 399, 438, 520, 584, 624
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	3 cut(s)	211, 352, 633
NlaIV	GGNNCC	2 cut(s)	279, 622
NmuCI	GTSAC	3 cut(s)	352, 691, 833
NruI	TCGCGA	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 561, 564
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	7 cut(s)	157, 160, 163, 177, 364, 453, 706
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	849
Psp1406I	AACGTT	2 cut(s)	597, 761
Psp6I	CCWGG	4 cut(s)	297, 423, 494, 523
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	4 cut(s)	297, 423, 494, 523
PspN4I	GGNNCC	2 cut(s)	279, 622
PspPI	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
PstNI	CAGNNNCTG	2 cut(s)	222, 837
PsyI	GACNNNGTC	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	335
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	889
SatI	GCNGC	7 cut(s)	156, 159, 162, 176, 363, 452, 705
Sau3AI	GATC	1 cut(s)	570
Sau96I	GGNCC	8 cut(s)	243, 277, 286, 301, 418, 453, 620, 626
SchI	GAGTC	1 cut(s)	505
SduI	GDGCHC	2 cut(s)	377, 849
SfcI	CTRYAG	1 cut(s)	699
SfiI	GGCCNNNNNGGCC	1 cut(s)	309
SinI	GGWCC	3 cut(s)	243, 277, 620
SmaI	CCCGGG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	5 cut(s)	331, 382, 487, 823, 839
TaiI	ACGT	5 cut(s)	321, 447, 600, 719, 764
TaqI	TCGA	3 cut(s)	489, 579, 642
TasI	AATT	1 cut(s)	404
TauI	GCSGC	6 cut(s)	158, 161, 164, 178, 365, 454
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	889
Tru9I	TTAA	1 cut(s)	889
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	3 cut(s)	352, 691, 833
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	3 cut(s)	352, 691, 833
TspDTI	ATGAA	1 cut(s)	196
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	1 cut(s)	838
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	3 cut(s)	243, 277, 620
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	879
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.