Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008587

Physical Location & Seq

Genomic Coordinates Reverse (-)

90964185 .. 90968804

Gene Structure 4620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTTACTCTATAATCACACCACCACCCACTCCTCCACCTCTTCTCCACCCGAACCCGAACCCGAAGCCCAAACCCAATGCCCTCTCCCTGACCCGACGCTCCCTCCTCCTCTCCTCCACCTCCCTCTCCCTCACCACCCTCCCCTCCTCCGCCGCCTCCCCTCCGCCGCCCGACACCACCATCACCCACCGCGTCTTCATGGACTTCAGCCTCTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCCCCGAGCCGGTCCCTCTGGGCCGGGTCGTCCTGGGCCTCTACGGCCACCACGTCCCCATCACGGTCGCGAACTTCAAGGCCATGGTCACCTCCGCCGCCTACAAGGGCACAACCGTCCATAAACTCTTCCCGGGTCAATTCTTCCTCGCGGGTCACCAGGGTGATAAACCCGGCGACGTCCGGCGGCCCATTGGCCTCGTCGCCCCGAACACCGAGACCGTCGATTCCAGGGCGTTTCAGTTGACTCACTCCCGGCCAGGGCTTCTCTCCCTTAGTCTATCGGAGAACGACGACGACGACGAGATCAAGCTCGACCCGGATTACCGAAACGTTGAGTTCTCCATCACTACTGGACCCGGCCCATGTCCTCAGCTCGATTACAAGAACATTGTCTTCGGCTCAGTACTCGAAGGTTTGGATGTTGTGACAGCTATAGCAGCTATACCGACGTACAGGCCATCGGAGAGAATACAGCAGTTCAACGATTTTGCAACGTTTATCGGAGATGATAGAGCAATGCAGGCTCGGGCGCTGTGGAATAAACCTCTCAAAACTGTGTATATCAGTGACTGTGGTGAGCTCAAAGTTGCAAAGCCTTCCCTTTCTCCTCCTAGTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

294

Amino Acids

32.02

Weight (kDa)

7.05

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	93 - 241	4.5e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35100 AT5G35100 AT5G35100
fragaria_vesca	FvH4_1g01710 FvH4_1g01710 FvH4_1g01710
malus_domestica	MD15G1159700.v1.1
prunus_persica	Prupe.7G254600_v2.0.a1 Prupe.7G254600_v2.0.a1
pyrus_communis	pycom15g14340
rosa_chinensis	RchiOBHm_Chr2g0086651
rosa_laevigata	RLG00000013558 RLG00000015770
rosa_multiflora	Rmu_co8357025.1_g000001 Rmu_sc0002376.1_g000002 Rmu_ssc0000449.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154350
rosa_rugosa	Rorug01G0468100
rosa_samantha	Rh2AG020000 Rh2BG020000 Rh2CG019600 Rh2DG020500
rosa_wichuraiana	Rw2G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	441
AccII	CGCG	3 cut(s)	195, 329, 410
AclI	AACGTT	2 cut(s)	591, 755
AcoI	YGGCCR	2 cut(s)	304, 515
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	2 cut(s)	666, 713
AfiI	CCNNNNNNNGG	3 cut(s)	268, 322, 519
AgsI	TTSAA	2 cut(s)	337, 742
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	4 cut(s)	291, 417, 488, 517
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	5 cut(s)	571, 634, 692, 701, 841
AluI	AGCT	5 cut(s)	571, 634, 692, 701, 841
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	1 cut(s)	470
AlwNI	CAGNNNCTG	2 cut(s)	216, 831
Ama87I	CYCGRG	3 cut(s)	263, 391, 786
AoxI	GGCC	9 cut(s)	280, 295, 304, 339, 446, 454, 515, 619, 716
ApeKI	GCWGC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	7 cut(s)	237, 271, 280, 295, 447, 614, 620
AsuC2I	CCSGG	7 cut(s)	284, 392, 393, 432, 514, 578, 618
AsuHPI	GGTGA	6 cut(s)	127, 178, 340, 407, 434, 848
AvaI	CYCGRG	3 cut(s)	263, 391, 786
AvaII	GGWCC	3 cut(s)	237, 271, 614
BaeGI	GKGCMC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	843
BbsI	GAAGAC	3 cut(s)	190, 646, 869
Bbv12I	GWGCWC	1 cut(s)	843
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	710
BccI	CCATC	4 cut(s)	191, 326, 611, 727
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	4 cut(s)	293, 419, 490, 519
BcnI	CCSGG	7 cut(s)	284, 392, 393, 432, 514, 578, 618
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	873
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	794
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	5 cut(s)	156, 170, 357, 446, 699
BlsI	GCNGC	5 cut(s)	157, 171, 358, 447, 700
BmcAI	AGTACT	1 cut(s)	666
Bme18I	GGWCC	3 cut(s)	237, 271, 614
BmeT110I	CYCGRG	3 cut(s)	263, 391, 786
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	7 cut(s)	237, 271, 280, 295, 447, 614, 620
BmiI	GGNNCC	2 cut(s)	273, 616
BpiI	GAAGAC	3 cut(s)	190, 646, 869
Bpu10I	CCTNAGC	1 cut(s)	630
BpuMI	CCSGG	7 cut(s)	284, 392, 393, 432, 514, 578, 618
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	6 cut(s)	292, 342, 391, 418, 489, 518
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 90, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 322, 519
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	293, 419, 490, 519
BseDI	CCNNGG	6 cut(s)	292, 342, 391, 418, 489, 518
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	3 cut(s)	268, 322, 519
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	2 cut(s)	644, 675
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	6 cut(s)	24, 98, 101, 106, 139, 858
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	710
Bsh1236I	CGCG	3 cut(s)	195, 329, 410
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	9 cut(s)	282, 297, 306, 341, 448, 456, 517, 621, 718
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	843
BsiHKCI	CYCGRG	3 cut(s)	263, 391, 786
BsiSI	CCGG	8 cut(s)	269, 283, 392, 432, 442, 514, 578, 618
BslFI	GGGAC	2 cut(s)	257, 299
BslI	CCNNNNNNNGG	3 cut(s)	268, 322, 519
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	2 cut(s)	257, 299
BsnI	GGCC	9 cut(s)	282, 297, 306, 341, 448, 456, 517, 621, 718
Bso31I	GGTCTC	1 cut(s)	470
BsoBI	CYCGRG	3 cut(s)	263, 391, 786
Bsp1286I	GDGCHC	2 cut(s)	371, 843
Bsp143I	GATC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	342
Bsp68I	TCGCGA	1 cut(s)	329
BspANI	GGCC	9 cut(s)	282, 297, 306, 341, 448, 456, 517, 621, 718
BspCNI	CTCAG	2 cut(s)	643, 674
BspFNI	CGCG	3 cut(s)	195, 329, 410
BspLI	GGNNCC	2 cut(s)	273, 616
BspTNI	GGTCTC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	6 cut(s)	292, 342, 391, 418, 489, 518
BssMI	GATC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	4 cut(s)	293, 419, 490, 519
Bst4CI	ACNGT	5 cut(s)	325, 376, 481, 817, 833
Bst6I	CTCTTC	2 cut(s)	48, 392
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	3 cut(s)	533, 630, 661
BstDSI	CCRYGG	1 cut(s)	342
BstEII	GGTNACC	2 cut(s)	346, 413
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	3 cut(s)	195, 329, 410
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	564
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 698, 782
BstNI	CCWGG	4 cut(s)	293, 419, 490, 519
BstPI	GGTNACC	2 cut(s)	346, 413
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	3 cut(s)	195, 329, 410
BstV1I	GCAGC	1 cut(s)	710
BstV2I	GAAGAC	3 cut(s)	190, 646, 869
BsuRI	GGCC	9 cut(s)	282, 297, 306, 341, 448, 456, 517, 621, 718
BtgI	CCRYGG	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	832
BtuMI	TCGCGA	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	783
CaiI	CAGNNNCTG	2 cut(s)	216, 831
CfoI	GCGC	1 cut(s)	793
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	7 cut(s)	237, 271, 280, 295, 447, 614, 620
Cfr9I	CCCGGG	1 cut(s)	391
CseI	GACGC	2 cut(s)	108, 184
Csp6I	GTAC	2 cut(s)	665, 712
CviAII	CATG	3 cut(s)	202, 343, 624
CviQI	GTAC	2 cut(s)	665, 712
DdeI	CTNAG	3 cut(s)	533, 630, 661
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
EaeI	YGGCCR	2 cut(s)	304, 515
Eam1104I	CTCTTC	2 cut(s)	48, 392
EarI	CTCTTC	2 cut(s)	48, 392
EciI	GGCGGA	3 cut(s)	142, 156, 343
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	843
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	3 cut(s)	237, 271, 614
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	193
Eco88I	CYCGRG	3 cut(s)	263, 391, 786
Eco91I	GGTNACC	2 cut(s)	346, 413
EcoICRI	GAGCTC	1 cut(s)	841
EcoO65I	GGTNACC	2 cut(s)	346, 413
EcoRII	CCWGG	4 cut(s)	291, 417, 488, 517
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	205, 346, 627
FaiI	YATR	8 cut(s)	14, 203, 344, 381, 625, 695, 704, 822
FaqI	GGGAC	2 cut(s)	257, 299
FatI	CATG	3 cut(s)	201, 342, 623
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	5 cut(s)	156, 170, 357, 446, 699
FokI	GGATG	1 cut(s)	692
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	5 cut(s)	156, 170, 357, 446, 699
FspBI	CTAG	1 cut(s)	873
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	5 cut(s)	156, 170, 357, 446, 699
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	9 cut(s)	282, 297, 306, 341, 448, 456, 517, 621, 718
HapII	CCGG	8 cut(s)	269, 283, 392, 432, 442, 514, 578, 618
HgaI	GACGC	2 cut(s)	108, 184
HhaI	GCGC	1 cut(s)	793
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	205, 346, 627
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	2 cut(s)	485, 505
HpaII	CCGG	8 cut(s)	269, 283, 392, 432, 442, 514, 578, 618
HphI	GGTGA	6 cut(s)	127, 178, 340, 407, 434, 848
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	4 cut(s)	244, 544, 724, 764
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	504
Hpy99I	CGWCG	9 cut(s)	102, 440, 464, 485, 554, 557, 560, 563, 712
HpyAV	CCTTC	2 cut(s)	665, 867
HpyCH4III	ACNGT	5 cut(s)	325, 376, 481, 817, 833
HpyCH4IV	ACGT	5 cut(s)	312, 438, 591, 710, 755
HpyCH4V	TGCA	3 cut(s)	752, 781, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 698, 782
HpyF3I	CTNAG	3 cut(s)	533, 630, 661
HpySE526I	ACGT	5 cut(s)	312, 438, 591, 710, 755
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	205, 346, 627
HspAI	GCGC	1 cut(s)	791
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	5 cut(s)	312, 438, 591, 710, 755
MaeIII	GTNAC	5 cut(s)	5, 346, 413, 685, 827
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	6 cut(s)	35, 190, 379, 394, 646, 869
MhlI	GDGCHC	2 cut(s)	371, 843
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	499
MseI	TTAA	1 cut(s)	883
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	8 cut(s)	269, 283, 392, 432, 442, 514, 578, 618
MvaI	CCWGG	4 cut(s)	293, 419, 490, 519
MvnI	CGCG	3 cut(s)	195, 329, 410
MwoI	GCNNNNNNNGC	3 cut(s)	303, 698, 782
NciI	CCSGG	7 cut(s)	284, 392, 393, 432, 514, 578, 618
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	3 cut(s)	205, 346, 627
NlaIV	GGNNCC	2 cut(s)	273, 616
NmuCI	GTSAC	4 cut(s)	346, 413, 685, 827
NruI	TCGCGA	1 cut(s)	329
OliI	CACNNNNGTG	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 555, 558
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	5 cut(s)	157, 171, 358, 447, 700
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	843
Psp1406I	AACGTT	2 cut(s)	591, 755
Psp6I	CCWGG	4 cut(s)	291, 417, 488, 517
PspEI	GGTNACC	2 cut(s)	346, 413
PspGI	CCWGG	4 cut(s)	291, 417, 488, 517
PspN4I	GGNNCC	2 cut(s)	273, 616
PspPI	GGNCC	7 cut(s)	237, 271, 280, 295, 447, 614, 620
PstNI	CAGNNNCTG	2 cut(s)	216, 831
RruI	TCGCGA	1 cut(s)	329
RsaI	GTAC	2 cut(s)	666, 713
RsaNI	GTAC	2 cut(s)	665, 712
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	883
SatI	GCNGC	5 cut(s)	156, 170, 357, 446, 699
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	7 cut(s)	237, 271, 280, 295, 447, 614, 620
ScaI	AGTACT	1 cut(s)	666
SchI	GAGTC	1 cut(s)	499
SduI	GDGCHC	2 cut(s)	371, 843
SfcI	CTRYAG	1 cut(s)	693
SfiI	GGCCNNNNNGGCC	1 cut(s)	303
SinI	GGWCC	3 cut(s)	237, 271, 614
SmaI	CCCGGG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	873
SstI	GAGCTC	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	5 cut(s)	325, 376, 481, 817, 833
TaiI	ACGT	5 cut(s)	315, 441, 594, 713, 758
TaqI	TCGA	4 cut(s)	483, 573, 636, 669
TasI	AATT	1 cut(s)	398
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	4 cut(s)	158, 172, 359, 448
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	883
Tru9I	TTAA	1 cut(s)	883
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	4 cut(s)	346, 413, 685, 827
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	4 cut(s)	346, 413, 685, 827
TspDTI	ATGAA	1 cut(s)	190
TspMI	CCCGGG	1 cut(s)	391
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	3 cut(s)	237, 271, 614
XmaI	CCCGGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	873
ZraI	GACGTC	1 cut(s)	439
ZrmI	AGTACT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.