Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Reverse (-)

14805213 .. 14808275

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTCTTGTTCTTCTTCTTCTATTAGTCTCCTCCAACCTCTTCATAGTCTCTCTTCTTCCACTCTTTTCTTTTCTCAGCCAAGTTTTCATTTTTCGTCCTCTCTAAAACCTAATAAGTCCAAAAGGCACAATCTTTCGAAATCCTTGACTCTCCGATTTGCTCTTACGGAATCAGATTCTACTAAACCTCTAGAAATAGAAGAACCAAGTTCCAAATCCCTTCTTCTACAACTCTCTAAGTGTTTTGATCTTCCATCAGATTACTTCCAGCAGCTACCAAATGATCTTCGTCTCGATTTGAATGATGCGGCTTTTGATCTCTCCAATGGACCTGTCATCGATGAGTGTGGTCAAGAGCTTGGGGAGACCTTACTGAATCTGTCTCGTGCTTGGGAACAAGCTGACACATCAACTTCTCGTAGTTTAGTGGAGAAACTTCCCGAACTGGAAATTTTATTAACAGATGGTGCCAGATCAGCCTTTGGGAAGCGTTTGATATCTGCAGGAAAAAGGTTCCAGGGCATGGGACAATATGCCAAAGGTGAATTACAGAAGATTGCGAAAGCGATGATCACAACTGGAGGGGTCTTATCTGCAAAAACATCATCTGTTTCAGTCAGCAATGAATCTAAGTCAGGAACAAGGATGTTTAAGTTTGGGGAGCTTCAAGTTGCTGTGACTCCAGAGAAAGCCTACACCGGAGCTGCCATTGCGTTCATCTACGGGATACTTTCATGGCAAATCAGTCAAGGGATCCAAAGCATACCAGAGAACTCATTGCAGTATGCAAATGACAATGCATTGCTAATCGGAAAGTCTCTAAGAGGGTCTCTTCTAGCTCTGTTTTATGCGTCAACCGTCTTGTCAGGCTTCACAACAGCTGGGCTTATCCTACTCGCTAAGCAGCTTTCATCAGAAAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3082

Protein Analysis

309

Amino Acids

33.44

Weight (kDa)

7.67

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	526
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	751, 764
AcsI	RAATTY	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	304, 671
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	8 cut(s)	277, 361, 404, 667, 707, 842, 884, 910
AluI	AGCT	8 cut(s)	277, 361, 404, 667, 707, 842, 884, 910
Alw26I	GTCTC	7 cut(s)	35, 56, 299, 362, 390, 825, 837
AlwI	GGATC	2 cut(s)	751, 764
ApeKI	GCWGC	3 cut(s)	274, 707, 907
ApoI	RAATTY	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	756
BanI	GGYRCC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	286, 694, 919
BccI	CCATC	2 cut(s)	265, 461
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	723
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	7 cut(s)	35, 56, 299, 362, 390, 825, 837
BfaI	CTAG	2 cut(s)	194, 839
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	4 cut(s)	275, 312, 708, 908
BlpI	GCTNAGC	1 cut(s)	903
BlsI	GCNGC	4 cut(s)	276, 313, 709, 909
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	3 cut(s)	472, 518, 758
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	2 cut(s)	603, 669
Bpu1102I	GCTNAGC	1 cut(s)	903
Bpu14I	TTCGAA	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	342
BsaI	GGTCTC	2 cut(s)	362, 837
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	2 cut(s)	453, 586
Bse3DI	GCAATG	4 cut(s)	631, 711, 779, 803
BseBI	CCWGG	1 cut(s)	521
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	4 cut(s)	631, 711, 779, 803
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	453, 586
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	286, 694, 919
BseYI	CCCAGC	1 cut(s)	884
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	7 cut(s)	35, 56, 299, 362, 390, 825, 837
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	543
Bso31I	GGTCTC	2 cut(s)	362, 837
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
Bsp1720I	GCTNAGC	1 cut(s)	903
BspACI	CCGC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	472, 518, 758
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	751, 764
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	2 cut(s)	362, 837
BsrDI	GCAATG	4 cut(s)	631, 711, 779, 803
BsrI	ACTGG	2 cut(s)	453, 586
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
BssSI	CACGAG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	862
Bst6I	CTCTTC	3 cut(s)	48, 61, 840
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	5 cut(s)	78, 240, 633, 824, 903
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	253, 289, 322, 479, 576, 759
BstMAI	GTCTC	7 cut(s)	35, 56, 299, 362, 390, 825, 837
BstMBI	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 713
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	286, 694, 919
BstX2I	RGATCY	1 cut(s)	756
BstYI	RGATCY	1 cut(s)	756
Bsu15I	ATCGAT	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	332
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	843
CviAII	CATG	2 cut(s)	526, 738
DdeI	CTNAG	5 cut(s)	78, 240, 633, 824, 903
DpnI	GATC	6 cut(s)	252, 288, 321, 478, 575, 758
DpnII	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
Eam1104I	CTCTTC	3 cut(s)	48, 61, 840
EarI	CTCTTC	3 cut(s)	48, 61, 840
Eco31I	GGTCTC	2 cut(s)	362, 837
Eco32I	GATATC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	805
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	2 cut(s)	529, 741
FaiI	YATR	7 cut(s)	48, 527, 537, 739, 767, 789, 852
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	2 cut(s)	525, 737
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	275, 312, 708, 908
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	4 cut(s)	275, 312, 708, 908
FspBI	CTAG	2 cut(s)	194, 839
GluI	GCNGC	4 cut(s)	275, 312, 708, 908
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	2 cut(s)	603, 669
HapII	CCGG	1 cut(s)	702
HgaI	GACGC	1 cut(s)	843
Hin1II	CATG	2 cut(s)	529, 741
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	6 cut(s)	151, 173, 179, 379, 629, 682
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	858
Hpy188I	TCNGA	5 cut(s)	158, 178, 262, 815, 919
Hpy188III	TCNNGA	6 cut(s)	194, 296, 356, 443, 639, 686
Hpy8I	GTNNAC	1 cut(s)	858
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4V	TGCA	5 cut(s)	506, 599, 784, 791, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 713
HpyF3I	CTNAG	5 cut(s)	78, 240, 633, 824, 903
Hsp92II	CATG	2 cut(s)	529, 741
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
LmnI	GCTCC	2 cut(s)	664, 704
Lsp1109I	GCAGC	3 cut(s)	286, 694, 919
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	194, 839
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	6 cut(s)	252, 288, 321, 478, 575, 758
MboI	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
MflI	RGATCY	1 cut(s)	756
MluCI	AATT	2 cut(s)	453, 548
MlyI	GAGTC	2 cut(s)	145, 676
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	44, 51, 112, 201, 578, 821
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	2 cut(s)	461, 654
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	479, 713
NdeII	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
NlaIII	CATG	2 cut(s)	529, 741
NlaIV	GGNNCC	3 cut(s)	472, 518, 758
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	805
NspV	TTCGAA	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	173, 179, 379, 629
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	4 cut(s)	276, 313, 709, 909
PleI	GAGTC	2 cut(s)	145, 676
PpsI	GAGTC	2 cut(s)	145, 676
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	472, 518, 758
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	756
PvuII	CAGCTG	1 cut(s)	884
SaqAI	TTAA	2 cut(s)	461, 654
SatI	GCNGC	4 cut(s)	275, 312, 708, 908
Sau3AI	GATC	6 cut(s)	250, 286, 319, 476, 573, 756
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	145, 676
ScrFI	CCNGG	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	2 cut(s)	453, 548
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	2 cut(s)	194, 839
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	862
TaqI	TCGA	3 cut(s)	140, 297, 342
TasI	AATT	2 cut(s)	453, 548
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	4 cut(s)	173, 179, 379, 629
Tru1I	TTAA	2 cut(s)	461, 654
Tru9I	TTAA	2 cut(s)	461, 654
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	3 cut(s)	274, 707, 907
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	6 cut(s)	35, 80, 642, 709, 726, 903
TspGWI	ACGGA	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	453
XbaI	TCTAGA	1 cut(s)	193
XspI	CTAG	2 cut(s)	194, 839
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.