Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Forward (+)

33133226 .. 33136143

Gene Structure 2918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1202400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAACCGAAACACTGTTAATAAGCACAGTGGATTTCCGATTTTACCCCCAATTATTTTATGGTATTCCGAGTTTGGCCTTTTGTCTTGTTGTCAAATTGGGATGAATTATGTGATACGTGGGACTCCCAGCTTCCTCCACCTTTTCCGTCGCTCACCGCTTTTTCCACCTTTCAAGTTTCAACCACCGCTACCCTCCCACGCCTCAGCTCTCTTTCCTATTCATACATCAACCCAACTTTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTAAAAGTTTCCAATTTCCCCAAAACCCTCCCCTCCAAATCCCCCACTACCTTATTCTCCCTCGCAAAATCAGATTCCCCCAAATCCTTCCAACCCAACAGTCCAATTTTTCAATCTTTACTCCAAGAACTAGCCGTGAGCATCCATTTCCCATTTCGAATTTCGATCCTTTAGGTCAAGTTTTGAACCTTTACTTATTGTCATTGCTTAATGTAGTTGACAGCTTTGATCTTTCGGATGACTACTTGGCGCAGCTTCCGAATGATTTCCGTCTCGATGTGATTAACAAAAAATCTCTTTCAAGTGCACAGGATTTGTGCAGACTGATGGACTTGGTGTTGCTTAGGGAGCAACATGCTAGGACTTTACTTATTTGTAGGGGGCTTAATGTTACCATTGATGAAGTCTGTGAAGCACTTTTGGAAGGTGTGTGCTTTACCCGAAGAAGTCTCAGAATATTGCAATTCTTGCTTATTGCATTTTATCCAATTTGGAAGGATTTTAAACTCAACCGTGAAATTGAGTATAGGCCTTTTTGGTTGTACATAGGTTCTTATTGTGGAGTAGATACAAATATGCCATGTACATATTCTACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

296

Amino Acids

34.72

Weight (kDa)

8.92

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	158, 188
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	2 cut(s)	830, 871
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	5 cut(s)	175, 182, 399, 472, 588
AluBI	AGCT	4 cut(s)	132, 209, 510, 541
AluI	AGCT	4 cut(s)	132, 209, 510, 541
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	2 cut(s)	563, 740
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	2 cut(s)	76, 815
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	147
AsuII	TTCGAA	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	1 cut(s)	607
BceAI	ACGGC	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	563, 740
BfaI	CTAG	2 cut(s)	417, 645
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
BmsI	GCATC	1 cut(s)	436
Bpu10I	CCTNAGC	2 cut(s)	205, 629
Bpu14I	TTCGAA	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	488
BseGI	GGATG	3 cut(s)	108, 427, 529
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	219, 751
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	78, 817
BsiHKAI	GWGCWC	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	563, 740
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	78, 817
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp1407I	TGTACA	2 cut(s)	828, 869
Bsp143I	GATC	2 cut(s)	451, 514
BspACI	CCGC	2 cut(s)	158, 188
BspANI	GGCC	2 cut(s)	78, 817
BspCNI	CTCAG	2 cut(s)	218, 750
BspPI	GGATC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	488
BsrGI	TGTACA	2 cut(s)	828, 869
BssMI	GATC	2 cut(s)	451, 514
Bst4CI	ACNGT	4 cut(s)	16, 29, 387, 800
BstAPI	GCANNNNNTGC	1 cut(s)	754
BstAUI	TGTACA	2 cut(s)	828, 869
BstBAI	YACGTR	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	205, 629, 737
BstF5I	GGATG	3 cut(s)	108, 427, 529
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	2 cut(s)	454, 517
BstMAI	GTCTC	2 cut(s)	563, 740
BstMBI	GATC	2 cut(s)	451, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	634, 754
BstNSI	RCATGY	1 cut(s)	644
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	78, 817
BtsCI	GGATG	3 cut(s)	108, 427, 529
BtsIMutI	CAGTG	2 cut(s)	12, 34
CfoI	GCGC	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	829, 870
CviAII	CATG	2 cut(s)	641, 867
CviJI	RGCY	8 cut(s)	78, 132, 209, 420, 510, 541, 670, 817
CviKI_1	RGCY	8 cut(s)	78, 132, 209, 420, 510, 541, 670, 817
CviQI	GTAC	2 cut(s)	829, 870
DdeI	CTNAG	3 cut(s)	205, 629, 737
DpnI	GATC	2 cut(s)	453, 516
DpnII	GATC	2 cut(s)	451, 514
DraI	TTTAAA	1 cut(s)	790
Eco147I	AGGCCT	1 cut(s)	817
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	2 cut(s)	644, 870
FaiI	YATR	9 cut(s)	61, 111, 225, 642, 813, 833, 863, 868, 874
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	640, 866
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	3 cut(s)	115, 414, 536
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	2 cut(s)	417, 645
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	539
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	78, 817
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	2 cut(s)	644, 870
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	2 cut(s)	124, 360
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	505, 593
Hpy188I	TCNGA	6 cut(s)	39, 70, 359, 523, 546, 740
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	2 cut(s)	505, 593
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	3 cut(s)	383, 704, 775
HpyCH4III	ACNGT	4 cut(s)	16, 29, 387, 800
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	593, 606, 748, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	634, 754
HpyF3I	CTNAG	3 cut(s)	205, 629, 737
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	644, 870
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	451, 514
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	2 cut(s)	142, 581
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	417, 645
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	453, 516
MboI	GATC	2 cut(s)	451, 514
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	9 cut(s)	51, 96, 106, 299, 391, 445, 749, 774, 804
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	146, 205, 214, 324, 329, 357
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	6 cut(s)	18, 495, 570, 672, 789, 886
MwoI	GCNNNNNNNGC	2 cut(s)	634, 754
NdeII	GATC	2 cut(s)	451, 514
NlaIII	CATG	2 cut(s)	644, 870
NspI	RCATGY	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	830, 871
RsaNI	GTAC	2 cut(s)	829, 870
SaqAI	TTAA	6 cut(s)	18, 495, 570, 672, 789, 886
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	2 cut(s)	451, 514
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	443
Sse9I	AATT	9 cut(s)	51, 96, 106, 299, 391, 445, 749, 774, 804
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	2 cut(s)	158, 188
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	2 cut(s)	417, 645
StuI	AGGCCT	1 cut(s)	817
TaaI	ACNGT	4 cut(s)	16, 29, 387, 800
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	443, 450, 561
TasI	AATT	9 cut(s)	51, 96, 106, 299, 391, 445, 749, 774, 804
TatI	WGTACW	2 cut(s)	828, 869
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	6 cut(s)	18, 495, 570, 672, 789, 886
Tru9I	TTAA	6 cut(s)	18, 495, 570, 672, 789, 886
TscAI	CASTG	2 cut(s)	19, 34
TseI	GCWGC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	17, 119, 212, 702
TspGWI	ACGGA	2 cut(s)	137, 545
TspRI	CASTG	2 cut(s)	19, 34
VneI	GTGCAC	1 cut(s)	591
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	2 cut(s)	417, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.