Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Forward (+)

73574186 .. 73588844

Gene Structure 14659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0617900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTCACCAGAGCCCGACTCCTCCGGTGCCACGTAAACACCACTCACCGGATTCGAGTTCATCGGACGGTGGAGCCGCCGCAATCACCAGAGCGAAGAAGAGCCGCTACCCAGTAGACGACGACGACGACGACGGCGGTGATTGGGTCGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGCGCCGGCATGATCGCCGATTGCGTGGCGCTGTGCTGCTGCCCCTGCGCTCTGGTCAACCTGTTGACTCTGGCCTTCGTGAAAGTGCCGTGGATGGTTGGGAGGAAGTGCTTGGGGTTAGGCAAGAACAAGAAGAAGAAGAAGGAAAACCAGAGCCAGGGGCAGAATCGGAAATCCAAAAAAAAGTGCAGGAGCAAGAAGAAGCAGGTTAGTAGTAGTCATCGGCATCAACGTTGCGCGGCGGAGGAGGAATTGCCGGCGCAGATATCGTGCTACGTGTACGGTGTTGATGATCAGGAGGAGGAGGAGGAAGGGGAAGAAGAGGAGGATTGTGTGAGTAGTGCAGAGAGGGTATGGTTGGAATTGTACCAGGTGGGACATTTGGGTTTTGGGAGGGTTTCGTTTAGTGGTGGTGGAGTTCAGTCTGTGCAGGGGAAGGTTGCCATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

210

Amino Acids

22.94

Weight (kDa)

7.91

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	419
AciI	CCGC	6 cut(s)	78, 81, 106, 138, 419, 422
AclI	AACGTT	1 cut(s)	412
AfaI	GTAC	3 cut(s)	167, 461, 548
AfiI	CCNNNNNNNGG	2 cut(s)	49, 337
AflIII	ACRYGT	1 cut(s)	456
AjnI	CCWGG	2 cut(s)	336, 549
Alw21I	GWGCWC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	180, 216, 219
AspLEI	GCGC	5 cut(s)	185, 211, 230, 419, 442
AsuHPI	GGTGA	3 cut(s)	39, 79, 152
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	3 cut(s)	192, 203, 206
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	2 cut(s)	151, 253
BciT130I	CCWGG	2 cut(s)	338, 551
BclI	TGATCA	1 cut(s)	472
BfoI	RGCGCY	2 cut(s)	186, 212
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	7 cut(s)	78, 81, 106, 181, 217, 220, 420
BlsI	GCNGC	7 cut(s)	79, 82, 107, 182, 218, 221, 421
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	338, 551
BmiI	GGNNCC	2 cut(s)	30, 76
BmrFI	CCNGG	2 cut(s)	338, 551
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	107
BplI	GAGNNNNNCTC	1 cut(s)	36
BsaAI	YACGTR	2 cut(s)	35, 457
BsaJI	CCNNGG	2 cut(s)	269, 337
BsaWI	WCCGGW	2 cut(s)	25, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 337
Bse118I	RCCGGY	3 cut(s)	171, 185, 436
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	338, 551
BseDI	CCNNGG	2 cut(s)	269, 337
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	49, 337
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	6 cut(s)	12, 440, 494, 497, 500, 518
BseXI	GCAGC	3 cut(s)	192, 203, 206
BsgI	GTGCAG	3 cut(s)	388, 543, 629
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	6 cut(s)	26, 50, 159, 172, 186, 437
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	49, 337
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	17, 158
Bsp143I	GATC	2 cut(s)	192, 472
BspACI	CCGC	6 cut(s)	78, 81, 106, 138, 419, 422
BspANI	GGCC	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	30, 76
BspMI	ACCTGC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	28
BsrFI	RCCGGY	3 cut(s)	171, 185, 436
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	3 cut(s)	171, 185, 436
BssECI	CCNNGG	2 cut(s)	269, 337
BssMI	GATC	2 cut(s)	192, 472
Bst2UI	CCWGG	2 cut(s)	338, 551
Bst4CI	ACNGT	2 cut(s)	71, 464
Bst6I	CTCTTC	2 cut(s)	95, 495
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	2 cut(s)	35, 457
BstC8I	GCNNGC	2 cut(s)	187, 438
BstDSI	CCRYGG	1 cut(s)	269
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	419
BstH2I	RGCGCY	2 cut(s)	186, 212
BstHHI	GCGC	5 cut(s)	185, 211, 230, 419, 442
BstKTI	GATC	2 cut(s)	195, 475
BstMBI	GATC	2 cut(s)	192, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 177, 186, 225
BstNI	CCWGG	2 cut(s)	338, 551
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	336, 549
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	192, 203, 206
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	187, 438
CfoI	GCGC	5 cut(s)	185, 211, 230, 419, 442
Cfr10I	RCCGGY	3 cut(s)	171, 185, 436
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	3 cut(s)	166, 460, 547
CviAII	CATG	3 cut(s)	177, 190, 625
CviJI	RGCY	5 cut(s)	15, 77, 105, 254, 336
CviKI_1	RGCY	5 cut(s)	15, 77, 105, 254, 336
CviQI	GTAC	3 cut(s)	166, 460, 547
DpnI	GATC	2 cut(s)	194, 474
DpnII	GATC	2 cut(s)	192, 472
Eam1104I	CTCTTC	2 cut(s)	95, 495
EarI	CTCTTC	2 cut(s)	95, 495
EciI	GGCGGA	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	336, 549
EcoRV	GATATC	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	3 cut(s)	180, 193, 628
FaiI	YATR	4 cut(s)	178, 191, 535, 626
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	3 cut(s)	176, 189, 624
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	7 cut(s)	78, 81, 106, 181, 217, 220, 420
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	7 cut(s)	78, 81, 106, 181, 217, 220, 420
GlaI	GCGC	5 cut(s)	184, 210, 229, 418, 441
GluI	GCNGC	7 cut(s)	78, 81, 106, 181, 217, 220, 420
HaeII	RGCGCY	2 cut(s)	186, 212
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	6 cut(s)	26, 50, 159, 172, 186, 437
HhaI	GCGC	5 cut(s)	185, 211, 230, 419, 442
Hin1II	CATG	3 cut(s)	180, 193, 628
Hin6I	GCGC	5 cut(s)	183, 209, 228, 417, 440
HinP1I	GCGC	5 cut(s)	183, 209, 228, 417, 440
HincII	GTYRAC	2 cut(s)	238, 246
HindII	GTYRAC	2 cut(s)	238, 246
HinfI	GANTC	4 cut(s)	19, 53, 247, 346
HpaII	CCGG	6 cut(s)	26, 50, 159, 172, 186, 437
HphI	GGTGA	3 cut(s)	39, 79, 152
Hpy166II	GTNNAC	5 cut(s)	38, 118, 238, 246, 460
Hpy188I	TCNGA	2 cut(s)	67, 351
Hpy188III	TCNNGA	2 cut(s)	259, 476
Hpy8I	GTNNAC	5 cut(s)	38, 118, 238, 246, 460
Hpy99I	CGWCG	5 cut(s)	125, 128, 131, 134, 137
HpyAV	CCTTC	4 cut(s)	265, 316, 485, 610
HpyCH4III	ACNGT	2 cut(s)	71, 464
HpyCH4IV	ACGT	3 cut(s)	34, 412, 456
HpyCH4V	TGCA	4 cut(s)	180, 369, 524, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 177, 186, 225
HpySE526I	ACGT	3 cut(s)	34, 412, 456
Hsp92II	CATG	3 cut(s)	180, 193, 628
HspAI	GCGC	5 cut(s)	183, 209, 228, 417, 440
KroI	GCCGGC	2 cut(s)	185, 436
KroNI	GCCGGC	2 cut(s)	187, 438
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	192, 472
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	3 cut(s)	74, 161, 372
Lsp1109I	GCAGC	3 cut(s)	192, 203, 206
LweI	GCATC	1 cut(s)	415
MabI	ACCWGGT	1 cut(s)	549
MaeII	ACGT	3 cut(s)	34, 412, 456
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	194, 474
MboI	GATC	2 cut(s)	192, 472
MboII	GAAGA	8 cut(s)	109, 112, 325, 328, 331, 391, 509, 512
MhlI	GDGCHC	2 cut(s)	17, 158
MluCI	AATT	3 cut(s)	431, 542, 628
MlyI	GAGTC	2 cut(s)	13, 241
MmeI	TCCRAC	1 cut(s)	519
MroNI	GCCGGC	2 cut(s)	185, 436
MspI	CCGG	6 cut(s)	26, 50, 159, 172, 186, 437
MspR9I	CCNGG	2 cut(s)	338, 551
MvaI	CCWGG	2 cut(s)	338, 551
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	168, 177, 186, 225
NaeI	GCCGGC	2 cut(s)	187, 438
NdeII	GATC	2 cut(s)	192, 472
NgoMIV	GCCGGC	2 cut(s)	185, 436
NlaIII	CATG	3 cut(s)	180, 193, 628
NlaIV	GGNNCC	2 cut(s)	30, 76
NmuCI	GTSAC	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	4 cut(s)	126, 129, 201, 409
PdiI	GCCGGC	2 cut(s)	187, 438
PfeI	GAWTC	2 cut(s)	53, 346
PkrI	GCNGC	7 cut(s)	79, 82, 107, 182, 218, 221, 421
PleI	GAGTC	2 cut(s)	13, 241
PpsI	GAGTC	2 cut(s)	13, 241
Ppu21I	YACGTR	2 cut(s)	35, 457
Psp1406I	AACGTT	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	336, 549
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	336, 549
PspN4I	GGNNCC	2 cut(s)	30, 76
RsaI	GTAC	3 cut(s)	167, 461, 548
RsaNI	GTAC	3 cut(s)	166, 460, 547
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	7 cut(s)	78, 81, 106, 181, 217, 220, 420
Sau3AI	GATC	2 cut(s)	192, 472
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	13, 241
ScrFI	CCNGG	2 cut(s)	338, 551
SduI	GDGCHC	2 cut(s)	17, 158
SetI	ASST	7 cut(s)	37, 243, 390, 415, 459, 555, 621
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	415
Sse9I	AATT	3 cut(s)	431, 542, 628
SsiI	CCGC	6 cut(s)	78, 81, 106, 138, 419, 422
StyD4I	CCNGG	2 cut(s)	336, 549
TaaI	ACNGT	2 cut(s)	71, 464
TaiI	ACGT	3 cut(s)	37, 415, 459
TaqI	TCGA	2 cut(s)	56, 150
TasI	AATT	3 cut(s)	431, 542, 628
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	4 cut(s)	80, 83, 108, 422
TfiI	GAWTC	2 cut(s)	53, 346
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	180, 216, 219
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.