Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Reverse (-)

1058383 .. 1061140

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATACACACTTGTGAAAAAATGGCTTCTCTTCTCTTCCTCCAACCTCTCAACAATCTCTCTTCCTCCACCACCCTCGCCTTTCTCCGTAATCCCCACCACATCCCCACTTCAACCTCCCTTAAACCCTCCAACACCCCCAAACCCCTCACATTCAAATCCTTCACCACTTCCTTCTCCCTCGCCGAATCCGACTCCCCCAAATCTTTACAACCCGAAATCCGACCCGTCCTCCAAGAACTCGCTGACAGCTTTGATCTTCCTCCGGACTACTTTGCTAAGCTGCCTAACGATCTTCGTCTCGACCTGAATGACGCTGCTTTTGACCTTTCAAATGGAAAGATCATTGATGAGTGTGGTCAAGAGTTGGGAGAGACATTGTTAAATCTCTCTCGTGCATGGGAAGTAGCTGACACGTCAACGTCGCATAGTTTAGCTAGCAAGCTCCCTGACTTGGAAGAATCTTTGACAGACAATGCCAAATCAGCACTTGGGAAGCGTTTGGTTTCGGCTGGAAGAAGGTTCCAGTCTATGGGACAGTATGGTGAAGGTGAACTACAAAAGATTGCAAAAACACTGACCAGGGCCGGAAAGCTTCTATCTGCAAGTTCAACTTCCACTGTGACTGATGCAGAACCAAAGAATGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGAAAAAGCTACTGTTGGGGCTATCATCAGCTTTGCCTTTGGGATTCTTTCATGGCAACTGGCTCAAGGTGTCCAAAACACCCCAGAGAGTTCATTGCAGTATGCAAACGACAATGCTTTGCTGCTGGCTAAGTCTTTGAGGGGAGCTCTACTTGCAGCCTGCTATTCCTCAGCCTTATTGTCTGCTTTTACTACCTTTGGACTTATCTTACTTGGAAGGCAACTAAAGTCACCAAAAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

312

Amino Acids

33.84

Weight (kDa)

6.14

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccIII	TCCGGA	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	659, 680
AfiI	CCNNNNNNNGG	2 cut(s)	454, 532
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	114, 157, 333, 612
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	581
AleI	CACNNNNGTG	1 cut(s)	12
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	2 cut(s)	305, 368
Ama87I	CYCGRG	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	4 cut(s)	283, 317, 814, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	157, 557, 563, 915
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	841
BbvCI	CCTCAGC	1 cut(s)	862
BbvI	GCAGC	4 cut(s)	270, 304, 801, 860
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	305, 368
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	4 cut(s)	284, 318, 815, 849
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	285, 319, 816, 850
Bme1390I	CCNGG	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	2 cut(s)	619, 645
BmtI	GCTAGC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	823, 855
Bpu10I	CCTNAGC	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 532
Bse1I	ACTGG	2 cut(s)	526, 756
Bse3DI	GCAATG	1 cut(s)	785
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	102, 660
BseLI	CCNNNNNNNGG	2 cut(s)	454, 532
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	2 cut(s)	526, 756
BseXI	GCAGC	4 cut(s)	270, 304, 801, 860
BshFI	GGCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	266, 588
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	454, 532
BsmAI	GTCTC	2 cut(s)	305, 368
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	587
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	256, 292, 342
Bsp1720I	GCTNAGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	1 cut(s)	875
BspEI	TCCGGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	526, 756
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	256, 292, 342
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	3 cut(s)	540, 622, 706
Bst6I	CTCTTC	3 cut(s)	36, 41, 67
BstC8I	GCNNGC	4 cut(s)	439, 443, 819, 853
BstDEI	CTNAG	3 cut(s)	279, 822, 862
BstF5I	GGATG	2 cut(s)	102, 660
BstKTI	GATC	3 cut(s)	259, 295, 345
BstMAI	GTCTC	2 cut(s)	305, 368
BstMBI	GATC	3 cut(s)	256, 292, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 845
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	581
BstV1I	GCAGC	4 cut(s)	270, 304, 801, 860
BsuRI	GGCC	1 cut(s)	587
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	102, 660
BtsIMutI	CAGTG	2 cut(s)	575, 618
Cac8I	GCNNGC	4 cut(s)	439, 443, 819, 853
Cfr13I	GGNCC	1 cut(s)	585
CseI	GACGC	1 cut(s)	323
CviAII	CATG	2 cut(s)	399, 744
DdeI	CTNAG	3 cut(s)	279, 822, 862
DpnI	GATC	3 cut(s)	258, 294, 344
DpnII	GATC	3 cut(s)	256, 292, 342
Eam1104I	CTCTTC	3 cut(s)	36, 41, 67
EarI	CTCTTC	3 cut(s)	36, 41, 67
Ecl136II	GAGCTC	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	839
Eco57I	CTGAAG	2 cut(s)	659, 680
Eco88I	CYCGRG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	841
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	2 cut(s)	402, 747
FaiI	YATR	6 cut(s)	400, 429, 533, 543, 745, 795
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	2 cut(s)	398, 743
Fnu4HI	GCNGC	4 cut(s)	284, 318, 815, 849
FokI	GGATG	2 cut(s)	89, 667
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	4 cut(s)	284, 318, 815, 849
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	4 cut(s)	284, 318, 815, 849
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	2 cut(s)	266, 588
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	402, 747
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	4 cut(s)	188, 194, 461, 736
HpaII	CCGG	2 cut(s)	266, 588
HphI	GGTGA	4 cut(s)	157, 557, 563, 915
Hpy166II	GTNNAC	2 cut(s)	420, 554
Hpy188I	TCNGA	3 cut(s)	193, 224, 694
Hpy188III	TCNNGA	3 cut(s)	266, 302, 362
Hpy8I	GTNNAC	2 cut(s)	420, 554
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	5 cut(s)	172, 184, 513, 542, 903
HpyCH4III	ACNGT	3 cut(s)	540, 622, 706
HpyCH4IV	ACGT	2 cut(s)	416, 422
HpyCH4V	TGCA	7 cut(s)	398, 569, 605, 632, 790, 797, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 845
HpyF3I	CTNAG	3 cut(s)	279, 822, 862
HpySE526I	ACGT	2 cut(s)	416, 422
Hsp92II	CATG	2 cut(s)	402, 747
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	256, 292, 342
LmnI	GCTCC	2 cut(s)	450, 836
Lsp1109I	GCAGC	4 cut(s)	270, 304, 801, 860
LweI	GCATC	2 cut(s)	619, 645
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	2 cut(s)	416, 422
MaeIII	GTNAC	2 cut(s)	622, 921
MalI	GATC	3 cut(s)	258, 294, 344
MboI	GATC	3 cut(s)	256, 292, 342
MboII	GAAGA	7 cut(s)	23, 28, 54, 251, 287, 470, 528
MhlI	GDGCHC	1 cut(s)	841
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	4 cut(s)	67, 156, 216, 247
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	2 cut(s)	123, 383
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	266, 588
MspR9I	CCNGG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	485, 845
NdeII	GATC	3 cut(s)	256, 292, 342
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	2 cut(s)	402, 747
NlaIV	GGNNCC	1 cut(s)	524
NmuCI	GTSAC	2 cut(s)	622, 921
OliI	CACNNNNGTG	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	188, 461, 736
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	285, 319, 816, 850
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	1 cut(s)	524
PspPI	GGNCC	1 cut(s)	585
PspXI	VCTCGAGB	1 cut(s)	680
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	123, 383
SatI	GCNGC	4 cut(s)	284, 318, 815, 849
Sau3AI	GATC	3 cut(s)	256, 292, 342
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	2 cut(s)	619, 645
Sfr274I	CTCGAG	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	680, 756
SmoI	CTYRAG	2 cut(s)	680, 756
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	540, 622, 706
TaiI	ACGT	2 cut(s)	419, 425
TaqI	TCGA	2 cut(s)	303, 681
TfiI	GAWTC	3 cut(s)	188, 461, 736
Tru1I	TTAA	2 cut(s)	123, 383
Tru9I	TTAA	2 cut(s)	123, 383
TscAI	CASTG	2 cut(s)	582, 625
TseFI	GTSAC	2 cut(s)	622, 921
TseI	GCWGC	4 cut(s)	283, 317, 814, 848
Tsp45I	GTSAC	2 cut(s)	622, 921
TspDTI	ATGAA	3 cut(s)	660, 732, 774
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	582, 625
Van91I	CCANNNNNTGG	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	680
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.