Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Reverse (-)

1048250 .. 1053639

Gene Structure 5390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATACACACTTGCGAAAAAATGGCTTCTCTTCTCTTCCTCCAACCTCTCACCAATCTCTCTTCCTCCACCACCCTCGTCTTTCTCCGTAATCCCCACCACATCCCCACTTCAACCTCCCTTAAACCCTCCAACACCCCCAAACCCCTCACATTCAAATCCTTCACCACTTCCTTCTCCCTCGCCGAATCCGACTCCCCCAAATCTTTACAACCCGAAATCCGACCCGTCCTCCAAGAACTCGCTGACAGCTTTGATCTTCCTCCGGACTACTTTGCTAAGCTGCCTAACGATCTTCGTCGCGACCTGAATGACGCTGCTTTTGACCTTTCAAATGGAAAGATCATTGATGAGTGTGGTCAAGAGTTGGGGGAGACATTGTTAAATCTCTCTCGTGCATGGGAAGTAGCTGACACATCAATGTCGCATAGTTTAGCTAGCAAGCTCCCTGACTTGGAAGAATCTTTGACAGACAATGCCAAATCAGCACTTGGGAAGCGTTTGGTTTCGGCTGGAAGAAGGTTCCAGTCTATGGGACAGTATGGTGAAGGCGAACTACAAAAGATTGCAAAAACACTGACCAGGGCCGGAAAGCTTCTATCTGCAAGTTCAACTTCCACTGTGACTGATACAGAACCAAAGAATGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGAAAAAGCTACTGTTGGGGCTATCATCAGCTTTGCCTTCGGGATTCTTTCATGGCAACTGGCTCAAGGCGTCCAAAACACCCCAGAGAGTTCATTGCAGTATGCAAATGACAATGCTTTGCTGCTGGCTAAGTCTTTGAGGGGAGCTCTACTTGCAGCCTGCTATTCCTCAGCCTTATTGTCTGCTTTTACTACCTTCGGACTTATCTTACTTGGAAGGCAACTAAAGTCACCAAAAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

312

Amino Acids

33.96

Weight (kDa)

6.46

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccII	CGCG	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	659, 680
AcyI	GRCGYC	1 cut(s)	762
AfiI	CCNNNNNNNGG	2 cut(s)	454, 532
AgsI	TTSAA	4 cut(s)	114, 157, 333, 612
AjnI	CCWGG	1 cut(s)	581
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	4 cut(s)	283, 317, 814, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	43, 157, 557, 915
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	841
BbvCI	CCTCAGC	1 cut(s)	862
BbvI	GCAGC	4 cut(s)	270, 304, 801, 860
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	4 cut(s)	284, 318, 815, 849
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	285, 319, 816, 850
Bme1390I	CCNGG	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	1 cut(s)	645
BmtI	GCTAGC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	823, 855
Bpu10I	CCTNAGC	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 532
Bse1I	ACTGG	2 cut(s)	526, 756
Bse3DI	GCAATG	1 cut(s)	785
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	102, 660
BseLI	CCNNNNNNNGG	2 cut(s)	454, 532
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	2 cut(s)	526, 756
BseXI	GCAGC	4 cut(s)	270, 304, 801, 860
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	266, 588
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	454, 532
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	587
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	256, 292, 342
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp68I	TCGCGA	1 cut(s)	303
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	1 cut(s)	875
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	526, 756
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	256, 292, 342
BssNI	GRCGYC	1 cut(s)	762
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	3 cut(s)	540, 622, 706
Bst6I	CTCTTC	3 cut(s)	36, 41, 67
BstACI	GRCGYC	1 cut(s)	762
BstC8I	GCNNGC	4 cut(s)	439, 443, 819, 853
BstDEI	CTNAG	3 cut(s)	279, 822, 862
BstF5I	GGATG	2 cut(s)	102, 660
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	259, 295, 345
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	3 cut(s)	256, 292, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 845
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	581
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	4 cut(s)	270, 304, 801, 860
BsuRI	GGCC	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	102, 660
BtsIMutI	CAGTG	2 cut(s)	575, 618
BtuMI	TCGCGA	1 cut(s)	303
Cac8I	GCNNGC	4 cut(s)	439, 443, 819, 853
Cfr13I	GGNCC	1 cut(s)	585
CseI	GACGC	2 cut(s)	323, 751
CviAII	CATG	2 cut(s)	399, 744
DdeI	CTNAG	3 cut(s)	279, 822, 862
DpnI	GATC	3 cut(s)	258, 294, 344
DpnII	GATC	3 cut(s)	256, 292, 342
Eam1104I	CTCTTC	3 cut(s)	36, 41, 67
EarI	CTCTTC	3 cut(s)	36, 41, 67
Ecl136II	GAGCTC	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	839
Eco57I	CTGAAG	2 cut(s)	659, 680
Eco88I	CYCGRG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	841
FaeI	CATG	2 cut(s)	402, 747
FaiI	YATR	6 cut(s)	400, 429, 533, 543, 745, 795
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	2 cut(s)	398, 743
Fnu4HI	GCNGC	4 cut(s)	284, 318, 815, 849
FokI	GGATG	2 cut(s)	89, 667
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	4 cut(s)	284, 318, 815, 849
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	4 cut(s)	284, 318, 815, 849
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	2 cut(s)	266, 588
HgaI	GACGC	2 cut(s)	323, 751
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	2 cut(s)	402, 747
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	4 cut(s)	188, 194, 461, 736
HpaII	CCGG	2 cut(s)	266, 588
HphI	GGTGA	4 cut(s)	43, 157, 557, 915
Hpy188I	TCNGA	4 cut(s)	193, 224, 694, 893
Hpy188III	TCNNGA	4 cut(s)	266, 302, 362, 733
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	7 cut(s)	172, 184, 513, 542, 739, 898, 903
HpyCH4III	ACNGT	3 cut(s)	540, 622, 706
HpyCH4V	TGCA	6 cut(s)	398, 569, 605, 790, 797, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 845
HpyF3I	CTNAG	3 cut(s)	279, 822, 862
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	2 cut(s)	402, 747
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	256, 292, 342
LmnI	GCTCC	2 cut(s)	450, 836
Lsp1109I	GCAGC	4 cut(s)	270, 304, 801, 860
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	622, 921
MalI	GATC	3 cut(s)	258, 294, 344
MboI	GATC	3 cut(s)	256, 292, 342
MboII	GAAGA	7 cut(s)	23, 28, 54, 251, 287, 470, 528
MhlI	GDGCHC	1 cut(s)	841
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	4 cut(s)	67, 156, 216, 247
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	2 cut(s)	123, 383
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	2 cut(s)	266, 588
MspR9I	CCNGG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	583
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	485, 845
NdeII	GATC	3 cut(s)	256, 292, 342
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	2 cut(s)	402, 747
NlaIV	GGNNCC	1 cut(s)	524
NmuCI	GTSAC	2 cut(s)	622, 921
NruI	TCGCGA	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	188, 461, 736
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	285, 319, 816, 850
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	1 cut(s)	524
PspPI	GGNCC	1 cut(s)	585
PspXI	VCTCGAGB	1 cut(s)	680
RruI	TCGCGA	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	123, 383
SatI	GCNGC	4 cut(s)	284, 318, 815, 849
Sau3AI	GATC	3 cut(s)	256, 292, 342
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	680, 756
SmoI	CTYRAG	2 cut(s)	680, 756
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	540, 622, 706
TaqI	TCGA	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	188, 461, 736
Tru1I	TTAA	2 cut(s)	123, 383
Tru9I	TTAA	2 cut(s)	123, 383
TscAI	CASTG	2 cut(s)	582, 625
TseFI	GTSAC	2 cut(s)	622, 921
TseI	GCWGC	4 cut(s)	283, 317, 814, 848
Tsp45I	GTSAC	2 cut(s)	622, 921
TspDTI	ATGAA	3 cut(s)	660, 732, 774
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	582, 625
Van91I	CCANNNNNTGG	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	680
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.