Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Forward (+)

30041379 .. 30044112

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G353000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTTCTCTTACCTTCCTTCAACCTCTCTCCAATCTCTCTTCCCCTACCACCCTCGTCTCTCTCAAAAATCCCCACCATATCCCTTCTTTTACTTCTCTAAATCCCTCCATTATCCCCAAAACCCGTCCATTCAAATCTTTCACAGCCTCATTCTCTCTTGCAGAATCAAACTCCCCCAAATCCTTACAGCCCAATCTTCAGCCTTTCCTCCAAGAACTTGCTGATAGTTTCGATCTTCCACAAGACTACTTTGCGCAGCTTCCGAGCGATCTCCGTCTCGATCTGAACGATGCAGCTTTTGATCTTTCAAATGGACGGGTCATTGATGAGTGTGGTCAAGAGTTGGGAGAGACATTGTTAAATCTCTCTCGTGCATGGGAAGCAGCTGACACATCAACTTCCCATGCCTTAGCTAGACAGCTCCCTGGGCTGGAGGAATCTTTGACAGGCAATGCCAAATCAGCATTTGGGAAGCGTCTGGTTTCTGCTGGAAGAAGGTTCCAGTCTATGGGACAGTATGGTCAAGGTGAACTACAAAAGATTGCAAAAGTAATGATTACAACTGGAAGGGTTCTATCTGAAAGTTCAACATCCACGGTCACTGATGAACAACCAAAGAAGGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGATAAAGCAATCATTGGGGCTATAATCAGCGTTGGTTTTGGAATTCTTTCATGGGAGCTAGCTCAGGGGATCCAAAACATCCCAGAGAGTTCGTTGCAGTATGCAAATGAGAACGCTTTGATGCTGGCTAAGTCTTTGAGAGGAGCTCTACTTGCAGTCTGTTATTCATCAGCATTCTTGTCTGCTCTTACTAGTGTTGGACTTGTCTTACTTGGAAGACAACTAAAGTCATCAAAAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

306

Amino Acids

33.03

Weight (kDa)

6.34

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	522
Acc16I	TGCGCA	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	511
AclWI	GGATC	2 cut(s)	736, 749
AcsI	RAATTY	1 cut(s)	714
AcuI	CTGAAG	3 cut(s)	185, 638, 659
AfiI	CCNNNNNNNGG	2 cut(s)	433, 511
AgsI	TTSAA	4 cut(s)	23, 136, 312, 591
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	1 cut(s)	427
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	3 cut(s)	64, 284, 347
AlwI	GGATC	2 cut(s)	736, 749
Ama87I	CYCGRG	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	259, 296, 386
ApoI	RAATTY	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	718
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	542
AsuNHI	GCTAGC	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	659
BamHI	GGATCC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	820
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	820
BbvI	GCAGC	3 cut(s)	271, 308, 398
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	3 cut(s)	64, 284, 347
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	3 cut(s)	417, 731, 864
BisI	GCNGC	3 cut(s)	260, 297, 387
BlsI	GCNGC	3 cut(s)	261, 298, 388
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	659
BmiI	GGNNCC	2 cut(s)	503, 743
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	3 cut(s)	283, 624, 783
BmtI	GCTAGC	1 cut(s)	734
BpiI	GAAGAC	1 cut(s)	895
BplI	GAGNNNNNCTC	2 cut(s)	802, 834
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	412, 735
BsaJI	CCNNGG	3 cut(s)	427, 428, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 511
Bse1I	ACTGG	2 cut(s)	505, 571
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	427, 428, 597
BseGI	GGATG	3 cut(s)	593, 639, 750
BseLI	CCNNNNNNNGG	2 cut(s)	433, 511
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	2 cut(s)	505, 571
BseRI	GAGGAG	1 cut(s)	828
BseXI	GCAGC	3 cut(s)	271, 308, 398
BsiHKAI	GWGCWC	1 cut(s)	820
BsiHKCI	CYCGRG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	433, 511
BsmAI	GTCTC	3 cut(s)	64, 284, 347
BsmBI	CGTCTC	2 cut(s)	64, 284
BsmFI	GGGAC	1 cut(s)	528
BsmI	GAATGC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	5 cut(s)	235, 271, 283, 304, 741
BspCNI	CTCAG	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	503, 743
BspOI	GCTAGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	736, 749
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	505, 571
BssECI	CCNNGG	3 cut(s)	427, 428, 597
BssMI	GATC	5 cut(s)	235, 271, 283, 304, 741
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	519, 601
Bst6I	CTCTTC	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	732, 798
BstDEI	CTNAG	3 cut(s)	412, 735, 801
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	593, 639, 750
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	5 cut(s)	238, 274, 286, 307, 744
BstMAI	GTCTC	3 cut(s)	64, 284, 347
BstMBI	GATC	5 cut(s)	235, 271, 283, 304, 741
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 430, 464, 824
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	3 cut(s)	271, 308, 398
BstV2I	GAAGAC	1 cut(s)	895
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	593, 639, 750
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	732, 798
CfoI	GCGC	1 cut(s)	259
CseI	GACGC	1 cut(s)	467
CviAII	CATG	3 cut(s)	378, 407, 723
DdeI	CTNAG	3 cut(s)	412, 735, 801
DpnI	GATC	5 cut(s)	237, 273, 285, 306, 743
DpnII	GATC	5 cut(s)	235, 271, 283, 304, 741
DrdI	GACNNNNNNGTC	1 cut(s)	522
DseDI	GACNNNNNNGTC	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	818
Eco24I	GRGCYC	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	818
Eco57I	CTGAAG	3 cut(s)	185, 638, 659
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	820
Esp3I	CGTCTC	2 cut(s)	64, 284
FaeI	CATG	3 cut(s)	381, 410, 726
FaiI	YATR	8 cut(s)	81, 379, 408, 512, 522, 695, 724, 774
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	3 cut(s)	377, 406, 722
Fnu4HI	GCNGC	3 cut(s)	260, 297, 387
FokI	GGATG	3 cut(s)	580, 646, 737
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	3 cut(s)	260, 297, 387
FspBI	CTAG	3 cut(s)	417, 731, 864
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	260, 297, 387
GsuI	CTGGAG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	3 cut(s)	381, 410, 726
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	2 cut(s)	167, 440
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	4 cut(s)	267, 288, 583, 673
Hpy188III	TCNNGA	2 cut(s)	281, 341
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	6 cut(s)	25, 29, 96, 492, 564, 616
HpyCH4III	ACNGT	2 cut(s)	519, 601
HpyCH4V	TGCA	7 cut(s)	164, 296, 377, 548, 769, 776, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 430, 464, 824
HpyF3I	CTNAG	3 cut(s)	412, 735, 801
Hsp92II	CATG	3 cut(s)	381, 410, 726
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	5 cut(s)	235, 271, 283, 304, 741
LmnI	GCTCC	3 cut(s)	429, 727, 815
Lsp1109I	GCAGC	3 cut(s)	271, 308, 398
LweI	GCATC	3 cut(s)	283, 624, 783
MaeI	CTAG	3 cut(s)	417, 731, 864
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	5 cut(s)	237, 273, 285, 306, 743
MboI	GATC	5 cut(s)	235, 271, 283, 304, 741
MboII	GAAGA	5 cut(s)	33, 191, 230, 507, 900
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	1 cut(s)	714
MmeI	TCCRAC	1 cut(s)	850
MnlI	CCTC	7 cut(s)	36, 65, 118, 160, 221, 430, 806
MroXI	GAANNNNTTC	1 cut(s)	718
MseI	TTAA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	383, 430, 464, 824
NdeII	GATC	5 cut(s)	235, 271, 283, 304, 741
NheI	GCTAGC	1 cut(s)	730
NlaIII	CATG	3 cut(s)	381, 410, 726
NlaIV	GGNNCC	2 cut(s)	503, 743
NmuCI	GTSAC	1 cut(s)	601
NsbI	TGCGCA	1 cut(s)	258
PaeR7I	CTCGAG	1 cut(s)	659
PasI	CCCWGGG	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	845
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	2 cut(s)	167, 440
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	261, 298, 388
Psp124BI	GAGCTC	1 cut(s)	820
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	503, 743
PspXI	VCTCGAGB	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	741
PvuII	CAGCTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	820
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	3 cut(s)	260, 297, 387
Sau3AI	GATC	5 cut(s)	235, 271, 283, 304, 741
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	283, 624, 783
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	1 cut(s)	714
SspMI	CTAG	3 cut(s)	417, 731, 864
SstI	GAGCTC	1 cut(s)	820
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	519, 601
TaqI	TCGA	3 cut(s)	234, 282, 660
TasI	AATT	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	167, 440
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	3 cut(s)	259, 296, 386
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	624, 711, 828
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	511
XapI	RAATTY	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	3 cut(s)	417, 731, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.