Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Reverse (-)

820093 .. 823278

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTTCTCTTCTCTTCCTCCAACCTCTCACCAATCTCTCTTCCTCCACCGCCCTCGTCTTTCTCCGAAATCCCCACCACGTCCCCGCTTCGACCTCCCTTAAACCCAAACCCCTCCTCACATTCAAAACTCTCACCACTTGTTTCTCCCTCGCCGAATCCGACTCCCCCAAATCTTTGCAACCCGAAACCCGAACCGTCCTCCAAGACCTCGCTGACAGCTTTGATCTCCCTCCAGACTACTTTGCGAAGCTTCCCAATGATCTTCGTCTCGATCTGAACGATGCTGCTTTTGACCTTTCAAATGGAAAGATTATCGATGAGTGTGGTCAAGAGTTGGGAGAGACATTATTAAATCTATCTCGTGCATGGGAAGTAGCTGACACATCAACCTCGCATAGTTTAGCTAGCAAGCTCCCTGACTTGGAAGAATCTTTGACAAACAATGCCAAATCAGCACTAGGGAAGCGTTTGGTTTCTGCTGGAAGAAGGTTCCAGTCTATGGGCATGTATGGTCAAGGCGAACTGCAAAAGATTGCAAAAACAATGACTACGGCCGGAAAGCTTCTATCTGCAAGTCCAACATCCACAATGACCGATGAAGAACCAAAGAATGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGAAAAAGCTACCATCGGGGCTATCATCAGCTTTGCTTTCGGGATTCTTTCATGGCAACTAGCTCAAGGCGTCCAAAATATCCCAGAGAACTCACTGCAGTATGCAAATGACAATGCTTTGCTGCTGGCTAAGTCTTTGAGAGGAGCTCTACTTGCAGCGTGCTATTCCTCAGCCATATTATCTGGTTTTACTACCTTCGGACTTATCTTACTTGGAAGGCAACTAAAGTCACCAAAAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

303

Amino Acids

32.73

Weight (kDa)

6.0

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	2 cut(s)	51, 87
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	2 cut(s)	629, 650
AcyI	GRCGYC	1 cut(s)	732
AfiI	CCNNNNNNNGG	2 cut(s)	424, 502
AgsI	TTSAA	2 cut(s)	127, 303
AjiI	CACGTC	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	811
Alw26I	GTCTC	2 cut(s)	275, 338
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	287, 784, 818
AsuHPI	GGTGA	3 cut(s)	22, 127, 885
AsuNHI	GCTAGC	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	811
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	811
BbvCI	CCTCAGC	1 cut(s)	832
BbvI	GCAGC	3 cut(s)	274, 771, 830
BccI	CCATC	1 cut(s)	683
BceAI	ACGGC	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	275, 338
BfaI	CTAG	3 cut(s)	408, 461, 722
BfmI	CTRYAG	1 cut(s)	758
BisI	GCNGC	3 cut(s)	288, 785, 819
BlsI	GCNGC	3 cut(s)	289, 786, 820
BmeT110I	CYCGRG	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	494
BmsI	GCATC	2 cut(s)	274, 615
BmtI	GCTAGC	1 cut(s)	411
BplI	GAGNNNNNCTC	2 cut(s)	793, 825
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	832
BpuEI	CTTGAG	1 cut(s)	711
Bsa29I	ATCGAT	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 502
Bse1I	ACTGG	1 cut(s)	496
BseCI	ATCGAT	1 cut(s)	318
BseGI	GGATG	2 cut(s)	584, 630
BseLI	CCNNNNNNNGG	2 cut(s)	424, 502
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	2 cut(s)	107, 819
BseX3I	CGGCCG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	274, 771, 830
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	811
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	424, 502
BsmAI	GTCTC	2 cut(s)	275, 338
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	811
Bsp143I	GATC	3 cut(s)	226, 262, 274
BspACI	CCGC	2 cut(s)	51, 87
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	845
BspDI	ATCGAT	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	494
BspMAI	CTGCAG	1 cut(s)	762
BspOI	GCTAGC	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	496
BssMI	GATC	3 cut(s)	226, 262, 274
BssNI	GRCGYC	1 cut(s)	732
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	15, 20, 46
BstACI	GRCGYC	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	409, 413, 789, 823
BstDEI	CTNAG	2 cut(s)	792, 832
BstF5I	GGATG	2 cut(s)	584, 630
BstKTI	GATC	3 cut(s)	229, 265, 277
BstMAI	GTCTC	2 cut(s)	275, 338
BstMBI	GATC	3 cut(s)	226, 262, 274
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 815
BstNSI	RCATGY	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	758
BstV1I	GCAGC	3 cut(s)	274, 771, 830
BstZI	CGGCCG	1 cut(s)	555
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	557
BsuTUI	ATCGAT	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	584, 630
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	1 cut(s)	755
Cac8I	GCNNGC	4 cut(s)	409, 413, 789, 823
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	1 cut(s)	721
CviAII	CATG	3 cut(s)	369, 508, 714
DdeI	CTNAG	2 cut(s)	792, 832
DpnI	GATC	3 cut(s)	228, 264, 276
DpnII	GATC	3 cut(s)	226, 262, 274
EaeI	YGGCCR	1 cut(s)	555
EagI	CGGCCG	1 cut(s)	555
Eam1104I	CTCTTC	3 cut(s)	15, 20, 46
EarI	CTCTTC	3 cut(s)	15, 20, 46
Ecl136II	GAGCTC	1 cut(s)	809
EclXI	CGGCCG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	811
Eco52I	CGGCCG	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	809
Eco57I	CTGAAG	2 cut(s)	629, 650
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	809
EcoT38I	GRGCYC	1 cut(s)	811
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	3 cut(s)	372, 511, 717
FaiI	YATR	8 cut(s)	370, 399, 503, 509, 513, 715, 765, 839
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	3 cut(s)	368, 507, 713
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	288, 785, 819
FokI	GGATG	2 cut(s)	571, 637
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	3 cut(s)	288, 785, 819
FspBI	CTAG	3 cut(s)	408, 461, 722
GluI	GCNGC	3 cut(s)	288, 785, 819
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	721
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	3 cut(s)	372, 511, 717
HindIII	AAGCTT	2 cut(s)	251, 563
HinfI	GANTC	4 cut(s)	158, 164, 431, 706
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	3 cut(s)	22, 127, 885
Hpy188I	TCNGA	5 cut(s)	68, 163, 279, 664, 863
Hpy188III	TCNNGA	4 cut(s)	236, 272, 332, 703
HpyAV	CCTTC	3 cut(s)	483, 868, 873
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	8 cut(s)	181, 368, 529, 539, 575, 760, 767, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 815
HpyF3I	CTNAG	2 cut(s)	792, 832
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	3 cut(s)	372, 511, 717
Kzo9I	GATC	3 cut(s)	226, 262, 274
LmnI	GCTCC	2 cut(s)	420, 806
LpnPI	CCDG	9 cut(s)	249, 432, 468, 509, 571, 607, 759, 773, 831
Lsp1109I	GCAGC	3 cut(s)	274, 771, 830
LweI	GCATC	2 cut(s)	274, 615
MaeI	CTAG	3 cut(s)	408, 461, 722
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	891
MalI	GATC	3 cut(s)	228, 264, 276
MboI	GATC	3 cut(s)	226, 262, 274
MboII	GAAGA	6 cut(s)	7, 33, 257, 440, 498, 614
MhlI	GDGCHC	1 cut(s)	811
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	3 cut(s)	46, 186, 605
MseI	TTAA	2 cut(s)	102, 353
MspI	CCGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	455, 815
NdeII	GATC	3 cut(s)	226, 262, 274
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	3 cut(s)	372, 511, 717
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	891
NspI	RCATGY	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 279
PfeI	GAWTC	3 cut(s)	158, 431, 706
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	289, 786, 820
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	494
PspXI	VCTCGAGB	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	762
SacI	GAGCTC	1 cut(s)	811
SaqAI	TTAA	2 cut(s)	102, 353
SatI	GCNGC	3 cut(s)	288, 785, 819
Sau3AI	GATC	3 cut(s)	226, 262, 274
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	811
SfaNI	GCATC	2 cut(s)	274, 615
SfcI	CTRYAG	1 cut(s)	758
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	2 cut(s)	650, 726
SmoI	CTYRAG	2 cut(s)	650, 726
SsiI	CCGC	2 cut(s)	51, 87
SspMI	CTAG	3 cut(s)	408, 461, 722
SstI	GAGCTC	1 cut(s)	811
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	92, 273, 318, 651
TaqII	GACCGA	1 cut(s)	611
TfiI	GAWTC	3 cut(s)	158, 431, 706
Tru1I	TTAA	2 cut(s)	102, 353
Tru9I	TTAA	2 cut(s)	102, 353
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	891
TseI	GCWGC	3 cut(s)	287, 784, 818
Tsp45I	GTSAC	1 cut(s)	891
TspDTI	ATGAA	3 cut(s)	615, 630, 702
TspRI	CASTG	1 cut(s)	762
Van91I	CCANNNNNTGG	1 cut(s)	502
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	650
XspI	CTAG	3 cut(s)	408, 461, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.