Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004874.1

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Forward (+)

72830 .. 74391

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004874.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcttctcttctcttcctccaacctctcaccaatctctcttcctccaccaccctcgtctttctccgtaatccccaccacatccccacttcaacctcccttaaaccctccaacacccccaaacccctcacattcaaatccttcactacttccttctccctcgccgaatccgactcccccaaatctttacaacccgaaatccgacccgtcctccaagaactcgctgacagctttgatcttcctccggactactttgctaagctgcctaacgatcttcgtctcgacctgaatgacgctgcttttgacctttcaaatggaaagatcattgatgagtgtggtcaagagttgggagagacattgttaaatctctctcgtgcatgggaagtagctgacacgtcaacgtcgcatagtttagctagcaagctccctgacttggaagaatctttgacagacaatgccaaatcagcacttgggaagcgtttggtttcggctggaagaaggttccagtctatgggacagtatggtgaaggcgaactacaaaaggtgtgttacattacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

186

Amino Acids

20.42

Weight (kDa)

5.05

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccIII	TCCGGA	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	433, 511
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	93, 136, 312
AjiI	CACGTC	1 cut(s)	396
AluBI	AGCT	5 cut(s)	231, 262, 389, 416, 424
AluI	AGCT	5 cut(s)	231, 262, 389, 416, 424
Alw26I	GTCTC	2 cut(s)	284, 347
Aor13HI	TCCGGA	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	262, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsuHPI	GGTGA	2 cut(s)	22, 536
AsuNHI	GCTAGC	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	249, 283
BcoDI	GTCTC	2 cut(s)	284, 347
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	2 cut(s)	263, 297
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	2 cut(s)	264, 298
BmgBI	CACGTC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	503
BmtI	GCTAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 511
Bse1I	ACTGG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	244
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	433, 511
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	249, 283
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	433, 511
BsmAI	GTCTC	2 cut(s)	284, 347
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	235, 271, 321
Bsp1720I	GCTNAGC	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	505
BssMI	GATC	3 cut(s)	235, 271, 321
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	3 cut(s)	15, 20, 46
BstC8I	GCNNGC	2 cut(s)	418, 422
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	238, 274, 324
BstMAI	GTCTC	2 cut(s)	284, 347
BstMBI	GATC	3 cut(s)	235, 271, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	249, 283
BtrI	CACGTC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	418, 422
CseI	GACGC	1 cut(s)	302
CviAII	CATG	1 cut(s)	378
CviJI	RGCY	7 cut(s)	5, 231, 262, 389, 416, 424, 491
CviKI_1	RGCY	7 cut(s)	5, 231, 262, 389, 416, 424, 491
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	3 cut(s)	237, 273, 323
DpnII	GATC	3 cut(s)	235, 271, 321
Eam1104I	CTCTTC	3 cut(s)	15, 20, 46
EarI	CTCTTC	3 cut(s)	15, 20, 46
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	1 cut(s)	381
FaiI	YATR	4 cut(s)	379, 408, 512, 522
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	263, 297
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	263, 297
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	2 cut(s)	263, 297
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	167, 173, 440
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	22, 536
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	172, 203
Hpy188III	TCNNGA	3 cut(s)	245, 281, 341
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	151, 163, 492, 521
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	2 cut(s)	395, 401
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	395, 401
Hsp92II	CATG	1 cut(s)	381
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	235, 271, 321
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	5 cut(s)	258, 299, 441, 477, 518
Lsp1109I	GCAGC	2 cut(s)	249, 283
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	2 cut(s)	395, 401
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	237, 273, 323
MboI	GATC	3 cut(s)	235, 271, 321
MboII	GAAGA	6 cut(s)	7, 33, 230, 266, 449, 507
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	4 cut(s)	46, 135, 195, 226
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	102, 362
MspI	CCGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	3 cut(s)	235, 271, 321
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	381
NlaIV	GGNNCC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	167, 440
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	264, 298
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	102, 362
SatI	GCNGC	2 cut(s)	263, 297
Sau3AI	GATC	3 cut(s)	235, 271, 321
SchI	GAGTC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	2 cut(s)	398, 404
TaqI	TCGA	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	167, 440
Tru1I	TTAA	2 cut(s)	102, 362
Tru9I	TTAA	2 cut(s)	102, 362
TseI	GCWGC	2 cut(s)	262, 296
TspGWI	ACGGA	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	511
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.