Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Reverse (-)

47814057 .. 47816807

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTTCTCTTCTCTTCCTCCAACCTCTCACCAATCTCTCTTCCTCCACCACCCTCGTCTTTCTCCGTAATCCCCACCACATCCCCACTTCAACCTCCCTTAAACCCTCCAACACCCCCAAACCCCTCACATTCAAATCCTTCACCACTTCCTTCTCCCTCGCCGAATCCGACTCCCCCAAATCTTTACAACCCGAAATCCGACCCGTCCTCCAAGAACTCGCTGACAGCTTTGATCTTCCTCCGGACTACTTTGCTAAGCTGCCTAACGATCTTCGTCTCGACCTGAATGACGCTGCTTTTGACCTTTCAAATGGAAAGATCATTGATGAGTGTGGTCAAGAGTTGGGAGAGACATTGTTAAATCTCTCTCGTGCATGGGAAGTAGCTGACACGTCAACTTCGCATAGTTTAGCTAGCAAGCTCCCTGACTTGGAAGAATCTTTGACAGACAATGCCAAATCAGCACTTGGGAAGCGTTTGGTTTCGGCTGGAAGAAGGTTCCAGTCTATGGGACAGTATGGTGAAGGCGAACTACAAAAGATTGCAAAAACACTGACCAGGGCCGGAAAGCTTCTATCTGCAAGTTCAACTTCCACTGTGACTGATGCAGAACCAAAGAATGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGAAAAAGCTACTGTTGGGGCTATCATCAGCTTTGCCTTCGGGATTCTTTCATGGCAACTGGCTCAAGGTGTCCAAAACACCCCAGAGAGTTCATTGCAGTATGCAAACGACAATGCTTTGCTGCTGGCTAAGTCTTTGAGGGGAGCTCTACTTGCAGCCTGCTATTTCTCAGCCTTATTGTCTGCTTTTACTACCTTTGGACTTATCTTACTTGGAAGGCAACTAAAGTCACCAAAAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

305

Amino Acids

33.07

Weight (kDa)

6.01

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccIII	TCCGGA	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	638, 659
AfiI	CCNNNNNNNGG	2 cut(s)	433, 511
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	93, 136, 312, 591
AjiI	CACGTC	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	560
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	2 cut(s)	284, 347
Ama87I	CYCGRG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	262, 296, 793, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	4 cut(s)	22, 136, 536, 894
AsuNHI	GCTAGC	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	820
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BauI	CACGAG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	820
BbvI	GCAGC	4 cut(s)	249, 283, 780, 839
BciT130I	CCWGG	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	284, 347
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	4 cut(s)	263, 297, 794, 828
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	4 cut(s)	264, 298, 795, 829
Bme1390I	CCNGG	1 cut(s)	562
BmeT110I	CYCGRG	1 cut(s)	659
BmgBI	CACGTC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	2 cut(s)	598, 624
BmtI	GCTAGC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	802, 834
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 511
Bse1I	ACTGG	2 cut(s)	505, 735
Bse3DI	GCAATG	1 cut(s)	764
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	81, 639
BseLI	CCNNNNNNNGG	2 cut(s)	433, 511
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	2 cut(s)	505, 735
BseXI	GCAGC	4 cut(s)	249, 283, 780, 839
BshFI	GGCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	820
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	245, 567
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	433, 511
BsmAI	GTCTC	2 cut(s)	284, 347
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	235, 271, 321
Bsp1720I	GCTNAGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	854
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	505, 735
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	235, 271, 321
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	3 cut(s)	519, 601, 685
Bst6I	CTCTTC	3 cut(s)	15, 20, 46
BstC8I	GCNNGC	4 cut(s)	418, 422, 798, 832
BstDEI	CTNAG	3 cut(s)	258, 801, 841
BstF5I	GGATG	2 cut(s)	81, 639
BstKTI	GATC	3 cut(s)	238, 274, 324
BstMAI	GTCTC	2 cut(s)	284, 347
BstMBI	GATC	3 cut(s)	235, 271, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 824
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	560
BstV1I	GCAGC	4 cut(s)	249, 283, 780, 839
BsuRI	GGCC	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	81, 639
BtsIMutI	CAGTG	2 cut(s)	554, 597
Cac8I	GCNNGC	4 cut(s)	418, 422, 798, 832
Cfr13I	GGNCC	1 cut(s)	564
CseI	GACGC	1 cut(s)	302
CviAII	CATG	2 cut(s)	378, 723
DdeI	CTNAG	3 cut(s)	258, 801, 841
DpnI	GATC	3 cut(s)	237, 273, 323
DpnII	GATC	3 cut(s)	235, 271, 321
Eam1104I	CTCTTC	3 cut(s)	15, 20, 46
EarI	CTCTTC	3 cut(s)	15, 20, 46
Ecl136II	GAGCTC	1 cut(s)	818
Eco24I	GRGCYC	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	818
Eco57I	CTGAAG	2 cut(s)	638, 659
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	820
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	2 cut(s)	381, 726
FaiI	YATR	6 cut(s)	379, 408, 512, 522, 724, 774
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	2 cut(s)	377, 722
Fnu4HI	GCNGC	4 cut(s)	263, 297, 794, 828
FokI	GGATG	2 cut(s)	68, 646
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	4 cut(s)	263, 297, 794, 828
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	4 cut(s)	263, 297, 794, 828
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	2 cut(s)	245, 567
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	381, 726
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	4 cut(s)	167, 173, 440, 715
HpaII	CCGG	2 cut(s)	245, 567
HphI	GGTGA	4 cut(s)	22, 136, 536, 894
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	172, 203, 673
Hpy188III	TCNNGA	4 cut(s)	245, 281, 341, 712
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	6 cut(s)	151, 163, 492, 521, 718, 882
HpyCH4III	ACNGT	3 cut(s)	519, 601, 685
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	7 cut(s)	377, 548, 584, 611, 769, 776, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 824
HpyF3I	CTNAG	3 cut(s)	258, 801, 841
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	381, 726
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	235, 271, 321
LmnI	GCTCC	2 cut(s)	429, 815
Lsp1109I	GCAGC	4 cut(s)	249, 283, 780, 839
LweI	GCATC	2 cut(s)	598, 624
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	601, 900
MalI	GATC	3 cut(s)	237, 273, 323
MboI	GATC	3 cut(s)	235, 271, 321
MboII	GAAGA	6 cut(s)	7, 33, 230, 266, 449, 507
MhlI	GDGCHC	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	4 cut(s)	46, 135, 195, 226
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	102, 362
MspI	CCGG	2 cut(s)	245, 567
MspR9I	CCNGG	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	464, 824
NdeII	GATC	3 cut(s)	235, 271, 321
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	2 cut(s)	381, 726
NlaIV	GGNNCC	1 cut(s)	503
NmuCI	GTSAC	2 cut(s)	601, 900
PaeR7I	CTCGAG	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	167, 440, 715
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	264, 298, 795, 829
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	820
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	564
PspXI	VCTCGAGB	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	820
SaqAI	TTAA	2 cut(s)	102, 362
SatI	GCNGC	4 cut(s)	263, 297, 794, 828
Sau3AI	GATC	3 cut(s)	235, 271, 321
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	2 cut(s)	598, 624
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	659, 735
SmoI	CTYRAG	2 cut(s)	659, 735
SspMI	CTAG	1 cut(s)	417
SstI	GAGCTC	1 cut(s)	820
StyD4I	CCNGG	1 cut(s)	560
TaaI	ACNGT	3 cut(s)	519, 601, 685
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	282, 660
TfiI	GAWTC	3 cut(s)	167, 440, 715
Tru1I	TTAA	2 cut(s)	102, 362
Tru9I	TTAA	2 cut(s)	102, 362
TscAI	CASTG	2 cut(s)	561, 604
TseFI	GTSAC	2 cut(s)	601, 900
TseI	GCWGC	4 cut(s)	262, 296, 793, 827
Tsp45I	GTSAC	2 cut(s)	601, 900
TspDTI	ATGAA	3 cut(s)	639, 711, 753
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	561, 604
Van91I	CCANNNNNTGG	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.