Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010946

Physical Location & Seq

Genomic Coordinates Forward (+)

32086701 .. 32087765

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1250900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCTCTTGCCTTCCTTCAACCTCTCTCCAATGTCTCTTCCTCTTCAACCCTCCTCTTTCTCCGTAATCCCCACCATATCCCTTCTTCTTCCTCCTCCTTAAAACCCTCCAATTTCCCCAAAACCCTCCCATTCAAATCCCTCACCGCCTCATTCTCCCTCGCAGAATCAGACTCCCCCAAATCTTTCCAACCCAACGGTCCAAGTTTTCAATCTTTCCTCCAAGAATTAGCCGACAGCTTTGATCTTCCACCGGACTACTTTGCGCAGCTTCCTAACGATCTCCGGCTCGATCTGAATGATGCAGCATTTGATCTTTCAAATGGAAGGGTTATCGACGAGTGTGGTCAAGAGTTAGGAGAGACATTGTTAAATCTCTCTCGCGCATGGGAGCAAGCCGATACATCAACTTCCCATGCTTTAGCTAGCAAGCTCCCTGGGTTGGAGGACTCTATGACAGGCAATGCCAAATCAGGCAAGAACAGAGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3082

Protein Analysis

167

Amino Acids

17.93

Weight (kDa)

4.9

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37360
fragaria_vesca	FvH4_6g01461 FvH4_6g01461 FvH4_6g01461
malus_domestica	MD05G1202400.v1.1 MD12G1250900.v1.1 MD12G1251900.v1.1
prunus_persica	Prupe.6G353000_v2.0.a1 Prupe.6G353000_v2.0.a1
pyrus_communis	pycom12g23120
rosa_chinensis	RchiOBHm_Chr3g0449091
rosa_laevigata	RLG00000025853
rosa_multiflora	Rmu_sc0004874.1_g000016 Rmu_sc0006661.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427200
rosa_rugosa	Rorug02G0617900
rosa_samantha	Rh3AG016500 Rh3BG016700 Rh3CG015800 Rh3DG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	26, 54, 142, 218, 327
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	4 cut(s)	246, 277, 431, 439
AluI	AGCT	4 cut(s)	246, 277, 431, 439
Alw26I	GTCTC	2 cut(s)	46, 362
ApeKI	GCWGC	2 cut(s)	274, 311
AspLEI	GCGC	2 cut(s)	274, 392
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	286, 323
BciT130I	CCWGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	46, 362
BfaI	CTAG	1 cut(s)	432
BisI	GCNGC	2 cut(s)	275, 312
BlsI	GCNGC	2 cut(s)	276, 313
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	298
BmtI	GCTAGC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	442, 443
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	442, 443
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	475
BseRI	GAGGAG	2 cut(s)	50, 91
BseXI	GCAGC	2 cut(s)	286, 323
Bsh1236I	CGCG	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	260, 292
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	46, 362
Bsp143I	GATC	4 cut(s)	250, 286, 298, 319
BspACI	CCGC	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	390
BspOI	GCTAGC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	442, 443
BssMI	GATC	4 cut(s)	250, 286, 298, 319
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	49, 55
BstC8I	GCNNGC	3 cut(s)	402, 433, 437
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	2 cut(s)	274, 392
BstKTI	GATC	4 cut(s)	253, 289, 301, 322
BstMAI	GTCTC	2 cut(s)	46, 362
BstMBI	GATC	4 cut(s)	250, 286, 298, 319
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	286, 323
Cac8I	GCNNGC	3 cut(s)	402, 433, 437
CfoI	GCGC	2 cut(s)	274, 392
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	2 cut(s)	393, 422
CviJI	RGCY	8 cut(s)	5, 239, 246, 277, 295, 404, 431, 439
CviKI_1	RGCY	8 cut(s)	5, 239, 246, 277, 295, 404, 431, 439
DpnI	GATC	4 cut(s)	252, 288, 300, 321
DpnII	GATC	4 cut(s)	250, 286, 298, 319
Eam1104I	CTCTTC	2 cut(s)	49, 55
EarI	CTCTTC	2 cut(s)	49, 55
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	2 cut(s)	396, 425
FaiI	YATR	6 cut(s)	84, 394, 423, 461, 497, 499
FatI	CATG	2 cut(s)	392, 421
Fnu4HI	GCNGC	2 cut(s)	275, 312
Fsp4HI	GCNGC	2 cut(s)	275, 312
FspBI	CTAG	1 cut(s)	432
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	2 cut(s)	273, 391
GluI	GCNGC	2 cut(s)	275, 312
HapII	CCGG	2 cut(s)	260, 292
HhaI	GCGC	2 cut(s)	274, 392
Hin1II	CATG	2 cut(s)	396, 425
Hin6I	GCGC	2 cut(s)	272, 390
HinP1I	GCGC	2 cut(s)	272, 390
HinfI	GANTC	3 cut(s)	173, 179, 455
HpaII	CCGG	2 cut(s)	260, 292
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	178, 303
Hpy188III	TCNNGA	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	28, 32, 99, 327
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	396, 425
HspAI	GCGC	2 cut(s)	272, 390
Kzo9I	GATC	4 cut(s)	250, 286, 298, 319
LmnI	GCTCC	2 cut(s)	397, 444
LpnPI	CCDG	6 cut(s)	273, 305, 429, 450, 456, 465
Lsp1109I	GCAGC	2 cut(s)	286, 323
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	432
MalI	GATC	4 cut(s)	252, 288, 300, 321
MboI	GATC	4 cut(s)	250, 286, 298, 319
MboII	GAAGA	5 cut(s)	36, 42, 84, 87, 245
MluCI	AATT	2 cut(s)	118, 233
MlyI	GAGTC	2 cut(s)	173, 449
MmeI	TCCRAC	2 cut(s)	220, 429
MseI	TTAA	2 cut(s)	107, 377
MspI	CCGG	2 cut(s)	260, 292
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	390
NdeII	GATC	4 cut(s)	250, 286, 298, 319
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	2 cut(s)	396, 425
NsbI	TGCGCA	1 cut(s)	273
PasI	CCCWGGG	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	276, 313
PleI	GAGTC	2 cut(s)	173, 449
PpsI	GAGTC	2 cut(s)	173, 449
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	107, 377
SatI	GCNGC	2 cut(s)	275, 312
Sau3AI	GATC	4 cut(s)	250, 286, 298, 319
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	2 cut(s)	173, 449
ScrFI	CCNGG	1 cut(s)	444
SetI	ASST	5 cut(s)	31, 248, 279, 433, 441
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	118, 233
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	297, 342
TasI	AATT	2 cut(s)	118, 233
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	107, 377
Tru9I	TTAA	2 cut(s)	107, 377
TseI	GCWGC	2 cut(s)	274, 311
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.