AT5G37570

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011921
Physical Location & Seq
Reverse (-)
14923911 .. 14926333
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37570.1

Sequence Viewer

Length: 1653 bp
ATGATCCAGAGATTATCTCATCCTTCTTTGCTCTCACTCGAAACCCTCTTCAAGCTCTGCAAATCCGAGATTCATCTTAATCAAATCCATGCCCGAATCATCCGCAAAGGTCTTGAACAAGACCAGAATCTCATCTCAATCTTCATCTCTTCGTCTTCTTCGTCTTCTTCGTCTCTCTCTTACTCTTCCTCTGTTTTTGAACGTGTTCCTTCTCCTGGAACTTATCTCTGGAATCATTTGATTAAAGGGTACTCGAATAAGTTTCTCTTCTTTGAGACTGTTTCGATTCTAATGCGGATGATGAGAACAGGTTTAGCTAGACCTGATGAGTATACTTTTCCTTTGGTTATGAAAGTTTGTTCTAACAATGGACAGGTTCGTGTTGGTTCATCGGTTCATGGGTTAGTTTTGAGAATTGGGTTTGATAAAGATGTTGTTGTGGGTACAAGTTTTGTTGATTTTTATGGTAAATGTAAGGATTTGTTTAGTGCACGTAAGGTGTTTGGGGAAATGCCTGAGAGAAATGCTGTTTCTTGGACAGCTTTGGTTGTTGCCTATGTGAAATCTGGGGAGTTAGAGGAAGCGAAGAGCATGTTTGATCTTATGCCTGAGCGTAATTTGGGATCTTGGAATGCTTTGGTTGATGGGTTGGTTAAATCTGGTGATTTGGTTAATGCTAAGAAGTTGTTTGATGAAATGCCTAAGAGAGATATAATTTCGTATACCTCTATGATTGATGGGTATGCTAAAGGTGGTGATATGGTTTCTGCAAGGGATTTGTTTGAGGAAGCGAGGGGTGTTGATGTTAGAGCATGGTCAGCTTTGATATTGGGTTATGCACAGAACGGTCAGCCGAATGAGGCTTTTAAGGTTTTTAGCGAAATGTGTGCGAAGAATGTCAAACCTGATGAGTTTATAATGGTGGGTTTGATGTCAGCTTGTTCTCAGATGGGTTGTTTTGAGTTATGTGAAAAGGTTGATTCTTATCTGCACCAAAGGATGAATAAGTTTTCTAGTCATTATGTTGTACCTGCTTTGATAGACATGAATGCCAAGTGTGGCCACATGGACAGAGCAGCTAAGTTGTTTGAAGAGATGCCTCAGCGAGATCTTGTTTCATATTGTTCGATGATGGAAGGAATGGCGATCCACGGGTGTGGAAGTGAAGCTATTCGACTGTTTGAGAAAATGGTAGACGAAGGTATTGTTCCTGATGAAGTTGCCTTCACAGTAATATTGAAAGTTTGTGGCCAATCCAGGCTTGTTGAGGAGGGATTGAGGTATTTCGAGTTAATGCGAAAGAAATATTCTATTTTGGCATCTCCTGATCATTATTCATGCATTGTGAATCTTCTTAGCCGGACAGGGAAGCTTAAAGAGGCCTATGAGCTTATCAAATCCATGCCCTTTGAAGCTCATGCTAGTGCTTGGGGTTCACTTTTGGGTGGTTGTAGTCTACATGGGAATACTGAGATAGCAGAGGTAGTTGCAAGGCACCTCTTTGAGCTTGAACCACAAAGTGCCGGTAGTTACGTGCTTCTGTCAAATATTTATGCAGCTTTAGACCGGTGGACGGATGTTGCTCATCTTAGGGACAAAATGAACGAAAATGGTATTACAAAGATTTGTGGCCGAAGTTGGATAAGTCGATAA

Protein Analysis

550

Amino Acids

61.65

Weight (kDa)

6.71

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 177 - 206 7.9e-07 PPR repeat
PPR PF01535 209 - 238 1.4e-06 PPR repeat
PPR PF01535 239 - 263 8.9e-06 PPR repeat
PPR_2 PF13041 268 - 313 9.4e-10 PPR repeat family
PPR PF01535 271 - 299 1e-06 PPR repeat
PPR_2 PF13041 370 - 416 7.5e-09 PPR repeat family
E_motif PF20431 487 - 548 3e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37570 AT5G37570
fragaria_vesca FvH4_6g19660
malus_domestica MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis pycom02g20390 pycom07g06180
rosa_chinensis RchiOBHm_Chr3g0475001
rosa_laevigata RLG00000023872
rosa_multiflora Rmu_sc0003093.1_g000009
rosa_roxburghii Rroxscaffold_6G00406640
rosa_rugosa Rorug03G0146000
rosa_samantha Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana Rw3G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
Acc36I ACCTGC 1 cut(s) 1039
AccB1I GGYRCC 1 cut(s) 1494
AccI GTMKAC 4 cut(s) 332, 722, 1194, 1456
AciI CCGC 2 cut(s) 103, 295
AclWI GGATC 2 cut(s) 631, 1141
AcoI YGGCCR 3 cut(s) 1060, 1249, 1630
AdeI CACNNNGTG 1 cut(s) 1520
AfaI GTAC 3 cut(s) 251, 445, 1029
AfiI CCNNNNNNNGG 2 cut(s) 215, 1573
AflIII ACRYGT 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 1566
AgsI TTSAA 7 cut(s) 52, 116, 200, 1091, 1240, 1412, 1511
AjnI CCWGG 2 cut(s) 214, 1256
AleI CACNNNNGTG 1 cut(s) 1155
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 2 cut(s) 177, 269
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 2 cut(s) 631, 1141
AoxI GGCC 4 cut(s) 1060, 1249, 1380, 1630
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 2 cut(s) 1076, 1556
AsiGI ACCGGT 1 cut(s) 1566
Asp700I GAANNNNTTC 2 cut(s) 204, 1170
AsuHPI GGTGA 2 cut(s) 674, 767
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 2 cut(s) 1062, 1251
BanI GGYRCC 1 cut(s) 1494
BbsI GAAGAC 2 cut(s) 147, 156
Bbv12I GWGCWC 1 cut(s) 493
BbvCI CCTCAGC 1 cut(s) 1101
BbvI GCAGC 2 cut(s) 1088, 1568
BccI CCATC 4 cut(s) 638, 731, 943, 1126
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 869, 903
BciT130I CCWGG 2 cut(s) 216, 1258
BclI TGATCA 1 cut(s) 1327
BcoDI GTCTC 2 cut(s) 177, 269
BfaI CTAG 3 cut(s) 318, 1014, 1422
BfuAI ACCTGC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 2 cut(s) 1077, 1557
BlsI GCNGC 2 cut(s) 1078, 1558
Bme1390I CCNGG 2 cut(s) 216, 1258
BmiI GGNNCC 1 cut(s) 1496
BmrFI CCNGG 2 cut(s) 216, 1258
BmsI GCATC 2 cut(s) 1086, 1328
BpiI GAAGAC 2 cut(s) 147, 156
BplI GAGNNNNNCTC 1 cut(s) 33
Bpu10I CCTNAGC 2 cut(s) 609, 1101
BsaAI YACGTR 2 cut(s) 494, 1534
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 1 cut(s) 1150
BsaWI WCCGGW 1 cut(s) 1566
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 1573
Bse118I RCCGGY 2 cut(s) 1523, 1566
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 2 cut(s) 216, 1258
BseDI CCNNGG 1 cut(s) 1150
BseGI GGATG 5 cut(s) 19, 99, 303, 1005, 1582
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 2 cut(s) 215, 1573
BseMII CTCAG 5 cut(s) 507, 600, 959, 1115, 1461
BseRI GAGGAG 1 cut(s) 1283
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 2 cut(s) 1088, 1568
BsgI GTGCAG 1 cut(s) 974
BshFI GGCC 4 cut(s) 1062, 1251, 1382, 1632
BshNI GGYRCC 1 cut(s) 1494
BshTI ACCGGT 1 cut(s) 1566
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 3 cut(s) 1360, 1524, 1567
BslFI GGGAC 1 cut(s) 1607
BslI CCNNNNNNNGG 2 cut(s) 215, 1573
BsmAI GTCTC 2 cut(s) 177, 269
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 1607
BsmI GAATGC 2 cut(s) 637, 1054
BsnI GGCC 4 cut(s) 1062, 1251, 1382, 1632
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
BspACI CCGC 2 cut(s) 103, 295
BspANI GGCC 4 cut(s) 1062, 1251, 1382, 1632
BspCNI CTCAG 5 cut(s) 508, 601, 958, 1114, 1462
BspLI GGNNCC 1 cut(s) 1496
BspMI ACCTGC 1 cut(s) 1039
BspPI GGATC 2 cut(s) 631, 1141
BspQI GCTCTTC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 1494
BsrFI RCCGGY 2 cut(s) 1523, 1566
BssAI RCCGGY 2 cut(s) 1523, 1566
BssECI CCNNGG 1 cut(s) 1150
BssMI GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
BssNAI GTATAC 2 cut(s) 333, 723
Bst1107I GTATAC 2 cut(s) 333, 723
Bst2UI CCWGG 2 cut(s) 216, 1258
Bst4CI ACNGT 4 cut(s) 280, 848, 1179, 1231
Bst6I CTCTTC 6 cut(s) 53, 154, 190, 272, 581, 1086
BstBAI YACGTR 2 cut(s) 494, 1534
BstDSI CCRYGG 1 cut(s) 1150
BstF5I GGATG 5 cut(s) 19, 99, 303, 1005, 1582
BstKTI GATC 6 cut(s) 6, 601, 626, 1111, 1149, 1330
BstMAI GTCTC 2 cut(s) 177, 269
BstMBI GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
BstMWI GCNNNNNNNGC 1 cut(s) 818
BstNI CCWGG 2 cut(s) 216, 1258
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 214, 1256
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 1088, 1568
BstV2I GAAGAC 2 cut(s) 147, 156
BstX2I RGATCY 2 cut(s) 623, 1108
BstXI CCANNNNNNTGG 1 cut(s) 1157
BstYI RGATCY 2 cut(s) 623, 1108
BstZ17I GTATAC 2 cut(s) 333, 723
BsuRI GGCC 4 cut(s) 1062, 1251, 1382, 1632
BtgI CCRYGG 1 cut(s) 1150
BtsCI GGATG 5 cut(s) 19, 99, 303, 1005, 1582
BveI ACCTGC 1 cut(s) 1039
Cfr10I RCCGGY 2 cut(s) 1523, 1566
Csp6I GTAC 3 cut(s) 250, 444, 1028
CspAI ACCGGT 1 cut(s) 1566
CviQI GTAC 3 cut(s) 250, 444, 1028
DpnI GATC 6 cut(s) 5, 600, 625, 1110, 1148, 1329
DpnII GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
DraIII CACNNNGTG 1 cut(s) 1520
EaeI YGGCCR 3 cut(s) 1060, 1249, 1630
Eam1104I CTCTTC 6 cut(s) 53, 154, 190, 272, 581, 1086
EarI CTCTTC 6 cut(s) 53, 154, 190, 272, 581, 1086
Eco147I AGGCCT 1 cut(s) 1382
EcoRII CCWGG 2 cut(s) 214, 1256
EcoT22I ATGCAT 1 cut(s) 1343
Esp3I CGTCTC 1 cut(s) 177
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 1607
FbaI TGATCA 1 cut(s) 1327
FblI GTMKAC 4 cut(s) 332, 722, 1194, 1456
Fnu4HI GCNGC 2 cut(s) 1077, 1557
FokI GGATG 5 cut(s) 6, 86, 310, 1012, 1589
Fsp4HI GCNGC 2 cut(s) 1077, 1557
FspBI CTAG 3 cut(s) 318, 1014, 1422
GluI GCNGC 2 cut(s) 1077, 1557
HaeIII GGCC 4 cut(s) 1062, 1251, 1382, 1632
HapII CCGG 3 cut(s) 1360, 1524, 1567
HindIII AAGCTT 1 cut(s) 1370
HinfI GANTC 7 cut(s) 70, 96, 127, 232, 286, 980, 1348
HpaII CCGG 3 cut(s) 1360, 1524, 1567
HphI GGTGA 2 cut(s) 674, 767
Hpy166II GTNNAC 7 cut(s) 333, 491, 723, 1195, 1436, 1457, 1572
Hpy188I TCNGA 2 cut(s) 67, 948
Hpy188III TCNNGA 5 cut(s) 7, 113, 229, 1211, 1325
Hpy8I GTNNAC 7 cut(s) 333, 491, 723, 1195, 1436, 1457, 1572
HpyAV CCTTC 5 cut(s) 33, 219, 1130, 1193, 1234
HpyCH4III ACNGT 4 cut(s) 280, 848, 1179, 1231
HpyCH4IV ACGT 3 cut(s) 202, 493, 1533
HpyCH4V TGCA 8 cut(s) 60, 491, 770, 839, 991, 1341, 1490, 1556
HpyF10VI GCNNNNNNNGC 1 cut(s) 818
HpySE526I ACGT 3 cut(s) 202, 493, 1533
Ksp22I TGATCA 1 cut(s) 1327
Kzo9I GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
LguI GCTCTTC 1 cut(s) 581
Lsp1109I GCAGC 2 cut(s) 1088, 1568
LweI GCATC 2 cut(s) 1086, 1328
MaeI CTAG 3 cut(s) 318, 1014, 1422
MaeII ACGT 3 cut(s) 202, 493, 1533
MaeIII GTNAC 1 cut(s) 1529
MalI GATC 6 cut(s) 5, 600, 625, 1110, 1148, 1329
MboI GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
MflI RGATCY 2 cut(s) 623, 1108
MhlI GDGCHC 1 cut(s) 493
MlsI TGGCCA 2 cut(s) 1062, 1251
MluCI AATT 3 cut(s) 414, 616, 714
MluNI TGGCCA 2 cut(s) 1062, 1251
MmeI TCCRAC 1 cut(s) 1619
Mox20I TGGCCA 2 cut(s) 1062, 1251
Mph1103I ATGCAT 1 cut(s) 1343
MroXI GAANNNNTTC 2 cut(s) 204, 1170
MscI TGGCCA 2 cut(s) 1062, 1251
MseI TTAA 7 cut(s) 78, 243, 654, 672, 867, 1292, 1374
MslI CAYNNNNRTG 2 cut(s) 1155, 1422
Msp20I TGGCCA 2 cut(s) 1062, 1251
MspI CCGG 3 cut(s) 1360, 1524, 1567
MspR9I CCNGG 2 cut(s) 216, 1258
Mva1269I GAATGC 2 cut(s) 637, 1054
MvaI CCWGG 2 cut(s) 216, 1258
MwoI GCNNNNNNNGC 1 cut(s) 818
NdeII GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
NlaIV GGNNCC 1 cut(s) 1496
NsiI ATGCAT 1 cut(s) 1343
NspI RCATGY 1 cut(s) 595
OliI CACNNNNGTG 1 cut(s) 1155
PceI AGGCCT 1 cut(s) 1382
PciSI GCTCTTC 1 cut(s) 581
PcsI WCGNNNNNNNCGW 2 cut(s) 158, 167
PctI GAATGC 2 cut(s) 637, 1054
PdmI GAANNNNTTC 2 cut(s) 204, 1170
PfeI GAWTC 7 cut(s) 70, 96, 127, 232, 286, 980, 1348
PfoI TCCNGGA 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 1566
PkrI GCNGC 2 cut(s) 1078, 1558
Ppu21I YACGTR 2 cut(s) 494, 1534
PsiI TTATAA 1 cut(s) 917
Psp6I CCWGG 2 cut(s) 214, 1256
PspGI CCWGG 2 cut(s) 214, 1256
PspN4I GGNNCC 1 cut(s) 1496
PsuI RGATCY 2 cut(s) 623, 1108
RsaI GTAC 3 cut(s) 251, 445, 1029
RsaNI GTAC 3 cut(s) 250, 444, 1028
RseI CAYNNNNRTG 2 cut(s) 1155, 1422
SapI GCTCTTC 1 cut(s) 581
SaqAI TTAA 7 cut(s) 78, 243, 654, 672, 867, 1292, 1374
SatI GCNGC 2 cut(s) 1077, 1557
Sau3AI GATC 6 cut(s) 3, 598, 623, 1108, 1146, 1327
ScrFI CCNGG 2 cut(s) 216, 1258
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 2 cut(s) 1086, 1328
SmiMI CAYNNNNRTG 2 cut(s) 1155, 1422
Sse9I AATT 3 cut(s) 414, 616, 714
SseBI AGGCCT 1 cut(s) 1382
SsiI CCGC 2 cut(s) 103, 295
SspI AATATT 3 cut(s) 1236, 1307, 1549
SspMI CTAG 3 cut(s) 318, 1014, 1422
StuI AGGCCT 1 cut(s) 1382
StyD4I CCNGG 2 cut(s) 214, 1256
TaaI ACNGT 4 cut(s) 280, 848, 1179, 1231
TaiI ACGT 3 cut(s) 205, 496, 1536
TaqI TCGA 7 cut(s) 39, 254, 284, 1127, 1174, 1287, 1648
TasI AATT 3 cut(s) 414, 616, 714
TfiI GAWTC 7 cut(s) 70, 96, 127, 232, 286, 980, 1348
Tru1I TTAA 7 cut(s) 78, 243, 654, 672, 867, 1292, 1374
Tru9I TTAA 7 cut(s) 78, 243, 654, 672, 867, 1292, 1374
TseI GCWGC 2 cut(s) 1076, 1556
TspGWI ACGGA 1 cut(s) 1589
VneI GTGCAC 1 cut(s) 489
XceI RCATGY 1 cut(s) 595
XmiI GTMKAC 4 cut(s) 332, 722, 1194, 1456
XmnI GAANNNNTTC 2 cut(s) 204, 1170
XspI CTAG 3 cut(s) 318, 1014, 1422
Zsp2I ATGCAT 1 cut(s) 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.