Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Forward (+)

20601725 .. 20603648

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCCTAGTGTGCGCGTAGCTTCAGCCTCAATCGCCACATTACTCAAAGCCTGCAAAACCCAGTTCCGTCTTGAACAAATCCACGCCCAGATCATCCACAAGGGTCTAGAGCAAGACCACTTCCTCATCACCCAATTCATCTGCCTCTCCAACGCTCTCTCCTCCCTCCCTTACTCCACCGCCGTCTTCCGCCGCGTCAACAACCCCAGCAGCCATCTCTGGAACTCACTACTCAAAGGCCACTGCGAAAGATCCAGTTTTTCCGCCACCGTCTCTCTCTTCATTCGCATGAAGAGGGAGGATGGCGCGGCGGATGAGTACACGTACCCGTCGGTTGTGAAGGCCTGTGCCGGCGAGGGAAGGGTCCGGGAGGGAAGGGCGGTTCATGGGTCGGCGGTGAGGTGTGGGGTTGATGGGAATGTGTTTGTGGGGACTAGCTTGGTTGACTTGTATGGCAAATGTAGGGAGGTTGTGTGTGCACGGAAGGTGTTTGATGGAATGTGTGAGAGAAATGTGGTGTCTTGGACTGCTATGGTTGTTGGGTATGCCGGTGTTGGGGATATGGTGGGGGCGAGTAAGGTGTTCGGTGAAATGCCGGAGAGGAATGCTGTGTCGTGGAATGTGGTTATTAGTGGGTTTGTTAGGTTGGGTGATTTGGGGAATGCGAGGAGGGTGTTTGAGGAGATGCCGGGGAAAGATGTGGTTTCTTTTACTACTATGATTGATGGATATGCAAAGTCCGGGGATATGGCTTCGGCCAGGTTTTTGTTTGAGCAGGCTCCCGTTAAGGATATTGTTATGTGGTCGGCGTTGATATCGGGGTATGCTCAAAATGGTTTTCCCAATCAGGCTGTGAAAATATTTCTTGAGATGAGTAGTAGGAATGTGGAACCTGATGAGTTTATAATGTTGGACTCCCAGTTTATTGGTGCTCCAGGAACCAAACTGCAGGCACTGCCTTATACGCCACTCTTAGAGATGCATTTCTCACATGTCAAAGGATGGGTGAAGACAATCTGGTTGCAAATATCTTGTTACCTGAAATTAGAGAATGGCGACTTGAATGGTTCTCACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

359

Amino Acids

39.53

Weight (kDa)

8.32

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 117	2.7e-07	PPR repeat family
PPR	PF01535	204 - 233	2.7e-06	PPR repeat
PPR_2	PF13041	263 - 301	1.8e-08	PPR repeat family
PPR	PF01535	266 - 296	2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	905
AccII	CGCG	3 cut(s)	15, 195, 308
AciI	CCGC	8 cut(s)	180, 190, 193, 264, 308, 311, 380, 395
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	756
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	2 cut(s)	320, 326
AfiI	CCNNNNNNNGG	1 cut(s)	555
AflIII	ACRYGT	2 cut(s)	321, 991
AgsI	TTSAA	2 cut(s)	74, 1063
AjnI	CCWGG	2 cut(s)	758, 934
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	2 cut(s)	20, 438
AluI	AGCT	2 cut(s)	20, 438
Alw21I	GWGCWC	2 cut(s)	481, 934
Alw26I	GTCTC	1 cut(s)	277
Alw44I	GTGCAC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	955
AoxI	GGCC	3 cut(s)	238, 342, 756
ApaLI	GTGCAC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	15, 308
AspS9I	GGNCC	1 cut(s)	364
AsuC2I	CCSGG	3 cut(s)	368, 690, 742
AsuHPI	GGTGA	5 cut(s)	121, 409, 599, 662, 1018
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	481
BbsI	GAAGAC	2 cut(s)	178, 1016
Bbv12I	GWGCWC	2 cut(s)	481, 934
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	6 cut(s)	222, 296, 407, 488, 719, 996
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	760, 936
BcnI	CCSGG	3 cut(s)	368, 690, 742
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	3 cut(s)	6, 107, 435
BfmI	CTRYAG	1 cut(s)	947
BisI	GCNGC	3 cut(s)	193, 211, 309
BlsI	GCNGC	3 cut(s)	194, 212, 310
Bme1390I	CCNGG	5 cut(s)	368, 690, 742, 760, 936
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	4 cut(s)	365, 780, 891, 940
BmrFI	CCNGG	5 cut(s)	368, 690, 742, 760, 936
BmrI	ACTGGG	2 cut(s)	55, 913
BmsI	GCATC	2 cut(s)	675, 969
BmuI	ACTGGG	2 cut(s)	55, 913
BpiI	GAAGAC	2 cut(s)	178, 1016
BpmI	CTGGAG	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	3 cut(s)	368, 690, 742
BsaAI	YACGTR	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	689, 741
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse118I	RCCGGY	2 cut(s)	350, 548
Bse1I	ACTGG	3 cut(s)	61, 255, 919
BseBI	CCWGG	2 cut(s)	760, 936
BseDI	CCNNGG	2 cut(s)	689, 741
BseGI	GGATG	4 cut(s)	93, 307, 319, 1007
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseNI	ACTGG	3 cut(s)	61, 255, 919
BseRI	GAGGAG	3 cut(s)	151, 682, 695
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	3 cut(s)	15, 195, 308
BshFI	GGCC	3 cut(s)	240, 344, 758
BsiHKAI	GWGCWC	2 cut(s)	481, 934
BsiSI	CCGG	6 cut(s)	351, 367, 549, 596, 689, 741
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	2 cut(s)	610, 667
BsnI	GGCC	3 cut(s)	240, 344, 758
Bsp1286I	GDGCHC	2 cut(s)	481, 934
Bsp143I	GATC	2 cut(s)	90, 251
BspACI	CCGC	8 cut(s)	180, 190, 193, 264, 308, 311, 380, 395
BspANI	GGCC	3 cut(s)	240, 344, 758
BspFNI	CGCG	3 cut(s)	15, 195, 308
BspLI	GGNNCC	4 cut(s)	365, 780, 891, 940
BspMAI	CTGCAG	1 cut(s)	951
BspPI	GGATC	1 cut(s)	246
BsrFI	RCCGGY	2 cut(s)	350, 548
BsrI	ACTGG	3 cut(s)	61, 255, 919
BssAI	RCCGGY	2 cut(s)	350, 548
BssECI	CCNNGG	2 cut(s)	689, 741
BssMI	GATC	2 cut(s)	90, 251
Bst2UI	CCWGG	2 cut(s)	760, 936
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	284, 287
BstAPI	GCANNNNNTGC	1 cut(s)	955
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	52, 352, 777, 951
BstDEI	CTNAG	1 cut(s)	973
BstF5I	GGATG	4 cut(s)	93, 307, 319, 1007
BstFNI	CGCG	3 cut(s)	15, 195, 308
BstHHI	GCGC	2 cut(s)	15, 308
BstKTI	GATC	2 cut(s)	93, 254
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	90, 251
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 32, 955, 964
BstNI	CCWGG	2 cut(s)	760, 936
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	5 cut(s)	366, 688, 740, 758, 934
BstSFI	CTRYAG	1 cut(s)	947
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	3 cut(s)	15, 195, 308
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	2 cut(s)	178, 1016
BstX2I	RGATCY	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	240, 344, 758
BtsCI	GGATG	4 cut(s)	93, 307, 319, 1007
BtsI	GCAGTG	2 cut(s)	241, 953
BtsIMutI	CAGTG	2 cut(s)	241, 953
Cac8I	GCNNGC	4 cut(s)	52, 352, 777, 951
CaiI	CAGNNNCTG	1 cut(s)	955
CfoI	GCGC	2 cut(s)	15, 308
Cfr10I	RCCGGY	2 cut(s)	350, 548
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	319, 325
CviAII	CATG	3 cut(s)	289, 386, 992
CviQI	GTAC	2 cut(s)	319, 325
DdeI	CTNAG	1 cut(s)	973
DpnI	GATC	2 cut(s)	92, 253
DpnII	GATC	2 cut(s)	90, 251
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	2 cut(s)	284, 287
EarI	CTCTTC	2 cut(s)	284, 287
EciI	GGCGGA	3 cut(s)	179, 253, 326
Eco147I	AGGCCT	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	758, 934
EcoRV	GATATC	1 cut(s)	816
EcoT22I	ATGCAT	1 cut(s)	984
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	3 cut(s)	292, 389, 995
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	288, 385, 991
Fnu4HI	GCNGC	3 cut(s)	193, 211, 309
FokI	GGATG	4 cut(s)	80, 314, 326, 1014
Fsp4HI	GCNGC	3 cut(s)	193, 211, 309
FspBI	CTAG	3 cut(s)	6, 107, 435
GlaI	GCGC	2 cut(s)	14, 307
GluI	GCNGC	3 cut(s)	193, 211, 309
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	918
HaeIII	GGCC	3 cut(s)	240, 344, 758
HapII	CCGG	6 cut(s)	351, 367, 549, 596, 689, 741
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	15, 308
Hin1II	CATG	3 cut(s)	292, 389, 995
Hin6I	GCGC	2 cut(s)	13, 306
HinP1I	GCGC	2 cut(s)	13, 306
HincII	GTYRAC	2 cut(s)	199, 445
HindII	GTYRAC	2 cut(s)	199, 445
HinfI	GANTC	1 cut(s)	914
HpaII	CCGG	6 cut(s)	351, 367, 549, 596, 689, 741
HphI	GGTGA	5 cut(s)	121, 409, 599, 662, 1018
Hpy166II	GTNNAC	4 cut(s)	199, 321, 445, 479
Hpy188III	TCNNGA	5 cut(s)	71, 107, 220, 866, 1077
Hpy8I	GTNNAC	4 cut(s)	199, 321, 445, 479
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	4 cut(s)	334, 354, 369, 478
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	6 cut(s)	54, 479, 734, 949, 982, 1024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 32, 955, 964
HpyF3I	CTNAG	1 cut(s)	973
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	292, 389, 995
HspAI	GCGC	2 cut(s)	13, 306
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	90, 251
LmnI	GCTCC	2 cut(s)	784, 937
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	2 cut(s)	675, 969
MaeI	CTAG	3 cut(s)	6, 107, 435
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	1034
MalI	GATC	2 cut(s)	92, 253
MboI	GATC	2 cut(s)	90, 251
MboII	GAAGA	4 cut(s)	178, 271, 304, 1021
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	481, 934
MluCI	AATT	2 cut(s)	134, 1043
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	2 cut(s)	174, 891
Mph1103I	ATGCAT	1 cut(s)	984
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	1 cut(s)	786
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	6 cut(s)	351, 367, 549, 596, 689, 741
MspR9I	CCNGG	5 cut(s)	368, 690, 742, 760, 936
Mva1269I	GAATGC	2 cut(s)	610, 667
MvaI	CCWGG	2 cut(s)	760, 936
MvnI	CGCG	3 cut(s)	15, 195, 308
MwoI	GCNNNNNNNGC	4 cut(s)	10, 32, 955, 964
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	3 cut(s)	368, 690, 742
NdeII	GATC	2 cut(s)	90, 251
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	292, 389, 995
NlaIV	GGNNCC	4 cut(s)	365, 780, 891, 940
NsiI	ATGCAT	1 cut(s)	984
NspI	RCATGY	1 cut(s)	995
PceI	AGGCCT	1 cut(s)	344
PciI	ACATGT	1 cut(s)	991
PctI	GAATGC	2 cut(s)	610, 667
PdiI	GCCGGC	1 cut(s)	352
PfoI	TCCNGGA	2 cut(s)	366, 934
PkrI	GCNGC	3 cut(s)	194, 212, 310
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
Ppu21I	YACGTR	1 cut(s)	324
PscI	ACATGT	1 cut(s)	991
PsiI	TTATAA	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	758, 934
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	758, 934
PspN4I	GGNNCC	4 cut(s)	365, 780, 891, 940
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	951
PstNI	CAGNNNCTG	1 cut(s)	955
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	2 cut(s)	320, 326
RsaNI	GTAC	2 cut(s)	319, 325
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	786
SatI	GCNGC	3 cut(s)	193, 211, 309
Sau3AI	GATC	2 cut(s)	90, 251
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	5 cut(s)	368, 690, 742, 760, 936
SduI	GDGCHC	2 cut(s)	481, 934
SfaNI	GCATC	2 cut(s)	675, 969
SfcI	CTRYAG	1 cut(s)	947
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
Sse9I	AATT	2 cut(s)	134, 1043
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	8 cut(s)	180, 190, 193, 264, 308, 311, 380, 395
SspI	AATATT	1 cut(s)	861
SspMI	CTAG	3 cut(s)	6, 107, 435
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	5 cut(s)	366, 688, 740, 758, 934
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	326
TasI	AATT	2 cut(s)	134, 1043
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	195, 311
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TscAI	CASTG	2 cut(s)	248, 960
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	4 cut(s)	127, 271, 305, 374
TspGWI	ACGGA	2 cut(s)	56, 496
TspRI	CASTG	2 cut(s)	248, 960
VneI	GTGCAC	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	364
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	1 cut(s)	995
XspI	CTAG	3 cut(s)	6, 107, 435
Zsp2I	ATGCAT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.