Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Reverse (-)

7482130 .. 7486131

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1078100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGCCTACAATCCCCCTCTACTCATCGCTAGCTCCGCCCAACAGCCGCCGTCCCACTTCTCTGCTGCCTTCAATTGCAACCTTACTCAAAGGCTGCAAAACCCAATTCCGTCTCGAACAAATCCACGCCCACATTGTCCGTAAAGGTTTGGAGCAAGATTGCTTCCTCATAAGCCAGTTCATCTGCCTCTCCAACGCTCTCGCTTCCCTCTCTTACTCCACCGCCGTACTCGACCGCGTCCTCAGCCCCAACACCTTTCTCTGGAACTGTCTGATCAAAGGATACTGCGAAAGGTCTGGTTTTTTGGGCACTGTTTCTCTGTTTGTTAGGATGAAGAGGGAGGAGGGCCTTCTGGATAGGTTTACGTACCCGTCTCTCTTTAAGGCGTGTGCTAGTGAGGGGAGGGTCTGGGAAGGAAGGGCGATACATGGGTTGGCGGTGAGGTGTGGAGTTGACGGGGATGTGTTTGTAGGCACCAGTTTGATCGATTTGTACGGGAAATGCAGGGAGATTGTTTGCGCTCGCAAGGTGTTTGATGGAATGTCTGAGAGAAGTGTGGTTTCTTGGACGACTATGGTTGTTGGGTATGCTAGTGTTGGGGATTTGGTGGAGGCCAACAAGCTGTTTGATCAGATGCCCCAGAGAAATGCAGTGTCGTGGAATGCGATTATTAGTGGGTTTGTAAAGATGGGGGATTTGGTCAATGCCAGAAGGATCTTTGATCAAATGCCTGAGAAAAATGTGGTTTCTTATACTACTATGATCGATGGATATGCCAAGTGTGGAGATATGGCGTCTGCGAGATTTTTGTTTGATCAATGCTCAGCTAAAGATGTCGTTGCATGGTCGGCATTGATATCAGGGTATGCTCAAAATGGTCAACCTAACGAGGCTGTAAAGATATTTCAAGAAATGAGTGCGAAGAATGTTAAGCCTGACGAGTTTATAATGGTGAGCTTGATGTCAGCTTGTTCCCAAGTGGGTTGCTTGCAGGTGGCTAAATGGGTTGATTCTTACCTGAGCCAGAGCTCCATTGATGTTCGTCAGGCTCATGTTCTCGCAGCTCTGATTAACATGAATGCAATGTGTGGGAATATGGAAAGAGCAACACGTTTGTTTGAAGAGATGCCTAAGCGGGATTTGATTTCGTATTGTTCTATGGTACAAGGGTTGTCGATTAATGGTCAAGGGGATCAGGCTATTTCCCTCTTCAATAAGATGTTAATTGAAGGTTTAGCTCCGGATGAGGTTGCTTTTACAGTCATCCTGACAGTTTGTAGTCGCTCTGGACTCGTTGAGGAGGGTTGGCACTTCTTTGAATCAATGAGACATAAGTACCATTTAAATCCCTCTCCTGATCATTATGCATGTATGGTTAGTCTTCTTAGCCGGTCAGGACGGTTAAAAGCAGCTTATGATCTTCTAAAATCAATGCATGAGGAGCCTCATGCTGGCGCTTGGGGTGCACTACTAGCAGCCTGTAAGCTAAACTGCAATGCTGAGCTAGGAGAGTTAGTTGCTTATCGACTTTTTGAGCTTGAACCCCAAAATTCTGGTAATTATGTGCTCTTGTCCGATATCTATGCAGCAACAGGCCGCTGGCTTGATGTTTCTGCTGTGCTTAAGGAACCAGGCTGCCAAGGCTGCCTTCTACAGTACTCCTTATCGCAAGGTTCAAGTGAGATTGCGTCCCGAGGGGATGGTAGAGACAGAGACATAAACGTTTTTGTTCAAAGGAGTTTATTAAGACAATCTTCTTCCCTTGAGAGCTTAATCCGGGATCAACCATCAGCCAAGCAACCTGAAGCTTATGAGTGGTGTATCAAATTATCTCTAAGCAAGTTCCCTGGTGGTAACTTCCTTGCTAAGTATTTGCAGGGGACCTGTGCTTTACTGCTTCAACTAATGTGTATGTTATCCTCTATTGATGTGTGGCAAGGAACTCAATTGCTAGCTATTGACATTGGTGCCGCTATGGGGTTGCTTAGAAGGGTCTTTCATGGAGATGAACTGACAGAAAAAGAAAAGAAAGGTCTACAGAGAGCTCTGACTGACATAGTATCAGTTGTTCCTATTGGTGTTTCAACGCTTCTTCCTGATTCTCATCTTAGTTCTTCATCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

709

Amino Acids

78.06

Weight (kDa)

6.85

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 131	7.6e-08	PPR repeat family
PPR_2	PF13041	216 - 248	5.5e-06	PPR repeat family
PPR	PF01535	218 - 248	2.3e-06	PPR repeat
PPR_2	PF13041	277 - 324	1.6e-11	PPR repeat family
PPR	PF01535	280 - 309	3.1e-08	PPR repeat
PPR_2	PF13041	380 - 427	3.7e-08	PPR repeat family
E_motif	PF20431	499 - 541	2e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	947
AarI	CACCTGC	1 cut(s)	982
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	2 cut(s)	473, 1967
AccI	GTMKAC	1 cut(s)	2035
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	1240
AciI	CCGC	8 cut(s)	35, 46, 222, 235, 437, 1135, 1597, 1971
AclI	AACGTT	1 cut(s)	1722
AclWI	GGATC	3 cut(s)	722, 1200, 1788
AcsI	RAATTY	1 cut(s)	1549
AcuI	CTGAAG	1 cut(s)	1824
AcyI	GRCGYC	1 cut(s)	794
AfaI	GTAC	6 cut(s)	228, 368, 494, 1164, 1337, 1658
AfiI	CCNNNNNNNGG	3 cut(s)	261, 1451, 1977
AflII	CTTAAG	1 cut(s)	1622
AflIII	ACRYGT	1 cut(s)	1109
AjnI	CCWGG	2 cut(s)	1630, 1846
AjuI	GAANNNNNNNTTGG	2 cut(s)	1632, 1664
Alw21I	GWGCWC	4 cut(s)	1031, 1468, 1569, 2047
Alw26I	GTCTC	5 cut(s)	116, 378, 1321, 1701, 1707
Alw44I	GTGCAC	1 cut(s)	1464
AlwI	GGATC	3 cut(s)	722, 1200, 1788
Ama87I	CYCGRG	1 cut(s)	1692
Aor13HI	TCCGGA	1 cut(s)	1240
AoxI	GGCC	3 cut(s)	346, 612, 1594
ApaLI	GTGCAC	1 cut(s)	1464
ApeKI	GCWGC	8 cut(s)	64, 93, 1061, 1409, 1475, 1586, 1635, 1644
ApoI	RAATTY	1 cut(s)	1549
AseI	ATTAAT	1 cut(s)	1179
AspLEI	GCGC	2 cut(s)	521, 1457
AspS9I	GGNCC	2 cut(s)	346, 1881
AsuC2I	CCSGG	1 cut(s)	1778
AsuHPI	GGTGA	2 cut(s)	451, 964
AsuNHI	GCTAGC	2 cut(s)	28, 1951
AvaI	CYCGRG	1 cut(s)	1692
AvaII	GGWCC	1 cut(s)	1881
BaeGI	GKGCMC	2 cut(s)	311, 1468
BaeI	ACNNNNGTAYC	6 cut(s)	416, 449, 1154, 1187, 1319, 1352
BanI	GGYRCC	2 cut(s)	473, 1967
BanII	GRGCYC	2 cut(s)	1031, 2047
BbsI	GAAGAC	1 cut(s)	1373
Bbv12I	GWGCWC	4 cut(s)	1031, 1468, 1569, 2047
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	8 cut(s)	51, 80, 1073, 1421, 1487, 1598, 1622, 1631
BccI	CCATC	5 cut(s)	530, 682, 761, 1694, 1795
BceAI	ACGGC	2 cut(s)	33, 209
BcgI	CGANNNNNNTGC	4 cut(s)	755, 789, 1565, 1599
BciT130I	CCWGG	2 cut(s)	1632, 1848
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	5 cut(s)	273, 628, 721, 814, 1357
BcnI	CCSGG	1 cut(s)	1778
BcoDI	GTCTC	5 cut(s)	116, 378, 1321, 1701, 1707
BfaI	CTAG	6 cut(s)	29, 393, 591, 1472, 1505, 1952
BfmI	CTRYAG	2 cut(s)	1652, 2036
BfoI	RGCGCY	1 cut(s)	1458
BfrI	CTTAAG	1 cut(s)	1622
BfuAI	ACCTGC	1 cut(s)	982
BfuI	GTATCC	1 cut(s)	275
BlpI	GCTNAGC	2 cut(s)	823, 1500
BmcAI	AGTACT	1 cut(s)	1658
Bme1390I	CCNGG	3 cut(s)	1632, 1778, 1848
Bme18I	GGWCC	1 cut(s)	1881
BmeT110I	CYCGRG	1 cut(s)	1692
BmgT120I	GGNCC	2 cut(s)	346, 1881
BmiI	GGNNCC	5 cut(s)	475, 1443, 1629, 1882, 1969
BmrFI	CCNGG	3 cut(s)	1632, 1778, 1848
BmsI	GCATC	2 cut(s)	624, 1116
BmtI	GCTAGC	2 cut(s)	32, 1955
BpiI	GAAGAC	1 cut(s)	1373
Bpu10I	CCTNAGC	3 cut(s)	242, 1019, 1131
Bpu1102I	GCTNAGC	2 cut(s)	823, 1500
BpuEI	CTTGAG	1 cut(s)	1784
BpuMI	CCSGG	1 cut(s)	1778
Bsa29I	ATCGAT	2 cut(s)	486, 765
BsaAI	YACGTR	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	2103
BsaHI	GRCGYC	1 cut(s)	794
BsaJI	CCNNGG	3 cut(s)	1639, 1693, 1846
BsaWI	WCCGGW	1 cut(s)	1240
BsaXI	ACNNNNNCTCC	2 cut(s)	1500, 1530
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 1451, 1977
Bse118I	RCCGGY	1 cut(s)	1389
Bse1I	ACTGG	2 cut(s)	175, 477
Bse3DI	GCAATG	2 cut(s)	1089, 1501
Bse8I	GATNNNNATC	1 cut(s)	2103
BseAI	TCCGGA	1 cut(s)	1240
BseBI	CCWGG	2 cut(s)	1632, 1848
BseCI	ATCGAT	2 cut(s)	486, 765
BseDI	CCNNGG	3 cut(s)	1639, 1693, 1846
BseGI	GGATG	5 cut(s)	336, 466, 1249, 1263, 1705
BseJI	GATNNNNATC	1 cut(s)	2103
BseLI	CCNNNNNNNGG	3 cut(s)	261, 1451, 1977
BseMI	GCAATG	2 cut(s)	1089, 1501
BseMII	CTCAG	6 cut(s)	256, 537, 723, 837, 1010, 1491
BseNI	ACTGG	2 cut(s)	175, 477
BseRI	GAGGAG	3 cut(s)	356, 1313, 1454
BseSI	GKGCMC	2 cut(s)	311, 1468
BseXI	GCAGC	8 cut(s)	51, 80, 1073, 1421, 1487, 1598, 1622, 1631
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	348, 614, 1596
BshNI	GGYRCC	2 cut(s)	473, 1967
BshVI	ATCGAT	2 cut(s)	486, 765
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	4 cut(s)	1031, 1468, 1569, 2047
BsiHKCI	CYCGRG	1 cut(s)	1692
BsiSI	CCGG	3 cut(s)	1241, 1390, 1777
BslFI	GGGAC	3 cut(s)	36, 1675, 1894
BslI	CCNNNNNNNGG	3 cut(s)	261, 1451, 1977
BsmAI	GTCTC	5 cut(s)	116, 378, 1321, 1701, 1707
BsmBI	CGTCTC	2 cut(s)	116, 378
BsmFI	GGGAC	3 cut(s)	36, 1675, 1894
BsmI	GAATGC	2 cut(s)	667, 1084
BsnI	GGCC	3 cut(s)	348, 614, 1596
BsoBI	CYCGRG	1 cut(s)	1692
Bsp1286I	GDGCHC	5 cut(s)	311, 1031, 1468, 1569, 2047
Bsp13I	TCCGGA	1 cut(s)	1240
Bsp1720I	GCTNAGC	2 cut(s)	823, 1500
BspACI	CCGC	8 cut(s)	35, 46, 222, 235, 437, 1135, 1597, 1971
BspANI	GGCC	3 cut(s)	348, 614, 1596
BspCNI	CTCAG	6 cut(s)	255, 538, 724, 836, 1011, 1492
BspDI	ATCGAT	2 cut(s)	486, 765
BspEI	TCCGGA	1 cut(s)	1240
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	5 cut(s)	475, 1443, 1629, 1882, 1969
BspMI	ACCTGC	1 cut(s)	982
BspOI	GCTAGC	2 cut(s)	32, 1955
BspPI	GGATC	3 cut(s)	722, 1200, 1788
BspT107I	GGYRCC	2 cut(s)	473, 1967
BspTI	CTTAAG	1 cut(s)	1622
BsrDI	GCAATG	2 cut(s)	1089, 1501
BsrFI	RCCGGY	1 cut(s)	1389
BsrI	ACTGG	2 cut(s)	175, 477
BssAI	RCCGGY	1 cut(s)	1389
BssECI	CCNNGG	3 cut(s)	1639, 1693, 1846
BssNI	GRCGYC	1 cut(s)	794
BssT1I	CCWWGG	1 cut(s)	1639
Bst2UI	CCWGG	2 cut(s)	1632, 1848
Bst4CI	ACNGT	6 cut(s)	269, 313, 1261, 1273, 1401, 1656
Bst6I	CTCTTC	3 cut(s)	329, 1116, 1214
BstACI	GRCGYC	1 cut(s)	794
BstAFI	CTTAAG	1 cut(s)	1622
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	6 cut(s)	30, 523, 989, 1453, 1601, 1953
BstF5I	GGATG	5 cut(s)	336, 466, 1249, 1263, 1705
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	1458
BstHHI	GCGC	2 cut(s)	521, 1457
BstMAI	GTCTC	5 cut(s)	116, 378, 1321, 1701, 1707
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 243, 848, 1441, 1463, 1472, 1641, 1644
BstNI	CCWGG	2 cut(s)	1632, 1848
BstNSI	RCATGY	1 cut(s)	1371
BstSCI	CCNGG	3 cut(s)	1630, 1776, 1846
BstSFI	CTRYAG	2 cut(s)	1652, 2036
BstSLI	GKGCMC	2 cut(s)	311, 1468
BstSNI	TACGTA	1 cut(s)	366
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	8 cut(s)	51, 80, 1073, 1421, 1487, 1598, 1622, 1631
BstV2I	GAAGAC	1 cut(s)	1373
BstX2I	RGATCY	1 cut(s)	714
BstXI	CCANNNNNNTGG	1 cut(s)	1553
BstYI	RGATCY	1 cut(s)	714
Bsu15I	ATCGAT	2 cut(s)	486, 765
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	348, 614, 1596
BsuTUI	ATCGAT	2 cut(s)	486, 765
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	5 cut(s)	336, 466, 1249, 1263, 1705
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	309, 657
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	6 cut(s)	30, 523, 989, 1453, 1601, 1953
CfoI	GCGC	2 cut(s)	521, 1457
Cfr10I	RCCGGY	1 cut(s)	1389
Cfr13I	GGNCC	2 cut(s)	346, 1881
ClaI	ATCGAT	2 cut(s)	486, 765
CseI	GACGC	3 cut(s)	226, 783, 1677
Csp6I	GTAC	6 cut(s)	227, 367, 493, 1163, 1336, 1657
CviAII	CATG	8 cut(s)	428, 843, 1052, 1075, 1368, 1436, 1448, 2000
CviQI	GTAC	6 cut(s)	227, 367, 493, 1163, 1336, 1657
DraI	TTTAAA	1 cut(s)	1344
Eam1104I	CTCTTC	3 cut(s)	329, 1116, 1214
EarI	CTCTTC	3 cut(s)	329, 1116, 1214
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	2 cut(s)	1029, 2045
Eco105I	TACGTA	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	1639
Eco24I	GRGCYC	2 cut(s)	1031, 2047
Eco32I	GATATC	2 cut(s)	858, 1579
Eco47I	GGWCC	1 cut(s)	1881
Eco53kI	GAGCTC	2 cut(s)	1029, 2045
Eco57I	CTGAAG	1 cut(s)	1824
Eco88I	CYCGRG	1 cut(s)	1692
EcoICRI	GAGCTC	2 cut(s)	1029, 2045
EcoO109I	RGGNCCY	2 cut(s)	346, 1881
EcoRII	CCWGG	2 cut(s)	1630, 1846
EcoRV	GATATC	2 cut(s)	858, 1579
EcoT14I	CCWWGG	1 cut(s)	1639
EcoT22I	ATGCAT	2 cut(s)	1369, 1437
EcoT38I	GRGCYC	2 cut(s)	1031, 2047
ErhI	CCWWGG	1 cut(s)	1639
Esp3I	CGTCTC	2 cut(s)	116, 378
FaeI	CATG	8 cut(s)	431, 846, 1055, 1078, 1371, 1439, 1451, 2003
FalI	AAGNNNNNCTT	4 cut(s)	1632, 1664, 1738, 1770
FaqI	GGGAC	3 cut(s)	36, 1675, 1894
FatI	CATG	8 cut(s)	427, 842, 1051, 1074, 1367, 1435, 1447, 1999
FauI	CCCGC	1 cut(s)	1128
FbaI	TGATCA	5 cut(s)	273, 628, 721, 814, 1357
FblI	GTMKAC	1 cut(s)	2035
FokI	GGATG	5 cut(s)	343, 473, 1250, 1256, 1712
FriOI	GRGCYC	2 cut(s)	1031, 2047
FspBI	CTAG	6 cut(s)	29, 393, 591, 1472, 1505, 1952
GlaI	GCGC	2 cut(s)	520, 1456
HaeII	RGCGCY	1 cut(s)	1458
HaeIII	GGCC	3 cut(s)	348, 614, 1596
HapII	CCGG	3 cut(s)	1241, 1390, 1777
HgaI	GACGC	3 cut(s)	226, 783, 1677
HhaI	GCGC	2 cut(s)	521, 1457
Hin1I	GRCGYC	1 cut(s)	794
Hin1II	CATG	8 cut(s)	431, 846, 1055, 1078, 1371, 1439, 1451, 2003
Hin6I	GCGC	2 cut(s)	519, 1455
HinP1I	GCGC	2 cut(s)	519, 1455
HincII	GTYRAC	2 cut(s)	454, 881
HindII	GTYRAC	2 cut(s)	454, 881
HindIII	AAGCTT	1 cut(s)	1806
HinfI	GANTC	4 cut(s)	1010, 1290, 1319, 2099
HpaII	CCGG	3 cut(s)	1241, 1390, 1777
HphI	GGTGA	2 cut(s)	451, 964
Hpy166II	GTNNAC	5 cut(s)	363, 454, 881, 1466, 2036
Hpy188I	TCNGA	6 cut(s)	273, 547, 633, 1068, 1576, 2049
Hpy8I	GTNNAC	5 cut(s)	363, 454, 881, 1466, 2036
HpyAV	CCTTC	8 cut(s)	78, 359, 407, 411, 705, 1223, 1658, 1983
HpyCH4III	ACNGT	6 cut(s)	269, 313, 1261, 1273, 1401, 1656
HpyCH4IV	ACGT	3 cut(s)	365, 1111, 1722
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 243, 848, 1441, 1463, 1472, 1641, 1644
HpySE526I	ACGT	3 cut(s)	365, 1111, 1722
Hsp92I	GRCGYC	1 cut(s)	794
Hsp92II	CATG	8 cut(s)	431, 846, 1055, 1078, 1371, 1439, 1451, 2003
HspAI	GCGC	2 cut(s)	519, 1455
Kpn2I	TCCGGA	1 cut(s)	1240
Ksp22I	TGATCA	5 cut(s)	273, 628, 721, 814, 1357
LmnI	GCTCC	5 cut(s)	37, 151, 1034, 1243, 1441
Lsp1109I	GCAGC	8 cut(s)	51, 80, 1073, 1421, 1487, 1598, 1622, 1631
LweI	GCATC	2 cut(s)	624, 1116
MaeI	CTAG	6 cut(s)	29, 393, 591, 1472, 1505, 1952
MaeII	ACGT	3 cut(s)	365, 1111, 1722
MaeIII	GTNAC	1 cut(s)	1853
MfeI	CAATTG	2 cut(s)	72, 1946
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	5 cut(s)	311, 1031, 1468, 1569, 2047
MluCI	AATT	7 cut(s)	72, 104, 1224, 1549, 1558, 1826, 1946
MlyI	GAGTC	1 cut(s)	1284
MmeI	TCCRAC	1 cut(s)	216
Mph1103I	ATGCAT	2 cut(s)	1369, 1437
MroI	TCCGGA	1 cut(s)	1240
MslI	CAYNNNNRTG	1 cut(s)	2004
MspA1I	CMGCKG	1 cut(s)	1599
MspCI	CTTAAG	1 cut(s)	1622
MspI	CCGG	3 cut(s)	1241, 1390, 1777
MspR9I	CCNGG	3 cut(s)	1632, 1778, 1848
MunI	CAATTG	2 cut(s)	72, 1946
Mva1269I	GAATGC	2 cut(s)	667, 1084
MvaI	CCWGG	2 cut(s)	1632, 1848
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	8 cut(s)	34, 243, 848, 1441, 1463, 1472, 1641, 1644
NciI	CCSGG	1 cut(s)	1778
NheI	GCTAGC	2 cut(s)	28, 1951
NlaIII	CATG	8 cut(s)	431, 846, 1055, 1078, 1371, 1439, 1451, 2003
NlaIV	GGNNCC	5 cut(s)	475, 1443, 1629, 1882, 1969
NsiI	ATGCAT	2 cut(s)	1369, 1437
NspI	RCATGY	1 cut(s)	1371
PaqCI	CACCTGC	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PctI	GAATGC	2 cut(s)	667, 1084
PfeI	GAWTC	3 cut(s)	1010, 1319, 2099
PflFI	GACNNNGTC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	1776
PleI	GAGTC	1 cut(s)	1284
PpsI	GAGTC	1 cut(s)	1284
Ppu21I	YACGTR	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	1881
PshBI	ATTAAT	1 cut(s)	1179
PsiI	TTATAA	1 cut(s)	947
Psp124BI	GAGCTC	2 cut(s)	1031, 2047
Psp1406I	AACGTT	1 cut(s)	1722
Psp5II	RGGWCCY	1 cut(s)	1881
Psp6I	CCWGG	2 cut(s)	1630, 1846
PspGI	CCWGG	2 cut(s)	1630, 1846
PspN4I	GGNNCC	5 cut(s)	475, 1443, 1629, 1882, 1969
PspPI	GGNCC	2 cut(s)	346, 1881
PspPPI	RGGWCCY	1 cut(s)	1881
PsrI	GAACNNNNNNTAC	2 cut(s)	2052, 2084
PsuI	RGATCY	1 cut(s)	714
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	6 cut(s)	228, 368, 494, 1164, 1337, 1658
RsaNI	GTAC	6 cut(s)	227, 367, 493, 1163, 1336, 1657
RseI	CAYNNNNRTG	1 cut(s)	2004
SacI	GAGCTC	2 cut(s)	1031, 2047
Sau96I	GGNCC	2 cut(s)	346, 1881
ScaI	AGTACT	1 cut(s)	1658
SchI	GAGTC	1 cut(s)	1284
ScrFI	CCNGG	3 cut(s)	1632, 1778, 1848
SduI	GDGCHC	5 cut(s)	311, 1031, 1468, 1569, 2047
SfaNI	GCATC	2 cut(s)	624, 1116
SfcI	CTRYAG	2 cut(s)	1652, 2036
SinI	GGWCC	1 cut(s)	1881
SmiI	ATTTAAAT	1 cut(s)	1344
SmiMI	CAYNNNNRTG	1 cut(s)	2004
SmlI	CTYRAG	2 cut(s)	1622, 1763
SmoI	CTYRAG	2 cut(s)	1622, 1763
SnaBI	TACGTA	1 cut(s)	366
Sse9I	AATT	7 cut(s)	72, 104, 1224, 1549, 1558, 1826, 1946
SsiI	CCGC	8 cut(s)	35, 46, 222, 235, 437, 1135, 1597, 1971
SspMI	CTAG	6 cut(s)	29, 393, 591, 1472, 1505, 1952
SstI	GAGCTC	2 cut(s)	1031, 2047
StyD4I	CCNGG	3 cut(s)	1630, 1776, 1846
StyI	CCWWGG	1 cut(s)	1639
SwaI	ATTTAAAT	1 cut(s)	1344
TaaI	ACNGT	6 cut(s)	269, 313, 1261, 1273, 1401, 1656
TaiI	ACGT	3 cut(s)	368, 1114, 1725
TaqI	TCGA	6 cut(s)	114, 231, 486, 765, 1175, 1525
TasI	AATT	7 cut(s)	72, 104, 1224, 1549, 1558, 1826, 1946
TatI	WGTACW	1 cut(s)	1656
TauI	GCSGC	3 cut(s)	48, 1599, 1973
TfiI	GAWTC	3 cut(s)	1010, 1319, 2099
TscAI	CASTG	2 cut(s)	316, 657
TseI	GCWGC	8 cut(s)	64, 93, 1061, 1409, 1475, 1586, 1635, 1644
TspDTI	ATGAA	6 cut(s)	169, 347, 1091, 1988, 2022, 2106
TspGWI	ACGGA	2 cut(s)	98, 128
TspRI	CASTG	2 cut(s)	316, 657
Tth111I	GACNNNGTC	1 cut(s)	236
Vha464I	CTTAAG	1 cut(s)	1622
VneI	GTGCAC	1 cut(s)	1464
VpaK11BI	GGWCC	1 cut(s)	1881
VspI	ATTAAT	1 cut(s)	1179
XapI	RAATTY	1 cut(s)	1549
XceI	RCATGY	1 cut(s)	1371
XmiI	GTMKAC	1 cut(s)	2035
XspI	CTAG	6 cut(s)	29, 393, 591, 1472, 1505, 1952
ZrmI	AGTACT	1 cut(s)	1658
Zsp2I	ATGCAT	2 cut(s)	1369, 1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.